View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0612_low_9 (Length: 333)

Name: NF0612_low_9
Description: NF0612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0612_low_9
NF0612_low_9
[»] chr5 (6 HSPs)
chr5 (65-252)||(22198872-22199059)
chr5 (95-139)||(31973134-31973178)
chr5 (99-138)||(15844510-15844549)
chr5 (95-138)||(30366688-30366731)
chr5 (100-138)||(32661593-32661631)
chr5 (99-132)||(38069577-38069610)
[»] chr1 (14 HSPs)
chr1 (65-252)||(21641291-21641477)
chr1 (100-144)||(17557702-17557746)
chr1 (95-138)||(19809943-19809986)
chr1 (95-138)||(19810683-19810726)
chr1 (95-138)||(19810996-19811039)
chr1 (99-137)||(10239511-10239549)
chr1 (98-141)||(13031123-13031166)
chr1 (95-130)||(19609178-19609213)
chr1 (98-133)||(40571606-40571641)
chr1 (98-132)||(347122-347156)
chr1 (99-139)||(347351-347391)
chr1 (98-138)||(7525066-7525106)
chr1 (95-142)||(29409945-29409993)
chr1 (98-138)||(41590214-41590254)
[»] chr7 (12 HSPs)
chr7 (95-138)||(39079926-39079969)
chr7 (95-138)||(14595866-14595909)
chr7 (98-138)||(16015394-16015434)
chr7 (95-138)||(38963368-38963411)
chr7 (95-141)||(1404836-1404882)
chr7 (98-132)||(21033611-21033645)
chr7 (99-141)||(39164707-39164749)
chr7 (101-138)||(14596178-14596215)
chr7 (101-138)||(16015706-16015743)
chr7 (96-133)||(27821113-27821150)
chr7 (105-141)||(1920245-1920281)
chr7 (97-129)||(36541840-36541872)
[»] chr4 (9 HSPs)
chr4 (95-138)||(17912817-17912860)
chr4 (97-132)||(50830708-50830743)
chr4 (98-138)||(46676697-46676737)
chr4 (99-138)||(24001542-24001581)
chr4 (95-138)||(30490939-30490982)
chr4 (93-138)||(22572429-22572475)
chr4 (95-132)||(3137471-3137508)
chr4 (98-134)||(50816715-50816752)
chr4 (96-132)||(49824632-49824668)
[»] chr2 (10 HSPs)
chr2 (96-142)||(33456038-33456084)
chr2 (99-132)||(3008439-3008472)
chr2 (95-138)||(5511787-5511830)
chr2 (108-139)||(13982118-13982149)
chr2 (98-139)||(11064261-11064303)
chr2 (95-140)||(22975518-22975563)
chr2 (102-139)||(26580055-26580092)
chr2 (98-142)||(5137484-5137528)
chr2 (98-138)||(7252250-7252290)
chr2 (97-141)||(11339672-11339715)
[»] chr8 (10 HSPs)
chr8 (95-138)||(45031151-45031195)
chr8 (97-138)||(10368683-10368724)
chr8 (95-138)||(6865201-6865245)
chr8 (95-139)||(26642663-26642707)
chr8 (99-138)||(14250623-14250662)
chr8 (95-130)||(45031369-45031404)
chr8 (93-139)||(294449-294495)
chr8 (97-138)||(30014156-30014197)
chr8 (95-132)||(30966073-30966110)
chr8 (95-132)||(34621963-34622000)
[»] chr3 (6 HSPs)
chr3 (96-139)||(39225009-39225052)
chr3 (99-138)||(31151832-31151871)
chr3 (99-138)||(54861605-54861644)
chr3 (96-138)||(43955324-43955366)
chr3 (97-138)||(1348875-1348916)
chr3 (96-136)||(45411897-45411937)
[»] chr6 (1 HSPs)
chr6 (100-138)||(7938938-7938976)


Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 65 - 252
Target Start/End: Complemental strand, 22199059 - 22198872
Alignment:
Q  65 agctgttgccaacaaaaaagcccttaagaggccggttttgtaaggttgagttaggcccaacccaaattttaagagttagtcacagttcagggacactggt 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22199059 agctgttgccaacaaaaaagcccttaagaggccggttttgtaaggttgagttaggcccaacccaaattttaagagttagtcacagttcagggacactggt 22198960  T
Q  165 cacacaatcgctacacaccaaatcattctatcaaatccttactgaaaccagataactgaccaagcctgaacccattcaccacaggttc 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22198959 cacacaatcgctacacaccaaatcattctatcaaatccttactgaaaccagataactgaccaagcctgaacccattcaccacaggttc 22198872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 31973178 - 31973134
Alignment:
Q  95 gccggttttgtaaggttgagttaggcccaacccaaattttaagag 139  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||    
T  31973178 gccggttttgtaaggttcagttaggcccaacccaaattctaagag 31973134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 138
Target Start/End: Complemental strand, 15844549 - 15844510
Alignment:
Q  99 gttttgtaaggttgagttaggcccaacccaaattttaaga 138  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  15844549 gttttgtaagattgagttaggcccaacccaaattttaaga 15844510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 138
Target Start/End: Original strand, 30366688 - 30366731
Alignment:
Q  95 gccggttttgtaaggttgagttaggcccaacccaaattttaaga 138  Q
    ||||| |||||||||||||||||||||||| ||||||| |||||    
T  30366688 gccggctttgtaaggttgagttaggcccaaaccaaattctaaga 30366731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 138
Target Start/End: Original strand, 32661593 - 32661631
Alignment:
Q  100 ttttgtaaggttgagttaggcccaacccaaattttaaga 138  Q
    ||||||||| ||||||||||||||||||||||| |||||    
T  32661593 ttttgtaagattgagttaggcccaacccaaattctaaga 32661631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 132
Target Start/End: Complemental strand, 38069610 - 38069577
Alignment:
Q  99 gttttgtaaggttgagttaggcccaacccaaatt 132  Q
    ||||| ||||||||||||||||||||||||||||    
T  38069610 gttttataaggttgagttaggcccaacccaaatt 38069577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 65 - 252
Target Start/End: Complemental strand, 21641477 - 21641291
Alignment:
Q  65 agctgttgccaacaaaaaagcccttaagaggccggttttgtaaggttgagttaggcccaacccaaattttaagagttagtcacagttcagggacactggt 164  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  21641477 agctgttgccaacaaaaaagccctta-gaggccggttttgtaaggttgagttaggcccaacccaaattttaagagttagtcacagatcagggacactggt 21641379  T
Q  165 cacacaatcgctacacaccaaatcattctatcaaatccttactgaaaccagataactgaccaagcctgaacccattcaccacaggttc 252  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  21641378 cacacaatcgctacacactaaatcattctatcaaatccttactcaaatcagataactgaccaagcctgaacccattcaccacaggttc 21641291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 17557746 - 17557702
Alignment:
Q  100 ttttgtaaggttgagttaggcccaacccaaattttaagagttagt 144  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||    
T  17557746 ttttgtaaggttgagttaggcccaacccaaattctaagaattagt 17557702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 138
Target Start/End: Complemental strand, 19809986 - 19809943
Alignment:
Q  95 gccggttttgtaaggttgagttaggcccaacccaaattttaaga 138  Q
    |||| ||||||||||||||||||||||||||||||| |||||||    
T  19809986 gccgattttgtaaggttgagttaggcccaacccaaaatttaaga 19809943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 138
Target Start/End: Complemental strand, 19810726 - 19810683
Alignment:
Q  95 gccggttttgtaaggttgagttaggcccaacccaaattttaaga 138  Q
    |||| ||||||||||||||| |||||||||||||||||||||||    
T  19810726 gccgattttgtaaggttgagctaggcccaacccaaattttaaga 19810683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 138
Target Start/End: Complemental strand, 19811039 - 19810996
Alignment:
Q  95 gccggttttgtaaggttgagttaggcccaacccaaattttaaga 138  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||    
T  19811039 gccggttttgtaaggttgacttaggccgaacccaaattttaaga 19810996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 137
Target Start/End: Original strand, 10239511 - 10239549
Alignment:
Q  99 gttttgtaaggttgagttaggcccaacccaaattttaag 137  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  10239511 gttttgtaaggttgagttaggcccaacccaagttttaag 10239549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 141
Target Start/End: Complemental strand, 13031166 - 13031123
Alignment:
Q  98 ggttttgtaaggttgagttaggcccaacccaaattttaagagtt 141  Q
    ||||||||| |||||||||||| |||||||||||| ||||||||    
T  13031166 ggttttgtagggttgagttaggtccaacccaaattctaagagtt 13031123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 130
Target Start/End: Complemental strand, 19609213 - 19609178
Alignment:
Q  95 gccggttttgtaaggttgagttaggcccaacccaaa 130  Q
    |||||||||||||||||||||||||| |||||||||    
T  19609213 gccggttttgtaaggttgagttaggctcaacccaaa 19609178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 133
Target Start/End: Original strand, 40571606 - 40571641
Alignment:
Q  98 ggttttgtaaggttgagttaggcccaacccaaattt 133  Q
    ||||||||||||||||||||||||||| ||||||||    
T  40571606 ggttttgtaaggttgagttaggcccaatccaaattt 40571641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 347122 - 347156
Alignment:
Q  98 ggttttgtaaggttgagttaggcccaacccaaatt 132  Q
    |||||||||||||||||||||| ||||||||||||    
T  347122 ggttttgtaaggttgagttagggccaacccaaatt 347156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 347351 - 347391
Alignment:
Q  99 gttttgtaaggttgagttaggcccaacccaaattttaagag 139  Q
    |||||||||||||||||||||  ||||||||||| ||||||    
T  347351 gttttgtaaggttgagttaggttcaacccaaattctaagag 347391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 7525066 - 7525106
Alignment:
Q  98 ggttttgtaaggttgagttaggcccaacccaaattttaaga 138  Q
    ||||||||||||||||||||||| ||| ||||||| |||||    
T  7525066 ggttttgtaaggttgagttaggctcaatccaaattctaaga 7525106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 142
Target Start/End: Complemental strand, 29409993 - 29409945
Alignment:
Q  95 gccggttttgtaagg-ttgagttaggcccaacccaaattttaagagtta 142  Q
    ||||||||||||||| |||||||||||||| || ||||| |||||||||    
T  29409993 gccggttttgtaagggttgagttaggcccaccctaaattctaagagtta 29409945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 41590254 - 41590214
Alignment:
Q  98 ggttttgtaaggttgagttaggcccaacccaaattttaaga 138  Q
    ||||||||||||||||||| ||||||||| ||||| |||||    
T  41590254 ggttttgtaaggttgagtttggcccaacctaaattctaaga 41590214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 138
Target Start/End: Complemental strand, 39079969 - 39079926
Alignment:
Q  95 gccggttttgtaaggttgagttaggcccaacccaaattttaaga 138  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  39079969 gccggttttgtaaggtttagttaggcccaacccaaattttaaga 39079926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 138
Target Start/End: Complemental strand, 14595909 - 14595866
Alignment:
Q  95 gccggttttgtaaggttgagttaggcccaacccaaattttaaga 138  Q
    ||||||||||||||||||||||||| |||| |||||||||||||    
T  14595909 gccggttttgtaaggttgagttaggtccaatccaaattttaaga 14595866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 16015434 - 16015394
Alignment:
Q  98 ggttttgtaaggttgagttaggcccaacccaaattttaaga 138  Q
    |||||||||||||||||||||| |||| |||||||||||||    
T  16015434 ggttttgtaaggttgagttaggtccaatccaaattttaaga 16015394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 138
Target Start/End: Complemental strand, 38963411 - 38963368
Alignment:
Q  95 gccggttttgtaaggttgagttaggcccaacccaaattttaaga 138  Q
    |||||||| ||||||||||||||||| ||||||||||| |||||    
T  38963411 gccggtttggtaaggttgagttaggctcaacccaaattctaaga 38963368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 141
Target Start/End: Original strand, 1404836 - 1404882
Alignment:
Q  95 gccggttttgtaaggttgagttaggcccaacccaaattttaagagtt 141  Q
    |||| ||||||| |||| |||||||| ||||||||||||||||||||    
T  1404836 gccgattttgtatggttaagttaggctcaacccaaattttaagagtt 1404882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 132
Target Start/End: Complemental strand, 21033645 - 21033611
Alignment:
Q  98 ggttttgtaaggttgagttaggcccaacccaaatt 132  Q
    ||||||||||||||||||||||||||| |||||||    
T  21033645 ggttttgtaaggttgagttaggcccaatccaaatt 21033611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 141
Target Start/End: Original strand, 39164707 - 39164749
Alignment:
Q  99 gttttgtaaggttgagttaggcccaacccaaattttaagagtt 141  Q
    ||||| |||||||||||||||||||||||||||| || |||||    
T  39164707 gttttataaggttgagttaggcccaacccaaattctaggagtt 39164749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 138
Target Start/End: Complemental strand, 14596215 - 14596178
Alignment:
Q  101 tttgtaaggttgagttaggcccaacccaaattttaaga 138  Q
    |||||||||||||||||||||||| | |||||||||||    
T  14596215 tttgtaaggttgagttaggcccaatcaaaattttaaga 14596178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 138
Target Start/End: Complemental strand, 16015743 - 16015706
Alignment:
Q  101 tttgtaaggttgagttaggcccaacccaaattttaaga 138  Q
    |||||||||||||||||||||||| | |||||||||||    
T  16015743 tttgtaaggttgagttaggcccaatcaaaattttaaga 16015706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 133
Target Start/End: Original strand, 27821113 - 27821150
Alignment:
Q  96 ccggttttgtaaggttgagttaggcccaacccaaattt 133  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  27821113 ccggttttttaaggttgagttaggtccaacccaaattt 27821150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 141
Target Start/End: Original strand, 1920245 - 1920281
Alignment:
Q  105 taaggttgagttaggcccaacccaaattttaagagtt 141  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  1920245 taaggttgagttaggcccaaccaaaattctaagagtt 1920281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 129
Target Start/End: Complemental strand, 36541872 - 36541840
Alignment:
Q  97 cggttttgtaaggttgagttaggcccaacccaa 129  Q
    ||||||||||||||| |||||||||||||||||    
T  36541872 cggttttgtaaggtttagttaggcccaacccaa 36541840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 138
Target Start/End: Original strand, 17912817 - 17912860
Alignment:
Q  95 gccggttttgtaaggttgagttaggcccaacccaaattttaaga 138  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  17912817 gccggttttgtagggttgagttaggcccaacccaaattttaaga 17912860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 132
Target Start/End: Complemental strand, 50830743 - 50830708
Alignment:
Q  97 cggttttgtaaggttgagttaggcccaacccaaatt 132  Q
    ||||||||||||||||||||||||||||||||||||    
T  50830743 cggttttgtaaggttgagttaggcccaacccaaatt 50830708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 46676697 - 46676737
Alignment:
Q  98 ggttttgtaaggttgagttaggcccaacccaaattttaaga 138  Q
    ||||||||| |||||||||||| ||||||||||||||||||    
T  46676697 ggttttgtagggttgagttaggtccaacccaaattttaaga 46676737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 99 - 138
Target Start/End: Original strand, 24001542 - 24001581
Alignment:
Q  99 gttttgtaaggttgagttaggcccaacccaaattttaaga 138  Q
    ||||||||||||||||||| |||||||||||||| |||||    
T  24001542 gttttgtaaggttgagttaagcccaacccaaattctaaga 24001581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 138
Target Start/End: Complemental strand, 30490982 - 30490939
Alignment:
Q  95 gccggttttgtaaggttgagttaggcccaacccaaattttaaga 138  Q
    |||| ||| ||||||||||||||||||||||||||||| |||||    
T  30490982 gccgttttcgtaaggttgagttaggcccaacccaaattctaaga 30490939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 22572429 - 22572475
Alignment:
Q  93 aggccggttttgtaag-gttgagttaggcccaacccaaattttaaga 138  Q
    |||||||||||||||| ||||||||||| |||||||||| |||||||    
T  22572429 aggccggttttgtaagagttgagttaggaccaacccaaaatttaaga 22572475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 3137508 - 3137471
Alignment:
Q  95 gccggttttgtaaggttgagttaggcccaacccaaatt 132  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  3137508 gccggttttttaaggttgatttaggcccaacccaaatt 3137471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 50816752 - 50816715
Alignment:
Q  98 ggttttgtaa-ggttgagttaggcccaacccaaatttt 134  Q
    |||||||||| |||||||||||||||||||||||||||    
T  50816752 ggttttgtaatggttgagttaggcccaacccaaatttt 50816715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 49824632 - 49824668
Alignment:
Q  96 ccggttttgtaaggttgagttaggcccaacccaaatt 132  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  49824632 ccggttttgtagggttgagttaggccaaacccaaatt 49824668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 96 - 142
Target Start/End: Original strand, 33456038 - 33456084
Alignment:
Q  96 ccggttttgtaaggttgagttaggcccaacccaaattttaagagtta 142  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||    
T  33456038 ccggttttgtaaggttgagttaggcccaacccaaattctaatagtta 33456084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 99 - 132
Target Start/End: Original strand, 3008439 - 3008472
Alignment:
Q  99 gttttgtaaggttgagttaggcccaacccaaatt 132  Q
    ||||||||||||||||||||||||||||||||||    
T  3008439 gttttgtaaggttgagttaggcccaacccaaatt 3008472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 138
Target Start/End: Complemental strand, 5511830 - 5511787
Alignment:
Q  95 gccggttttgtaaggttgagttaggcccaacccaaattttaaga 138  Q
    |||||||||  ||||||||||||||||||||||||||| |||||    
T  5511830 gccggttttagaaggttgagttaggcccaacccaaattctaaga 5511787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 139
Target Start/End: Complemental strand, 13982149 - 13982118
Alignment:
Q  108 ggttgagttaggcccaacccaaattttaagag 139  Q
    ||||||||||||||||||||||||||||||||    
T  13982149 ggttgagttaggcccaacccaaattttaagag 13982118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 139
Target Start/End: Complemental strand, 11064303 - 11064261
Alignment:
Q  98 ggttttgtaag-gttgagttaggcccaacccaaattttaagag 139  Q
    ||||||||||| |||||||||||||||||||||||| ||||||    
T  11064303 ggttttgtaagagttgagttaggcccaacccaaattctaagag 11064261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 22975563 - 22975518
Alignment:
Q  95 gccggttttgtaaggttgagttaggcccaacccaaattttaagagt 140  Q
    |||||||||||| || ||||||| |||||||||||| |||||||||    
T  22975563 gccggttttgtagggctgagttaagcccaacccaaaatttaagagt 22975518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 26580092 - 26580055
Alignment:
Q  102 ttgtaaggttgagttaggcccaacccaaattttaagag 139  Q
    |||||||||||| |||||||||||||||||| ||||||    
T  26580092 ttgtaaggttgaattaggcccaacccaaattctaagag 26580055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 5137484 - 5137528
Alignment:
Q  98 ggttttgtaaggttgagttaggcccaacccaaattttaagagtta 142  Q
    ||||||||| ||||||||| || |||||||||||| |||||||||    
T  5137484 ggttttgtacggttgagtttggtccaacccaaattctaagagtta 5137528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 7252250 - 7252290
Alignment:
Q  98 ggttttgtaaggttgagttaggcccaacccaaattttaaga 138  Q
    ||||||||| ||||||||||||| ||||||||||| |||||    
T  7252250 ggttttgtagggttgagttaggctcaacccaaattctaaga 7252290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 11339715 - 11339672
Alignment:
Q  97 cggttttgtaaggttgagttaggcccaacccaaattttaagagtt 141  Q
    |||||||||||| || |||||||||||||||||||| ||||||||    
T  11339715 cggttttgtaagttt-agttaggcccaacccaaattctaagagtt 11339672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 95 - 138
Target Start/End: Complemental strand, 45031195 - 45031151
Alignment:
Q  95 gccggttttgtaaggttgagttaggcccaaccc-aaattttaaga 138  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  45031195 gccggttttgtaaggttgagttaggcccaacccaaaattttaaga 45031151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 97 - 138
Target Start/End: Original strand, 10368683 - 10368724
Alignment:
Q  97 cggttttgtaaggttgagttaggcccaacccaaattttaaga 138  Q
    |||||||||| ||||||||||| |||||||||||||||||||    
T  10368683 cggttttgtagggttgagttagtcccaacccaaattttaaga 10368724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 138
Target Start/End: Complemental strand, 6865245 - 6865201
Alignment:
Q  95 gccggttttgtaagg-ttgagttaggcccaacccaaattttaaga 138  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||    
T  6865245 gccggttttgtaagggttgagttaagcccaacccaaattttaaga 6865201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 139
Target Start/End: Original strand, 26642663 - 26642707
Alignment:
Q  95 gccggttttgtaaggttgagttaggcccaacccaaattttaagag 139  Q
    |||||||| |||||||||| |||||||||||||||||| ||||||    
T  26642663 gccggtttggtaaggttgatttaggcccaacccaaattctaagag 26642707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 99 - 138
Target Start/End: Complemental strand, 14250662 - 14250623
Alignment:
Q  99 gttttgtaaggttgagttaggcccaacccaaattttaaga 138  Q
    |||||||||||||||||||| |||||||||| ||||||||    
T  14250662 gttttgtaaggttgagttagacccaacccaatttttaaga 14250623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 130
Target Start/End: Complemental strand, 45031404 - 45031369
Alignment:
Q  95 gccggttttgtaaggttgagttaggcccaacccaaa 130  Q
    |||||||||||||||||| |||||||||||||||||    
T  45031404 gccggttttgtaaggttgtgttaggcccaacccaaa 45031369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 139
Target Start/End: Original strand, 294449 - 294495
Alignment:
Q  93 aggccggttttgtaaggttgagttaggcccaacccaaattttaagag 139  Q
    |||||| ||||||| | |||||||||| |||||||||||||||||||    
T  294449 aggccgattttgtaggattgagttaggtccaacccaaattttaagag 294495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 138
Target Start/End: Complemental strand, 30014197 - 30014156
Alignment:
Q  97 cggttttgtaaggttgagttaggcccaacccaaattttaaga 138  Q
    |||||||||| ||||||||||| ||||||| |||||||||||    
T  30014197 cggttttgtagggttgagttagacccaacctaaattttaaga 30014156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 30966110 - 30966073
Alignment:
Q  95 gccggttttgtaaggttgagttaggcccaacccaaatt 132  Q
    |||||||||||||  |||||||||||||||||||||||    
T  30966110 gccggttttgtaaatttgagttaggcccaacccaaatt 30966073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 132
Target Start/End: Original strand, 34621963 - 34622000
Alignment:
Q  95 gccggttttgtaaggttgagttaggcccaacccaaatt 132  Q
    |||||| |||||||| ||||||||||||||||||||||    
T  34621963 gccggtgttgtaaggctgagttaggcccaacccaaatt 34622000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 139
Target Start/End: Complemental strand, 39225052 - 39225009
Alignment:
Q  96 ccggttttgtaaggttgagttaggcccaacccaaattttaagag 139  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||    
T  39225052 ccggtcttgtaaggttgagttaggcccaacccaaattctaagag 39225009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 99 - 138
Target Start/End: Original strand, 31151832 - 31151871
Alignment:
Q  99 gttttgtaaggttgagttaggcccaacccaaattttaaga 138  Q
    |||||||||||||||||||||||||||||| ||| |||||    
T  31151832 gttttgtaaggttgagttaggcccaacccatattctaaga 31151871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 99 - 138
Target Start/End: Original strand, 54861605 - 54861644
Alignment:
Q  99 gttttgtaaggttgagttaggcccaacccaaattttaaga 138  Q
    ||||||| ||||||||||| ||||||||||||||||||||    
T  54861605 gttttgttaggttgagttacgcccaacccaaattttaaga 54861644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 138
Target Start/End: Complemental strand, 43955366 - 43955324
Alignment:
Q  96 ccggttttgtaaggttgagttaggcccaacccaaattttaaga 138  Q
    |||||||| |||||||||||||||| ||||||||||| |||||    
T  43955366 ccggttttataaggttgagttaggctcaacccaaattctaaga 43955324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 138
Target Start/End: Complemental strand, 1348916 - 1348875
Alignment:
Q  97 cggttttgtaaggttgagttaggcccaacccaaattttaaga 138  Q
    |||||||||| ||||||||||| | |||||||||||||||||    
T  1348916 cggttttgtatggttgagttagactcaacccaaattttaaga 1348875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 45411937 - 45411897
Alignment:
Q  96 ccggttttgtaaggttgagttaggcccaacccaaattttaa 136  Q
    |||||| ||||| ||||||||||| ||||||||||||||||    
T  45411937 ccggttgtgtaaagttgagttaggtccaacccaaattttaa 45411897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 138
Target Start/End: Complemental strand, 7938976 - 7938938
Alignment:
Q  100 ttttgtaaggttgagttaggcccaacccaaattttaaga 138  Q
    ||||||| |||||||||||||| ||||||||||||||||    
T  7938976 ttttgtagggttgagttaggccaaacccaaattttaaga 7938938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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