View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0613_high_2 (Length: 408)

Name: NF0613_high_2
Description: NF0613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0613_high_2
NF0613_high_2
[»] chr8 (4 HSPs)
chr8 (94-296)||(38007566-38007768)
chr8 (344-408)||(38007510-38007575)
chr8 (331-369)||(11540024-11540062)
chr8 (329-369)||(24810541-24810581)
[»] chr1 (4 HSPs)
chr1 (127-229)||(17458919-17459020)
chr1 (329-372)||(9623570-9623613)
chr1 (312-362)||(39489668-39489718)
chr1 (316-369)||(15226366-15226419)
[»] chr2 (2 HSPs)
chr2 (326-366)||(5878107-5878147)
chr2 (102-203)||(34590375-34590477)
[»] chr4 (7 HSPs)
chr4 (313-367)||(195475-195529)
chr4 (329-366)||(11697392-11697429)
chr4 (322-355)||(20167353-20167386)
chr4 (329-366)||(51205667-51205704)
chr4 (332-369)||(53741230-53741267)
chr4 (102-182)||(53786008-53786089)
chr4 (326-366)||(38293769-38293809)
[»] scaffold0041 (1 HSPs)
scaffold0041 (322-369)||(57802-57849)
[»] chr7 (2 HSPs)
chr7 (322-369)||(40915246-40915293)
chr7 (315-368)||(35120156-35120209)
[»] chr5 (2 HSPs)
chr5 (137-227)||(34224256-34224345)
chr5 (329-369)||(513926-513966)
[»] chr6 (1 HSPs)
chr6 (312-369)||(8416290-8416347)
[»] chr3 (1 HSPs)
chr3 (329-369)||(34430459-34430499)


Alignment Details
Target: chr8 (Bit Score: 179; Significance: 2e-96; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 94 - 296
Target Start/End: Complemental strand, 38007768 - 38007566
Alignment:
Q  94 ctaacttcttctagtatataaactacttctttgtacatttgttcatatctcaataataaaaattcattacttcattctcatcatctattatttcttctaa 193  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  38007768 ctaacttgttctagtatataaactacctctttgtacatttgttcatatctcaataataaaaattcattatttcattctcatcatctattatttcttctaa 38007669  T
Q  194 ttctctctaaatcaacaaaatcacaaaaaccctaaagaaccattgcttgagattcaagcttctaagttgggctaacagttatttcttttgctaaagataa 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||    
T  38007668 ttctctctaaatcaacaaaatcacaaaaaccctaaagaaccattgcttgagattcaagcttctaagttgggccaacaattatttgttttgctaaagataa 38007569  T
Q  294 gtt 296  Q
    |||    
T  38007568 gtt 38007566  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 344 - 408
Target Start/End: Complemental strand, 38007575 - 38007510
Alignment:
Q  344 aagataagttaatataaaaatatgacgtg-ccatgtgagcttaactcatttgataggaacattata 408  Q
    |||||||||||||||||||||||||||||  | ||||| |||| ||||||||||||||||||||||    
T  38007575 aagataagttaatataaaaatatgacgtgttcctgtgaccttagctcatttgataggaacattata 38007510  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 369
Target Start/End: Complemental strand, 11540062 - 11540024
Alignment:
Q  331 ttgaatttattttaagataagttaatataaaaatatgac 369  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  11540062 ttgaatttattttaatataaattaatataaaaatatgac 11540024  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 369
Target Start/End: Complemental strand, 24810581 - 24810541
Alignment:
Q  329 atttgaatttattttaagataagttaatataaaaatatgac 369  Q
    |||||| |||||||||| ||||||||| |||||||||||||    
T  24810581 atttgactttattttaaaataagttaaaataaaaatatgac 24810541  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 127 - 229
Target Start/End: Complemental strand, 17459020 - 17458919
Alignment:
Q  127 tacatttgttcatatctcaataataaaaattcattacttcattctcatcatctattatttcttctaattctctctaaatcaacaaaatcacaaaaaccct 226  Q
    ||||||||||||||| ||||||||| || |||| | ||  ||||  |||||||||| |||||||| |||||||| ||||| |||||| || |||||||||    
T  17459020 tacatttgttcatatatcaataatacaatttcacttctcaattcctatcatctattctttcttctcattctctcaaaatccacaaaacca-aaaaaccct 17458922  T
Q  227 aaa 229  Q
    |||    
T  17458921 aaa 17458919  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 329 - 372
Target Start/End: Complemental strand, 9623613 - 9623570
Alignment:
Q  329 atttgaatttattttaagataagttaatataaaaatatgacgtg 372  Q
    ||||||||||||||||| |||| ||||||| |||||||||||||    
T  9623613 atttgaatttattttaatataaattaatatcaaaatatgacgtg 9623570  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 362
Target Start/End: Original strand, 39489668 - 39489718
Alignment:
Q  312 agcaaaatatattcaaaatttgaatttattttaagataagttaatataaaa 362  Q
    |||||||| |||| || ||||||||||||||||| |||| |||||||||||    
T  39489668 agcaaaatttatttaatatttgaatttattttaaaataaattaatataaaa 39489718  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 369
Target Start/End: Original strand, 15226366 - 15226419
Alignment:
Q  316 aaatatattcaaaatttgaatttattttaagataagttaatataaaaatatgac 369  Q
    |||| ||||||||||||||||| |||| || |||| || |||||||||||||||    
T  15226366 aaatttattcaaaatttgaattaatttaaaaataaattcatataaaaatatgac 15226419  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 326 - 366
Target Start/End: Original strand, 5878107 - 5878147
Alignment:
Q  326 aaaatttgaatttattttaagataagttaatataaaaatat 366  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  5878107 aaaatttgaatttattttaagataaattaatataaaaatat 5878147  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 203
Target Start/End: Original strand, 34590375 - 34590477
Alignment:
Q  102 ttctagtatataaactacttctttgtacatttgttcatatctcaataataaaaattca-ttacttcattctcatcatctattatttcttctaattctctc 200  Q
    |||||||||||||||||     |||||||||||||||||| ||||||||| || |||| || ||  ||||| | |||||||| |||||||| ||||||||    
T  34590375 ttctagtatataaactaaactcttgtacatttgttcatatatcaataatacaatttcactttctcaattctaaccatctattctttcttctcattctctc 34590474  T
Q  201 taa 203  Q
    |||    
T  34590475 taa 34590477  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 367
Target Start/End: Complemental strand, 195529 - 195475
Alignment:
Q  313 gcaaaatatattcaaaatttgaatttattttaagataagttaatataaaaatatg 367  Q
    ||||||| |||||||||||| ||| |||||||| |||| ||||||||||||||||    
T  195529 gcaaaatttattcaaaattttaatgtattttaaaataaattaatataaaaatatg 195475  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 366
Target Start/End: Complemental strand, 11697429 - 11697392
Alignment:
Q  329 atttgaatttattttaagataagttaatataaaaatat 366  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  11697429 atttgaatttattttaaaataaattaatataaaaatat 11697392  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 355
Target Start/End: Complemental strand, 20167386 - 20167353
Alignment:
Q  322 attcaaaatttgaatttattttaagataagttaa 355  Q
    |||||||||||||||||||||||| |||||||||    
T  20167386 attcaaaatttgaatttattttaaaataagttaa 20167353  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 366
Target Start/End: Complemental strand, 51205704 - 51205667
Alignment:
Q  329 atttgaatttattttaagataagttaatataaaaatat 366  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  51205704 atttgaatttattttaaaataaattaatataaaaatat 51205667  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 369
Target Start/End: Original strand, 53741230 - 53741267
Alignment:
Q  332 tgaatttattttaagataagttaatataaaaatatgac 369  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  53741230 tgaatttattttaatataaattaatataaaaatatgac 53741267  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 182
Target Start/End: Original strand, 53786008 - 53786089
Alignment:
Q  102 ttctagtatataaactacttctttgtacatttgttcatatctcaataataaaaattca-ttacttcattctcatcatctatt 182  Q
    ||||||||||||| |||| |||||||||||||||  |||  ||||||||| || ||||  | ||| ||||||||||||||||    
T  53786008 ttctagtatataagctacctctttgtacatttgtatatacatcaataatacaatttcacattcttaattctcatcatctatt 53786089  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 366
Target Start/End: Original strand, 38293769 - 38293809
Alignment:
Q  326 aaaatttgaatttattttaagataagttaatataaaaatat 366  Q
    |||||||||||| ||||||| |||| |||||||||||||||    
T  38293769 aaaatttgaattaattttaaaataaattaatataaaaatat 38293809  T

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Target: scaffold0041 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 369
Target Start/End: Original strand, 57802 - 57849
Alignment:
Q  322 attcaaaatttgaatttattttaagataagttaatataaaaatatgac 369  Q
    ||||||||||| |||||||||||| |||| || |||||||||||||||    
T  57802 attcaaaatttaaatttattttaaaataaattgatataaaaatatgac 57849  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 369
Target Start/End: Complemental strand, 40915293 - 40915246
Alignment:
Q  322 attcaaaatttgaatttattttaagataagttaatataaaaatatgac 369  Q
    ||||||||||| |||||||||||| |||| || |||||||||||||||    
T  40915293 attcaaaatttaaatttattttaaaataaattgatataaaaatatgac 40915246  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 368
Target Start/End: Original strand, 35120156 - 35120209
Alignment:
Q  315 aaaatatattcaaaatttgaatttattttaagataagttaatataaaaatatga 368  Q
    ||||| |||| || |||| |||||||||||| |||| |||||||||||||||||    
T  35120156 aaaatttatttaacatttaaatttattttaaaataaattaatataaaaatatga 35120209  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 227
Target Start/End: Complemental strand, 34224345 - 34224256
Alignment:
Q  137 catatctcaataataaaaattcattacttcattctcatcatctattatttcttctaattctctctaaatcaacaaaatcacaaaaacccta 227  Q
    ||||||||||||||| ||| ||||||||||||||| ||| |  |||| ||||||| | ||||||||| |||  || |||||||| ||||||    
T  34224345 catatctcaataatacaaactcattacttcattcttatctttcatta-ttcttcttaatctctctaattcacaaacatcacaaagacccta 34224256  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 369
Target Start/End: Complemental strand, 513966 - 513926
Alignment:
Q  329 atttgaatttattttaagataagttaatataaaaatatgac 369  Q
    |||| |||||||||||| |||| ||||||||||||||||||    
T  513966 atttaaatttattttaaaataaattaatataaaaatatgac 513926  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 369
Target Start/End: Complemental strand, 8416347 - 8416290
Alignment:
Q  312 agcaaaatatattcaaaatttgaatttattttaagataagttaatataaaaatatgac 369  Q
    |||||||| | || || ||||||||||||||||  |||| ||||||||||||||||||    
T  8416347 agcaaaatttgtttaacatttgaatttattttattataaattaatataaaaatatgac 8416290  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 369
Target Start/End: Complemental strand, 34430499 - 34430459
Alignment:
Q  329 atttgaatttattttaagataagttaatataaaaatatgac 369  Q
    |||| |||||||||||| |||| ||||||||||||||||||    
T  34430499 atttaaatttattttaatataaattaatataaaaatatgac 34430459  T

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