View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0613_high_6 (Length: 312)
Name: NF0613_high_6
Description: NF0613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0613_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 32 - 280
Target Start/End: Original strand, 11876013 - 11876261
Alignment:
| Q |
32 |
atatatgactattcaaacatagcaaaaccagattttagaaaattatcgaccaacctactcatatctctctcttgaactttaagtaagattattttaattg |
131 |
Q |
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| T |
11876013 |
atatatgactattcaaacatagcaaaaccagattttagaacattatcgaccaacctactcatatctctctcttgaactgtaagtaagattattttaattg |
11876112 |
T |
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| Q |
132 |
ccaaatgctaagttgtcaagttattattattaatattatccaacatcacaaaacccaatctcataacggtagtttgcacgtttcattcatcaattgattc |
231 |
Q |
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| T |
11876113 |
ccaaatgctaagttgtcaagttattattattaatattatccaacatcacaaaacccaatctcataacggtagtttgcacgtttcattcatcaattgattc |
11876212 |
T |
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| Q |
232 |
catagttttgtgttacaagacgacattgatcagttgctaaaccctatgc |
280 |
Q |
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| T |
11876213 |
catagttttgtgttacaagacgacattgatcagttgctaaaccctatgc |
11876261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 155
Target Start/End: Complemental strand, 12361010 - 12360975
Alignment:
| Q |
120 |
ttattttaattgccaaatgctaagttgtcaagttat |
155 |
Q |
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| T |
12361010 |
ttattttaattgccaaatgctaagttgtcaagttat |
12360975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 264
Target Start/End: Original strand, 11886664 - 11886762
Alignment:
| Q |
166 |
attatccaacatcacaaaacccaatctcataacggtagtttgcacgtttcattcatcaattgattccatagttttgtgttacaagacgacattgatcag |
264 |
Q |
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| T |
11886664 |
attatccaacagcaccaaaccctatttcataacggtactctgcacgtttcattcatttactggtgccttagttttttgttacaaacagacattgatcag |
11886762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 272
Target Start/End: Original strand, 11899780 - 11899848
Alignment:
| Q |
204 |
tttgcacgtttcattcatcaattgattccatagttttgtgttacaagacgacattgatcagttgctaaa |
272 |
Q |
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|||||||||||||||||| |||| | || || ||||| |||||| ||||||||||||||||||||| |
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| T |
11899780 |
tttgcacgtttcattcatttattggtgccttaattttgggttacagaccgacattgatcagttgctaaa |
11899848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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