View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0613_high_1 (Length: 420)
Name: NF0613_high_1
Description: NF0613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0613_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 99 - 405
Target Start/End: Original strand, 42837060 - 42837359
Alignment:
| Q |
99 |
atagtgtattagaaactaccaactcaccggaaaacccaagagaagttgctcgtggtagccgcgccgcttccataccagtaacctgaagatcgctgcactg |
198 |
Q |
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| T |
42837060 |
atagtgtattagaaactaccaactcaccggaaaacccaagaggagttgctcgtggtagccg-----cttccataccagtaacctgaagatcgctgcactg |
42837154 |
T |
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| Q |
199 |
cttggagaattgatctgatcggaatcaatcattcatcatcaatggagatggagacagatgaaggtataaacagtcttaaagctcgcatagaaactcaaca |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42837155 |
cttggagaattgatctgatcggaatcaatcattcatcatcaatggagatggagacagatgaaggtataaacagtcttaaagctcgcatagaaactcaaca |
42837254 |
T |
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| Q |
299 |
caagtcgcacatggacatgctttcttctgtacaatctgttatacctaattttgtttcatctcactcgacctttctctcaaagttctctcttctttcaacc |
398 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42837255 |
caagtcgcacatgtacatgctttcttctgtacaatctgttatacctaattttgtttcttct--ctcgacctttctctcaaagttctctcttctttcaacc |
42837352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 277 - 405
Target Start/End: Complemental strand, 43915079 - 43914953
Alignment:
| Q |
277 |
aagctcgcatagaaactcaacacaagtcgcacatggacatgctttcttctgtacaatctgttatacctaattttgtttcatctcactcgacctttctctc |
376 |
Q |
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|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||| ||| || ||||||||||| |
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| T |
43915079 |
aagctcgcatagaaacccaacacaagtcacacatggacatgctttcttctgtacaatccgttatacctaatcttgtttcttct--cttgacctttctctg |
43914982 |
T |
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| Q |
377 |
aaagttctctcttctttcaaccaccgtcc |
405 |
Q |
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| T |
43914981 |
aaagttctctcttctttcaaccaccgtcc |
43914953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 221 - 272
Target Start/End: Complemental strand, 43915156 - 43915105
Alignment:
| Q |
221 |
aatcaatcattcatcatcaatggagatggagacagatgaaggtataaacagt |
272 |
Q |
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|||| ||||||||||||| ||| | |||||||||||||||||| |||||||| |
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| T |
43915156 |
aatccatcattcatcatccatgaacatggagacagatgaaggtttaaacagt |
43915105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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