View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0613_low_1 (Length: 490)

Name: NF0613_low_1
Description: NF0613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0613_low_1
NF0613_low_1
[»] chr7 (21 HSPs)
chr7 (1-368)||(20478145-20478512)
chr7 (64-365)||(56536-56837)
chr7 (46-150)||(27665896-27666000)
chr7 (55-150)||(29996345-29996440)
chr7 (48-149)||(46439362-46439463)
chr7 (48-142)||(47386048-47386142)
chr7 (48-149)||(35693202-35693303)
chr7 (48-149)||(24228241-24228342)
chr7 (48-149)||(39859062-39859162)
chr7 (431-483)||(56902-56954)
chr7 (431-483)||(20478574-20478626)
chr7 (48-140)||(30940266-30940358)
chr7 (48-150)||(38473974-38474076)
chr7 (56-145)||(23906098-23906186)
chr7 (55-149)||(13168321-13168414)
chr7 (55-149)||(45359534-45359627)
chr7 (48-141)||(6602526-6602618)
chr7 (48-149)||(37115372-37115473)
chr7 (126-262)||(23168353-23168488)
chr7 (55-139)||(48852189-48852273)
chr7 (9-46)||(56441-56478)
[»] chr5 (17 HSPs)
chr5 (1-368)||(29621435-29621802)
chr5 (1-361)||(40780653-40781013)
chr5 (1-368)||(42473261-42473628)
chr5 (55-367)||(32135462-32135775)
chr5 (46-150)||(2854160-2854263)
chr5 (46-149)||(24541043-24541146)
chr5 (48-149)||(34327826-34327927)
chr5 (48-150)||(8539866-8539968)
chr5 (48-145)||(17574508-17574605)
chr5 (48-145)||(7268033-7268130)
chr5 (48-142)||(21841182-21841276)
chr5 (431-483)||(40781083-40781135)
chr5 (55-140)||(18624849-18624934)
chr5 (431-483)||(29621319-29621371)
chr5 (48-149)||(12737329-12737429)
chr5 (55-149)||(30468113-30468206)
chr5 (48-149)||(12800152-12800252)
[»] chr2 (20 HSPs)
chr2 (1-361)||(37020611-37020971)
chr2 (1-368)||(6785655-6786022)
chr2 (37-368)||(24207725-24208056)
chr2 (48-150)||(17696397-17696499)
chr2 (55-149)||(2767132-2767226)
chr2 (48-150)||(6797698-6797800)
chr2 (48-150)||(40560414-40560516)
chr2 (55-149)||(42519056-42519151)
chr2 (48-145)||(16763266-16763363)
chr2 (48-149)||(19908099-19908199)
chr2 (431-483)||(37021041-37021093)
chr2 (59-142)||(39455371-39455454)
chr2 (55-142)||(44709604-44709691)
chr2 (431-483)||(6785540-6785592)
chr2 (431-483)||(24207610-24207662)
chr2 (157-259)||(40097848-40097948)
chr2 (184-259)||(11315073-11315148)
chr2 (48-110)||(14388975-14389037)
chr2 (48-149)||(39664601-39664701)
chr2 (160-259)||(4416688-4416785)
[»] chr6 (14 HSPs)
chr6 (1-368)||(32455545-32455912)
chr6 (46-368)||(13613195-13613517)
chr6 (1-260)||(3456851-3457110)
chr6 (48-149)||(20523557-20523658)
chr6 (48-142)||(9398851-9398945)
chr6 (55-145)||(32438920-32439010)
chr6 (48-149)||(11355413-11355513)
chr6 (115-259)||(25171832-25171975)
chr6 (431-483)||(32455430-32455482)
chr6 (55-146)||(7049955-7050046)
chr6 (431-478)||(33268228-33268275)
chr6 (48-142)||(32517068-32517162)
chr6 (431-483)||(13613081-13613133)
chr6 (56-142)||(10568598-10568684)
[»] chr1 (22 HSPs)
chr1 (1-368)||(1442624-1442990)
chr1 (1-361)||(47012743-47013103)
chr1 (1-368)||(9121335-9121689)
chr1 (46-368)||(33602258-33602579)
chr1 (46-150)||(46583387-46583491)
chr1 (56-150)||(2869778-2869872)
chr1 (48-145)||(34777975-34778072)
chr1 (50-149)||(51896017-51896116)
chr1 (48-140)||(15104632-15104724)
chr1 (56-145)||(26225390-26225479)
chr1 (48-149)||(31238328-31238428)
chr1 (48-148)||(3013303-3013403)
chr1 (48-145)||(27087473-27087570)
chr1 (431-483)||(1443053-1443105)
chr1 (431-483)||(9121221-9121273)
chr1 (431-483)||(33602144-33602196)
chr1 (431-483)||(47012621-47012673)
chr1 (55-145)||(4855805-4855893)
chr1 (48-149)||(6818511-6818611)
chr1 (48-142)||(37344533-37344627)
chr1 (1-46)||(33602620-33602665)
chr1 (55-140)||(50555939-50556023)
[»] chr8 (21 HSPs)
chr8 (1-368)||(27406571-27406938)
chr8 (1-368)||(15305900-15306267)
chr8 (1-368)||(15486269-15486636)
chr8 (46-149)||(27691343-27691446)
chr8 (46-147)||(33708658-33708759)
chr8 (56-150)||(42941973-42942067)
chr8 (48-145)||(5036640-5036737)
chr8 (48-147)||(41042438-41042537)
chr8 (48-145)||(13108193-13108290)
chr8 (48-145)||(40339536-40339633)
chr8 (55-149)||(13485953-13486045)
chr8 (48-142)||(8609647-8609741)
chr8 (48-148)||(9673012-9673118)
chr8 (431-483)||(15306330-15306382)
chr8 (431-483)||(15486699-15486751)
chr8 (431-483)||(27406456-27406508)
chr8 (48-145)||(38547418-38547513)
chr8 (115-284)||(11721465-11721633)
chr8 (171-259)||(9184700-9184788)
chr8 (1-46)||(33708800-33708845)
chr8 (55-146)||(41825498-41825590)
[»] chr4 (15 HSPs)
chr4 (48-354)||(35404077-35404378)
chr4 (46-147)||(43519613-43519714)
chr4 (48-149)||(11255772-11255873)
chr4 (48-145)||(51012116-51012213)
chr4 (184-270)||(25993826-25993912)
chr4 (55-149)||(41761578-41761672)
chr4 (48-146)||(41781730-41781828)
chr4 (55-142)||(49523322-49523409)
chr4 (55-140)||(42980833-42980918)
chr4 (431-483)||(834630-834682)
chr4 (431-483)||(5438259-5438311)
chr4 (55-146)||(48646582-48646673)
chr4 (55-145)||(52868005-52868094)
chr4 (48-146)||(2693087-2693186)
chr4 (55-142)||(11601868-11601955)
[»] chr3 (29 HSPs)
chr3 (195-364)||(19987254-19987426)
chr3 (46-149)||(44794396-44794499)
chr3 (46-149)||(2660401-2660504)
chr3 (46-167)||(19987430-19987552)
chr3 (48-149)||(23293022-23293123)
chr3 (48-149)||(44276048-44276149)
chr3 (48-149)||(17515501-17515602)
chr3 (48-145)||(35905569-35905666)
chr3 (48-145)||(54898627-54898724)
chr3 (56-145)||(7884730-7884819)
chr3 (48-145)||(53190616-53190713)
chr3 (49-145)||(2226009-2226105)
chr3 (46-106)||(3152113-3152173)
chr3 (48-146)||(43765328-43765426)
chr3 (48-149)||(27898934-27899034)
chr3 (55-145)||(41977947-41978035)
chr3 (46-145)||(46112676-46112775)
chr3 (48-146)||(600900-600998)
chr3 (431-483)||(19987136-19987188)
chr3 (431-483)||(28626860-28626912)
chr3 (55-146)||(51684808-51684899)
chr3 (48-110)||(30599809-30599871)
chr3 (103-150)||(3151698-3151745)
chr3 (55-146)||(48830661-48830752)
chr3 (55-149)||(46197918-46198012)
chr3 (1-46)||(19987590-19987635)
chr3 (1-46)||(3152214-3152259)
chr3 (50-127)||(21348916-21348993)
chr3 (115-259)||(54092945-54093088)
[»] scaffold0058 (2 HSPs)
scaffold0058 (46-150)||(3483-3587)
scaffold0058 (46-150)||(4655-4759)
[»] scaffold0564 (1 HSPs)
scaffold0564 (48-145)||(8451-8548)
[»] scaffold1454 (1 HSPs)
scaffold1454 (55-145)||(1460-1550)
[»] scaffold0024 (1 HSPs)
scaffold0024 (55-107)||(37402-37454)


Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 20478145 - 20478512
Alignment:
Q  1 caaatcagtccctccgtctaaaatgtccgttagtagtgatgatgtgtcagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatattta 100  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  20478145 caaatcagtccctccgtccaaaatgtccgttaatagtgatgatgtgtcagccacgtgtacaaggactaaactgatggaaattgtcaaaattcgatattta 20478244  T
Q  101 acatttcagtctcttttttcctgtgtttccaattatacccctctattaccattcactttcatcctcacattttcactcagaagcatcaaacaagtcccta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20478245 acatttcagtctcttttttcctgtgtttccaattatacccctctattaccattcactttcatcctcacattttcactcagaagcatcaaacaagtcccta 20478344  T
Q  201 acctttcaccttcccgcctaaaccgtcatcctcttcacttcaccaaaatcatcatcatcatcggcgatcatgcttggaaaagattcggttttgaagtcag 300  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  20478345 acctttcaccttcccgcctaaactgtcaccctcttcacttcaccaaaatcatcatcatcaccggcgatcatccttggaaaagattcggttttgaagtcag 20478444  T
Q  301 atttcgtggtttgtcaaggtatagccattcaactttgttttccattcactcttgttcgtttctccctg 368  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  20478445 attttgtggtttgtcaaggtatagccattaaactttgttttccattcactcttgttcgtttgtccctg 20478512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 64 - 365
Target Start/End: Original strand, 56536 - 56837
Alignment:
Q  64 gactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctctattaccattcactttcatc 163  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  56536 gactaaattgatggaaatggtcaaaattcgatatttaacatttcagtctcttttttcctgtgttttcaattatacccctctattaccattctctttcatc 56635  T
Q  164 ctcacattttcactcagaagcatcaaacaagtccctaacctttcaccttcccgcctaaaccgtcatcctcttcacttcaccaaaatcatcatcatcatcg 263  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||| ||    
T  56636 ctcacattttcactcagaagcatcaaacatgtccctagcctttcaccttcccgcctaaattgtcaccctcttcacttcaccaaaatcatcatcatcaccg 56735  T
Q  264 gcgatcatgcttggaaaagattcggttttgaagtcagatttcgtggtttgtcaaggtatagccattcaactttgttttccattcactcttgttcgtttct 363  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56736 gcgatcatccttggaaaagattcggttttgaagtcagatttcgtggtttgtcaaggtatagccattcaactttgttttccattcactcttgttcgtttct 56835  T
Q  364 cc 365  Q
    ||    
T  56836 cc 56837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 46 - 150
Target Start/End: Complemental strand, 27666000 - 27665896
Alignment:
Q  46 gtcagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctcta 145  Q
    |||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27666000 gtcagccacgtgtacaaggactaaattgatggaaattgtcaaaattcgatatttaacatttcagtctcttttttcctgtgttttcaattatacccctcta 27665901  T
Q  146 ttacc 150  Q
    |||||    
T  27665900 ttacc 27665896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 55 - 150
Target Start/End: Complemental strand, 29996440 - 29996345
Alignment:
Q  55 gtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctctattacc 150  Q
    |||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  29996440 gtgtacaaggactaaattgatggaaatggtcaaaattcaatatttaacatttcagtctcttttttcctgtgtttccaattatactcctctattacc 29996345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 48 - 149
Target Start/End: Complemental strand, 46439463 - 46439362
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctctatt 147  Q
    |||||| ||||||| |||||||| |||||||||| || ||||||||| ||||||| ||||| | |  |||||||||||||||||||||||| ||||||||    
T  46439463 cagccacgtgtacatggactaaattgatggaaatggtaaaaattcgagatttaacttttcaatgtaatttttcctgtgtttccaattatacacctctatt 46439364  T
Q  148 ac 149  Q
    ||    
T  46439363 ac 46439362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 48 - 142
Target Start/End: Complemental strand, 47386142 - 47386048
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccct 142  Q
    |||||| |||||||||||||||| |||||||||| || ||||||||| ||||||| ||||||| |  |||||| || ||||||||||||||||||    
T  47386142 cagccacgtgtacaaggactaaattgatggaaattgtaaaaattcgagatttaacttttcagtgtaatttttcttgggtttccaattatacccct 47386048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 48 - 149
Target Start/End: Complemental strand, 35693303 - 35693202
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctctatt 147  Q
    |||||| |||||||||||||||| ||||| |||| || || |||||| ||||||| ||||||| |  |||||| ||||||||||||||||||| ||||||    
T  35693303 cagccacgtgtacaaggactaaattgatgaaaatggtaaagattcgagatttaacttttcagtataatttttcatgtgtttccaattatacccatctatt 35693204  T
Q  148 ac 149  Q
    ||    
T  35693203 ac 35693202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 48 - 149
Target Start/End: Complemental strand, 24228342 - 24228241
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctctatt 147  Q
    |||||| |||||| | ||||||| |||||||||| || |||||| || ||||||  |||||||||  ||||| |||||||| ||||||||||||||||||    
T  24228342 cagccacgtgtacgaagactaaattgatggaaattgtaaaaatttgagatttaatttttcagtctaattttttctgtgttttcaattatacccctctatt 24228243  T
Q  148 ac 149  Q
    ||    
T  24228242 ac 24228241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 48 - 149
Target Start/End: Complemental strand, 39859162 - 39859062
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctctatt 147  Q
    |||||| |||||||||||||||  |||||||||| || ||||||||| |||| || ||||| | |  |||||||||||||| ||||||||||||||||||    
T  39859162 cagccacgtgtacaaggactaatttgatggaaatggtaaaaattcgagatttgacttttcaatgtaatttttcctgtgttt-caattatacccctctatt 39859064  T
Q  148 ac 149  Q
    ||    
T  39859063 ac 39859062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 431 - 483
Target Start/End: Original strand, 56902 - 56954
Alignment:
Q  431 acttcatatcatgtttcgttgctgtttggttgtgattgttgtgtgtttgattg 483  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  56902 acttcatatcatgtttcgttgatgtttgtttgtgattgttgtgtgtttgattg 56954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 431 - 483
Target Start/End: Original strand, 20478574 - 20478626
Alignment:
Q  431 acttcatatcatgtttcgttgctgtttggttgtgattgttgtgtgtttgattg 483  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  20478574 acttcatatcatgtttcgttgttgtttgtttgtgattgttgtgtgtttgattg 20478626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 48 - 140
Target Start/End: Complemental strand, 30940358 - 30940266
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattataccc 140  Q
    |||||| |||||||||||||||| |||||||||| || ||||||||| ||||||| |||| || |  ||||| |||||||| |||||||||||    
T  30940358 cagccacgtgtacaaggactaaattgatggaaattgtaaaaattcgagatttaacttttcggtgtaattttttctgtgttttcaattataccc 30940266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 48 - 150
Target Start/End: Complemental strand, 38474076 - 38473974
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctctatt 147  Q
    |||||| |||| |||||||| || |||||||||| || ||||||| | ||||||| ||||||| |  ||||| ||||||||||||||||| | |||||||    
T  38474076 cagccacgtgtgcaaggactgaattgatggaaatggtaaaaattcaagatttaacttttcagtgtaattttttctgtgtttccaattatatctctctatt 38473977  T
Q  148 acc 150  Q
    |||    
T  38473976 acc 38473974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 56 - 145
Target Start/End: Complemental strand, 23906186 - 23906098
Alignment:
Q  56 tgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctcta 145  Q
    ||||||||||||||| |||||||||| || ||||||||| ||||||| ||||||| |   |||||  |||||||||||||||||||||||    
T  23906186 tgtacaaggactaaattgatggaaattgtaaaaattcgagatttaacttttcagtgt-aattttctcgtgtttccaattatacccctcta 23906098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 149
Target Start/End: Original strand, 13168321 - 13168414
Alignment:
Q  55 gtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctctattac 149  Q
    |||||||||||||||  |||||||||| || ||||||||| |||| |  ||||| | |  ||||| ||||| |||||||||||||||||||||||    
T  13168321 gtgtacaaggactaatttgatggaaatggtaaaaattcgagatttgaattttcaatgtaattttttctgtg-ttccaattatacccctctattac 13168414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 149
Target Start/End: Original strand, 45359534 - 45359627
Alignment:
Q  55 gtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctctattac 149  Q
    |||||||||||||||  |||||||||| || ||||||||| |||| || ||||| | |  ||||||||||| ||||||||||||||  |||||||    
T  45359534 gtgtacaaggactaatttgatggaaatggtaaaaattcgagatttgacttttcaatgtaatttttcctgtg-ttccaattatacccagctattac 45359627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 48 - 141
Target Start/End: Original strand, 6602526 - 6602618
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccc 141  Q
    |||||| |||||||||||||||  |||||||||| || ||||||||| ||||| | ||||||| |  |||||| |||  |||||||||||||||    
T  6602526 cagccacgtgtacaaggactaatttgatggaaatggtaaaaattcgagatttatcttttcagtgtaatttttcttgt-attccaattatacccc 6602618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 48 - 149
Target Start/End: Complemental strand, 37115473 - 37115372
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctctatt 147  Q
    |||||| |||||||||||||| | | ||| |||| || ||||||||| ||||||| ||| ||| |  ||||| | || |||| |||||||||||||||||    
T  37115473 cagccacgtgtacaaggactatattaatgaaaatggtaaaaattcgagatttaactttttagtgtaattttttccgtatttcaaattatacccctctatt 37115374  T
Q  148 ac 149  Q
    ||    
T  37115373 ac 37115372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 126 - 262
Target Start/End: Original strand, 23168353 - 23168488
Alignment:
Q  126 tttccaattatacccctctattaccattcactttcatcctcacattttcactcagaagcatcaaacaagtccctaacctttcaccttcccgcctaaaccg 225  Q
    ||||||||| |||||||||||||||  |  ||| |||||||||| |||||||||||  |||||||||  ||  | ||||||| ||||||||   |||||     
T  23168353 tttccaattttacccctctattacccataccttccatcctcaca-tttcactcagacacatcaaacacatcattgacctttctccttcccgttaaaacct 23168451  T
Q  226 tcatcctcttcacttcaccaaaatcatcatcatcatc 262  Q
    | | | |||| || || ||||||||||||||||||||    
T  23168452 ttaccatcttaacctctccaaaatcatcatcatcatc 23168488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 139
Target Start/End: Complemental strand, 48852273 - 48852189
Alignment:
Q  55 gtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacc 139  Q
    ||||||||| |||||  |||||||||| || ||||||| |  |||||| ||| ||| || ||||| |||||||||||||||||||    
T  48852273 gtgtacaagaactaatttgatggaaatggtaaaaattccagttttaactttttagtgtcattttttctgtgtttccaattatacc 48852189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 56441 - 56478
Alignment:
Q  9 tccctccgtctaaaatgtccgttagtagtgatgatgtg 46  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  56441 tccctccgtccaaaatgtctgttagtagtgatgatgtg 56478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 29621802 - 29621435
Alignment:
Q  1 caaatcagtccctccgtctaaaatgtccgttagtagtgatgatgtgtcagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatattta 100  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  29621802 caaatcagtccctccgtccaaaatgtccgttaatagtgatgatgtgtcagccacgtgtacaaggactaaactgatggaaattgtcaaaattcgatattta 29621703  T
Q  101 acatttcagtctcttttttcctgtgtttccaattatacccctctattaccattcactttcatcctcacattttcactcagaagcatcaaacaagtcccta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29621702 acatttcagtctcttttttcctgtgtttccaattatacccctctattaccattcactttcatcctcacattttcactcagaagcatcaaacaagtcccta 29621603  T
Q  201 acctttcaccttcccgcctaaaccgtcatcctcttcacttcaccaaaatcatcatcatcatcggcgatcatgcttggaaaagattcggttttgaagtcag 300  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  29621602 acctttcaccttcccgcctaaactgtcaccctcttcacttcaccaaaatcatcatcatcatcggcgatcatccttggaaaagattcggttttgaagtcag 29621503  T
Q  301 atttcgtggtttgtcaaggtatagccattcaactttgttttccattcactcttgttcgtttctccctg 368  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||    
T  29621502 attttgtggtttgtcaaggtatagccattaaactttgttttccattcactcttattcgtttgtccctg 29621435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 40780653 - 40781013
Alignment:
Q  1 caaatcagtccctccgtctaaaatgtccgttagtagtgatgatgtgtcagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatattta 100  Q
    |||||||||||||||||| |||||||||||||  ||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||| ||||||||    
T  40780653 caaatcagtccctccgtccaaaatgtccgttaacagtgatgatgtgtcagccacgtgtacagggactaaactgatggaaattgtcaaaatttgatattta 40780752  T
Q  101 acatttcagtctcttttttcctgtgtttccaattatacccctctattaccattcactttcatcctcacattttcactcagaagcatcaaacaagtcccta 200  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40780753 acatttcagtctcttttttcctgtgttttcaattatacccttctattaccattcactttcatcctcacattttcactcagaagcatcaaacaagtcccta 40780852  T
Q  201 acctttcaccttcccgcctaaaccgtcatcctcttcacttcaccaaaatcatcatcatcatcggcgatcatgcttggaaaagattcggttttgaagtcag 300  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  40780853 acctttcaccttcccgcctaaactgtcaccctcttcacttcaccaaaatcatcatcatcaccggcgatcatccttggaaaagattcggttttgaagtcag 40780952  T
Q  301 atttcgtggtttgtcaaggtatagccattcaactttgttttccattcactcttgttcgttt 361  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  40780953 attttgtggtttgtcaaggtatagccattcaactttgttttcctttcactcttgttcgttt 40781013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 42473628 - 42473261
Alignment:
Q  1 caaatcagtccctccgtctaaaatgtccgttagtagtgatgatgtgtcagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatattta 100  Q
    ||||||||||| |||||| |||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| | | |||    
T  42473628 caaatcagtccttccgtccaaaatgtccgttaacagtgatgatgtgtcagccacgtgtacaaggactaaactgatggaaatggtcaaaattcaaaaatta 42473529  T
Q  101 acatttcagtctcttttttcctgtgtttccaattatacccctctattaccattcactttcatcctcacattttcactcagaagcatcaaacaagtcccta 200  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  42473528 acatttcagtttcatttttcctgtgtttccaattatacccctctattaccattcactttcatcctcagattttcactcagaagcatcaaacaagtcccta 42473429  T
Q  201 acctttcaccttcccgcctaaaccgtcatcctcttcacttcaccaaaatcatcatcatcatcggcgatcatgcttggaaaagattcggttttgaagtcag 300  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  42473428 acctttcaccttcccgcctaaaccgtcaccctcttcacttcaccaaaatcatcatcatcaccggcgatcatccttggaaaagattcggttttgaagtcag 42473329  T
Q  301 atttcgtggtttgtcaaggtatagccattcaactttgttttccattcactcttgttcgtttctccctg 368  Q
    |||||||||||||||||||||  |||||||||||| |||||||||||||  |||||||||| ||||||    
T  42473328 atttcgtggtttgtcaaggtaacgccattcaacttcgttttccattcaccgttgttcgtttatccctg 42473261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 55 - 367
Target Start/End: Complemental strand, 32135775 - 32135462
Alignment:
Q  55 gtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctct-attaccatt 153  Q
    |||||||||||||||| ||||||||||||| ||||||||| ||||||| ||||||| |  |||||||||||||||||||||||||||||| |||| ||||    
T  32135775 gtgtacaaggactaaattgatggaaatagtaaaaattcgagatttaacttttcagtgtaatttttcctgtgtttccaattatacccctcttattatcatt 32135676  T
Q  154 cactttcatcctcacattttcactcagaagcatcaaacaagtccctaacctttcaccttcccgcctaaaccgtcatcctcttcacttcaccaaaatcatc 253  Q
      |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||| |||||||||||    
T  32135675 gcctttcatcctcacattttcactcaaaagcatcaaacaagtccctaacctttcaccttcccgcctaaaccgtcaccctctccgcttctccaaaatcatc 32135576  T
Q  254 atcatcatcggcgatcatgcttggaaaagattcggttttgaagtcagatttcgtggtttgtcaaggtatagccattcaactttgttttccattcactctt 353  Q
    ||||||| |||| ||||  ||| |||||||| ||||||||||||||| |||  |||||||||||||||  |||||||||||| |||||||||||||||||    
T  32135575 atcatcaccggcaatcaaccttagaaaagatacggttttgaagtcagtttttttggtttgtcaaggtaacgccattcaacttcgttttccattcactctt 32135476  T
Q  354 gttcgtttctccct 367  Q
    ||||||||||||||    
T  32135475 gttcgtttctccct 32135462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 46 - 150
Target Start/End: Complemental strand, 2854263 - 2854160
Alignment:
Q  46 gtcagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctcta 145  Q
    |||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  2854263 gtcagccacgtgtacaaggactaaattgatggaaatggtcaaaattcgatatttaacatttcagtat-ttttttcctgtgtttccaattatacccctcta 2854165  T
Q  146 ttacc 150  Q
    |||||    
T  2854164 ttacc 2854160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 46 - 149
Target Start/End: Complemental strand, 24541146 - 24541043
Alignment:
Q  46 gtcagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctcta 145  Q
    ||||||||  ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  24541146 gtcagccacatgtacaaggactaaattgatggaaatggtcaaaattcgatatttaacatttcagtcttttttttcctatgtttccaattatacccctcta 24541047  T
Q  146 ttac 149  Q
    ||||    
T  24541046 ttac 24541043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 48 - 149
Target Start/End: Original strand, 34327826 - 34327927
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctctatt 147  Q
    |||||| |||||||||||||||| |||||||||| || ||||||||| ||||||| |||| || |  |||||||||||||||||||||||||||||||||    
T  34327826 cagccacgtgtacaaggactaaattgatggaaatggtaaaaattcgagatttaacttttcggtgtaatttttcctgtgtttccaattatacccctctatt 34327925  T
Q  148 ac 149  Q
    ||    
T  34327926 ac 34327927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 48 - 150
Target Start/End: Original strand, 8539866 - 8539968
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctctatt 147  Q
    |||||| |||| ||||||||||| |||||||||| || ||||||||| ||||||| ||||||| |  |||||| ||||||||||||||||||||||||||    
T  8539866 cagccacgtgtgcaaggactaaattgatggaaatggtaaaaattcgagatttaacttttcagtgtaatttttcatgtgtttccaattatacccctctatt 8539965  T
Q  148 acc 150  Q
    |||    
T  8539966 acc 8539968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 48 - 145
Target Start/End: Original strand, 17574508 - 17574605
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctcta 145  Q
    |||||| |||||||||||||||| |||||||||| || ||||||||| | ||||| ||||||| |  |||||||||||||||||||||||||||||||    
T  17574508 cagccacgtgtacaaggactaaattgatggaaatggtaaaaattcgagacttaacttttcagtataatttttcctgtgtttccaattatacccctcta 17574605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 48 - 145
Target Start/End: Original strand, 7268033 - 7268130
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctcta 145  Q
    |||||| |||||||||||||||| |||||||||| || ||||||||| | ||||| ||||| | |  |||||||||||||||||||||||||||||||    
T  7268033 cagccacgtgtacaaggactaaattgatggaaattgtaaaaattcgaaacttaacttttcaatataatttttcctgtgtttccaattatacccctcta 7268130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 48 - 142
Target Start/End: Original strand, 21841182 - 21841276
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccct 142  Q
    |||||| |||||||||||||||| |||||||||| || ||||||||| | ||||| ||||| | |  ||||||||||||||||||||||||||||    
T  21841182 cagccacgtgtacaaggactaaattgatggaaatggtaaaaattcgagacttaacttttcaatataatttttcctgtgtttccaattatacccct 21841276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 431 - 483
Target Start/End: Original strand, 40781083 - 40781135
Alignment:
Q  431 acttcatatcatgtttcgttgctgtttggttgtgattgttgtgtgtttgattg 483  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  40781083 acttcatatcatgtttcgttgctgtttgtttgtgattgttgtgtgtttgattg 40781135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 55 - 140
Target Start/End: Complemental strand, 18624934 - 18624849
Alignment:
Q  55 gtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattataccc 140  Q
    |||||||||||||||  |||||||||| || ||||||||| ||||||| ||||||| || |||||  |||||||||||||||||||    
T  18624934 gtgtacaaggactaatttgatggaaatggtaaaaattcgagatttaacttttcagtgtcattttttatgtgtttccaattataccc 18624849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 431 - 483
Target Start/End: Complemental strand, 29621371 - 29621319
Alignment:
Q  431 acttcatatcatgtttcgttgctgtttggttgtgattgttgtgtgtttgattg 483  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  29621371 acttcatatcatgtttcgttgttgtttgtttgtgattgttgtgtgtttgattg 29621319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 149
Target Start/End: Original strand, 12737329 - 12737429
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctctatt 147  Q
    |||||| |||||||||||||||  |||||||||| || ||||||||| |||| || ||||| | |  |||||| |||| |||||||||||||||||||||    
T  12737329 cagccacgtgtacaaggactaatttgatggaaatggtaaaaattcgagatttgacttttcaatgtaatttttcatgtg-ttccaattatacccctctatt 12737427  T
Q  148 ac 149  Q
    ||    
T  12737428 ac 12737429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 55 - 149
Target Start/End: Complemental strand, 30468206 - 30468113
Alignment:
Q  55 gtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctctattac 149  Q
    |||||||||||||||  |||||||||| || |||||| || ||||||| ||||||| |  |||||| |||| ||||||||||||||| |||||||    
T  30468206 gtgtacaaggactaatttgatggaaatggtaaaaatttgagatttaacttttcagtgtaatttttcatgtg-ttccaattataccccgctattac 30468113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 48 - 149
Target Start/End: Original strand, 12800152 - 12800252
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctctatt 147  Q
    |||||| |||||||||||||||  |||||| ||| || ||||||||| |||| || ||||| | |  |||||| |||| |||||||||||||||||||||    
T  12800152 cagccacgtgtacaaggactaatttgatggcaatggtaaaaattcgagatttgacttttcaatgtaatttttcatgtg-ttccaattatacccctctatt 12800250  T
Q  148 ac 149  Q
    ||    
T  12800251 ac 12800252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 37020611 - 37020971
Alignment:
Q  1 caaatcagtccctccgtctaaaatgtccgttagtagtgatgatgtgtcagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatattta 100  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  37020611 caaatcagtccctccgtccaaaatgtccgttaatagtgatgatgtgtcagccacgtgtacaaggactaaactgatggaaattgtcaaaattcgatattta 37020710  T
Q  101 acatttcagtctcttttttcctgtgtttccaattatacccctctattaccattcactttcatcctcacattttcactcagaagcatcaaacaagtcccta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  37020711 acatttcagtctcttttttcctgtgtttccaattatacccctctattaccattcactttcatcctcacattttcactcagaagcatcacacaagtcccta 37020810  T
Q  201 acctttcaccttcccgcctaaaccgtcatcctcttcacttcaccaaaatcatcatcatcatcggcgatcatgcttggaaaagattcggttttgaagtcag 300  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||    
T  37020811 acctttcaccttcccgcctaaactgtcaccctcttcacttcaccaaaatcatcatcatcaccggcgatcatccttggaaaagattcggttttgaagttag 37020910  T
Q  301 atttcgtggtttgtcaaggtatagccattcaactttgttttccattcactcttgttcgttt 361  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  37020911 attttgtggtttgtcaaggtatagccattaaactttgttttccattcactcttgttcgttt 37020971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 6786022 - 6785655
Alignment:
Q  1 caaatcagtccctccgtctaaaatgtccgttagtagtgatgatgtgtcagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatattta 100  Q
    |||||||||||||||||| |||||||| ||||  ||||||||||||||||||| || |||||||||||||||||||||||| ||||||||| ||||||||    
T  6786022 caaatcagtccctccgtccaaaatgtctgttaacagtgatgatgtgtcagccacgtatacaaggactaaactgatggaaatggtcaaaatttgatattta 6785923  T
Q  101 acatttcagtctcttttttcctgtgtttccaattatacccctctattaccattcactttcatcctcacattttcactcagaagcatcaaacaagtcccta 200  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6785922 acatttcagtctcatttttcctgtgttttcaattatacccctctattaccattcactttcatcctcacattttcactcagaagcatcaaacaagtcccta 6785823  T
Q  201 acctttcaccttcccgcctaaaccgtcatcctcttcacttcaccaaaatcatcatcatcatcggcgatcatgcttggaaaagattcggttttgaagtcag 300  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||    
T  6785822 acctttcaccttcccgcctaaaccgtcaccctcttcacttcaccaaaatcatcatcatcatcggcgatcatccttggaaaagattcagttttcaagtcag 6785723  T
Q  301 atttcgtggtttgtcaaggtatagccattcaactttgttttccattcactcttgttcgtttctccctg 368  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  6785722 atttcgtggtttgtcaaggtatagacattcaactttgttttccattcactcttgttcgtttgtccctg 6785655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 37 - 368
Target Start/End: Complemental strand, 24208056 - 24207725
Alignment:
Q  37 tgatgatgtgtcagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattat 136  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  24208056 tgatgatgtgtcagccacgtgtacaaggactaaactgatggaaatggtcaaaattcgatatttaacatttcagtctcatttttcctgtgtttccaattat 24207957  T
Q  137 acccctctattaccattcactttcatcctcacattttcactcagaagcatcaaacaagtccctaacctttcaccttcccgcctaaaccgtcatcctcttc 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  24207956 acccctctattaccattcactttcatcctcacattttcactcagaagcatcaaacaagtccataacctttcaccttcccgcctaaaccgtcaccctcttc 24207857  T
Q  237 acttcaccaaaatcatcatcatcatcggcgatcatgcttggaaaagattcggttttgaagtcagatttcgtggtttgtcaaggtatagccattcaacttt 336  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  24207856 acttcaccaaaatcatcatcatcaccggcgatcatccttggaaaagattcggttttgaagtcagatttcgtggtttgtcaaggtatagacattcaacttt 24207757  T
Q  337 gttttccattcactcttgttcgtttctccctg 368  Q
    ||||||||||||||||||||||||| ||||||    
T  24207756 gttttccattcactcttgttcgtttgtccctg 24207725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 48 - 150
Target Start/End: Original strand, 17696397 - 17696499
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctctatt 147  Q
    ||||||||||||||||||||||| |||||||||| || ||||||||| ||||||| ||||||| |  |||||||||| ||| ||||||||||||||||||    
T  17696397 cagccatgtgtacaaggactaaattgatggaaatggtaaaaattcgagatttaacttttcagtgtaatttttcctgtcttttcaattatacccctctatt 17696496  T
Q  148 acc 150  Q
    |||    
T  17696497 acc 17696499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 55 - 149
Target Start/End: Original strand, 2767132 - 2767226
Alignment:
Q  55 gtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctctattac 149  Q
    ||||||| ||| |||| ||||||||||||| ||||||||| ||||||| ||||||| |  |||||||||||||||||||||||||||||||||||    
T  2767132 gtgtacatggattaaattgatggaaatagtaaaaattcgagatttaacttttcagtataatttttcctgtgtttccaattatacccctctattac 2767226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 48 - 150
Target Start/End: Original strand, 6797698 - 6797800
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctctatt 147  Q
    |||||| |||||||||||||||| ||||| |||| || ||||||||| ||||||| ||||||| |  |||||||||||||||||||||||||||| ||||    
T  6797698 cagccacgtgtacaaggactaaattgatgaaaatggtaaaaattcgagatttaacttttcagtgtaatttttcctgtgtttccaattatacccctttatt 6797797  T
Q  148 acc 150  Q
    |||    
T  6797798 acc 6797800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 48 - 150
Target Start/End: Original strand, 40560414 - 40560516
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctctatt 147  Q
    |||||| |||||||||||||||| |||||||||| || ||||||| | ||||||| ||||||| |  |||||| ||||||||||||||||||||||||||    
T  40560414 cagccacgtgtacaaggactaaattgatggaaatggtaaaaattcaagatttaacttttcagtgtaatttttcttgtgtttccaattatacccctctatt 40560513  T
Q  148 acc 150  Q
    |||    
T  40560514 acc 40560516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 55 - 149
Target Start/End: Complemental strand, 42519151 - 42519056
Alignment:
Q  55 gtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacattt-cagtctcttttttcctgtgtttccaattatacccctctattac 149  Q
    |||||||||||||||| |||||||||| || ||||||| | ||||||| ||| |||| |  |||||||||||||||||||||||||||||||||||    
T  42519151 gtgtacaaggactaaattgatggaaatggtaaaaattcaagatttaactttttcagtgtaatttttcctgtgtttccaattatacccctctattac 42519056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 48 - 145
Target Start/End: Original strand, 16763266 - 16763363
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctcta 145  Q
    |||||| |||||||||||||||| ||||| |||| || ||||||||| | ||||| ||||||| |  |||||| ||||||||||||||||||||||||    
T  16763266 cagccacgtgtacaaggactaaattgatgaaaatggtaaaaattcgagacttaacttttcagtataatttttcatgtgtttccaattatacccctcta 16763363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 48 - 149
Target Start/End: Complemental strand, 19908199 - 19908099
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctctatt 147  Q
    |||||| |||||||||||||||  |||||||||| || ||||||||| |||| || ||||| | |  |||||||||||||| ||||||||||||||||||    
T  19908199 cagccacgtgtacaaggactaatttgatggaaatggtaaaaattcgagatttgacttttcaatgtaatttttcctgtgttt-caattatacccctctatt 19908101  T
Q  148 ac 149  Q
    ||    
T  19908100 ac 19908099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 431 - 483
Target Start/End: Original strand, 37021041 - 37021093
Alignment:
Q  431 acttcatatcatgtttcgttgctgtttggttgtgattgttgtgtgtttgattg 483  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  37021041 acttcatatcatgtttcgttgttgtttgtttgtgattgttgtgtgtttgattg 37021093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 59 - 142
Target Start/End: Original strand, 39455371 - 39455454
Alignment:
Q  59 acaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccct 142  Q
    |||||||||||| |||||||||| || ||||||||| ||||||| ||||||| |  |||||  |||||||||||||||||||||    
T  39455371 acaaggactaaattgatggaaatggtaaaaattcgagatttaacttttcagtgtaatttttattgtgtttccaattatacccct 39455454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 55 - 142
Target Start/End: Complemental strand, 44709691 - 44709604
Alignment:
Q  55 gtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccct 142  Q
    |||||||||||||||| |||||||||| || |||||| || ||||||| ||||||| |  |||||||||||||| ||| |||||||||    
T  44709691 gtgtacaaggactaaattgatggaaatggtaaaaatttgaaatttaacttttcagtataatttttcctgtgttttcaactatacccct 44709604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 431 - 483
Target Start/End: Complemental strand, 6785592 - 6785540
Alignment:
Q  431 acttcatatcatgtttcgttgctgtttggttgtgattgttgtgtgtttgattg 483  Q
    |||||||||||||||| ||||||||||| ||||||||| ||||||||||||||    
T  6785592 acttcatatcatgtttggttgctgtttgtttgtgattgctgtgtgtttgattg 6785540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 431 - 483
Target Start/End: Complemental strand, 24207662 - 24207610
Alignment:
Q  431 acttcatatcatgtttcgttgctgtttggttgtgattgttgtgtgtttgattg 483  Q
    |||||||||||||||| |||| |||||| ||||||||||||||||||||||||    
T  24207662 acttcatatcatgttttgttgttgtttgtttgtgattgttgtgtgtttgattg 24207610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 157 - 259
Target Start/End: Original strand, 40097848 - 40097948
Alignment:
Q  157 tttcatcctcacattttcactcagaagcatcaaacaagtccctaacctttcaccttcccgcctaaaccgtcatcctcttcacttcaccaaaatcatcatc 256  Q
    ||||||||||||||||| | ||| || ||||||||| |||||| ||||||| |||||||||   |||| ||||| ||||||| || ||||||||||||||    
T  40097848 tttcatcctcacatttt-agtcataa-catcaaacatgtccctgacctttctccttcccgctagaaccttcatcatcttcacctctccaaaatcatcatc 40097945  T
Q  257 atc 259  Q
    |||    
T  40097946 atc 40097948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 184 - 259
Target Start/End: Complemental strand, 11315148 - 11315073
Alignment:
Q  184 catcaaacaagtccctaacctttcaccttcccgcctaaaccgtcatcctcttcacttcaccaaaatcatcatcatc 259  Q
    ||||||||| |||||| ||||||| |||||| ||  ||||| ||||| ||||||| || |||||||||||||||||    
T  11315148 catcaaacacgtccctgacctttctccttcctgctaaaaccttcatcatcttcacctctccaaaatcatcatcatc 11315073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 14389037 - 14388975
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagt 110  Q
    |||||| |||||||||||||||  |||||||||| || ||||||||| ||||||| |||||||    
T  14389037 cagccacgtgtacaaggactaacttgatggaaatggtaaaaattcgagatttaacttttcagt 14388975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 48 - 149
Target Start/End: Complemental strand, 39664701 - 39664601
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctctatt 147  Q
    |||||| |||||||||||||||  |||||||||| || ||||||||| |||| || ||||  | |  |||||| |||| ||||||||||||||| |||||    
T  39664701 cagccacgtgtacaaggactaatttgatggaaatggtaaaaattcgagatttgacttttccatgtaatttttcatgtg-ttccaattataccccgctatt 39664603  T
Q  148 ac 149  Q
    ||    
T  39664602 ac 39664601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 259
Target Start/End: Complemental strand, 4416785 - 4416688
Alignment:
Q  160 catcctcacattttcactcagaagcatcaaacaagtccctaacctttcaccttcccgcctaaaccgtcatcctcttcacttcaccaaaatcatcatcatc 259  Q
    |||||||||||||| | |||||| ||||||| | |||||| ||||||| |||| ||||  || || ||||| ||||||| || |||||||||||||||||    
T  4416785 catcctcacatttt-agtcagaa-catcaaaaacgtccctgacctttctcctttccgctaaatccttcatcatcttcacctctccaaaatcatcatcatc 4416688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 312; Significance: 1e-176; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 32455912 - 32455545
Alignment:
Q  1 caaatcagtccctccgtctaaaatgtccgttagtagtgatgatgtgtcagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatattta 100  Q
    |||||||||||||||||| ||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||    
T  32455912 caaatcagtccctccgtccaaaatgtccgttaataatgatgatgtgtcagccacgtgtacaaggactaaactgatggaaattatcaaaattcgatattta 32455813  T
Q  101 acatttcagtctcttttttcctgtgtttccaattatacccctctattaccattcactttcatcctcacattttcactcagaagcatcaaacaagtcccta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32455812 acatttcagtctcttttttcctgtgtttccaattatacccctctattaccattcactttcatcctcacattttcactcagaagcatcaaacaagtcccta 32455713  T
Q  201 acctttcaccttcccgcctaaaccgtcatcctcttcacttcaccaaaatcatcatcatcatcggcgatcatgcttggaaaagattcggttttgaagtcag 300  Q
    ||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||    
T  32455712 acctttcaccttcccgcctaaactgttaccctcttcacttcaccaaaatcatcatcatcaccggcgatcatccttggaaaagattcgattttgaagtcag 32455613  T
Q  301 atttcgtggtttgtcaaggtatagccattcaactttgttttccattcactcttgttcgtttctccctg 368  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  32455612 attttgtggtttgtcaaggtatagccattcaactttgttttccattcactcttgttcgtttgtccctg 32455545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 46 - 368
Target Start/End: Complemental strand, 13613517 - 13613195
Alignment:
Q  46 gtcagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctcta 145  Q
    ||||||||||||||||||||||||| |||||||||| || ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  13613517 gtcagccatgtgtacaaggactaaattgatggaaattgtaaaaattcgagatttaacatttcagtctcttttttcctgtgtttcaaattatacccctcta 13613418  T
Q  146 ttaccattcactttcatcctcacattttcactcagaagcatcaaacaagtccctaacctttcaccttcccgcctaaaccgtcatcctcttcacttcacca 245  Q
    ||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||    
T  13613417 ttaccattttctttcatcctcacattttcactcagaaccatcaaacaagtccctaacctttcaccttcccgcctaaaccgtcaccctctacacttctcca 13613318  T
Q  246 aaatcatcatcatcatcggcgatcatgcttggaaaagattcggttttgaagtcagatttcgtggtttgtcaaggtatagccattcaactttgttttccat 345  Q
    |||| || ||||||| |||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||    
T  13613317 aaattattatcatcaccggcgatcaaccttggaaaatattcggttttgaagtcagatttcgtggtttgtcaaggtaacaccattcaactttgttttccat 13613218  T
Q  346 tcactcttgttcgtttctccctg 368  Q
    ||||| ||||| |||||||||||    
T  13613217 tcacttttgtttgtttctccctg 13613195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 3456851 - 3457110
Alignment:
Q  1 caaatcagtccctccgtctaaaatgtccgttagtagtgatgatgtgtcagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatattta 100  Q
    |||||||||||||||||| ||||| ||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  3456851 caaatcagtccctccgtccaaaatatccgttaatagtgatgatatgtcagccacgtgtacaaggactaaactgatggaaattgtcaaaattcgatattta 3456950  T
Q  101 acatttcagtctcttttttcctgtgtttccaattatacccctctattaccattcactttcatcctcacattttcactcagaagcatcaaacaagtcccta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3456951 acatttcagtctcttttttcctgtgtttccaattatacccctctattaccattcactttcatcctcacattttcactcataagcatcaaacaagtcccta 3457050  T
Q  201 acctttcaccttcccgcctaaaccgtcatcctcttcacttcaccaaaatcatcatcatca 260  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  3457051 acctttcaccttcccgcctaaactgtcaccctcttcacttcaccaaaatcatcatcatca 3457110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 48 - 149
Target Start/End: Original strand, 20523557 - 20523658
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctctatt 147  Q
    |||||| |||||||||||||||| ||||| |||| || ||||||||| ||||||| ||||||| |  |||||||||||||||||||||||||||||||||    
T  20523557 cagccacgtgtacaaggactaaattgatgaaaatggtaaaaattcgagatttaacttttcagtgtaatttttcctgtgtttccaattatacccctctatt 20523656  T
Q  148 ac 149  Q
    ||    
T  20523657 ac 20523658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 48 - 142
Target Start/End: Original strand, 9398851 - 9398945
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccct 142  Q
    |||||| |||||||||||||||| ||||||||||  | ||||||||| ||||||| ||||||| |  |||||| |||||| ||||||||||||||    
T  9398851 cagccacgtgtacaaggactaaattgatggaaattataaaaattcgagatttaacttttcagtgtaatttttcttgtgttgccaattatacccct 9398945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 55 - 145
Target Start/End: Complemental strand, 32439010 - 32438920
Alignment:
Q  55 gtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctcta 145  Q
    |||||||||||||||| |||||||||| || ||| ||||| | ||||| ||||| | |  |||||||||||||||||||||||||||||||    
T  32439010 gtgtacaaggactaaattgatggaaatggtaaaatttcgagacttaacttttcaatataatttttcctgtgtttccaattatacccctcta 32438920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 48 - 149
Target Start/End: Original strand, 11355413 - 11355513
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctctatt 147  Q
    |||||| |||||||||||||||  |||||||||| || ||||||||| ||||||| ||||||| |  ||||||||||| ||||||||||||| | |||||    
T  11355413 cagccacgtgtacaaggactaatttgatggaaatggtaaaaattcgagatttaacttttcagtgtaatttttcctgtg-ttccaattatacctcgctatt 11355511  T
Q  148 ac 149  Q
    ||    
T  11355512 ac 11355513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 115 - 259
Target Start/End: Complemental strand, 25171975 - 25171832
Alignment:
Q  115 tttttcctgtgtttccaattatacccctctatta-ccattcactttcatcctcacattttcactcagaagcatcaaacaagtccctaacctttcaccttc 213  Q
    |||||||||| ||||||| | ||||||||||||| |||| |  || |||||||||| ||||| |||||| | ||||| | |||||| ||||||| |||||    
T  25171975 tttttcctgtttttccaaatttacccctctattacccatacctttccatcctcaca-tttcagtcagaa-cctcaaaaacgtccctgacctttctccttc 25171878  T
Q  214 ccgcctaaaccgtcatcctcttcacttcaccaaaatcatcatcatc 259  Q
    ||||  ||||| ||||| ||||||| || |||||||||| ||||||    
T  25171877 ccgctaaaaccttcatcatcttcacctctccaaaatcattatcatc 25171832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 431 - 483
Target Start/End: Complemental strand, 32455482 - 32455430
Alignment:
Q  431 acttcatatcatgtttcgttgctgtttggttgtgattgttgtgtgtttgattg 483  Q
    |||||||||||||||| |||| |||||| ||||||||||||||||||||||||    
T  32455482 acttcatatcatgtttagttgatgtttgtttgtgattgttgtgtgtttgattg 32455430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 55 - 146
Target Start/End: Original strand, 7049955 - 7050046
Alignment:
Q  55 gtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctctat 146  Q
    |||||||||||||||  |||||||||| || ||||||  |  || ||| ||||||| || ||||| | ||||||||||||||||||||||||    
T  7049955 gtgtacaaggactaatttgatggaaatggtaaaaattgcagtttgaacttttcagtgtcattttttccgtgtttccaattatacccctctat 7050046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 431 - 478
Target Start/End: Complemental strand, 33268275 - 33268228
Alignment:
Q  431 acttcatatcatgtttcgttgctgtttggttgtgattgttgtgtgttt 478  Q
    ||||||||||||||||||||| |||||| |||||| ||||||||||||    
T  33268275 acttcatatcatgtttcgttgatgtttgtttgtgagtgttgtgtgttt 33268228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 142
Target Start/End: Original strand, 32517068 - 32517162
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccct 142  Q
    |||||| ||||| |||||||||| |||||||||| || |||||| || ||||||| |||||   |  |||||  |||||||||||||||||||||    
T  32517068 cagccacgtgtataaggactaaattgatggaaatggtaaaaatttgagatttaacttttcatagtaatttttgttgtgtttccaattatacccct 32517162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 431 - 483
Target Start/End: Complemental strand, 13613133 - 13613081
Alignment:
Q  431 acttcatatcatgtttcgttgctgtttggttgtgattgttgtgtgtttgattg 483  Q
    ||||||||||||||||||||| |||||  |||||| |||| ||||||||||||    
T  13613133 acttcatatcatgtttcgttgatgtttttttgtgagtgttatgtgtttgattg 13613081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 142
Target Start/End: Original strand, 10568598 - 10568684
Alignment:
Q  56 tgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccct 142  Q
    ||||||||||||||  |||||||||| || ||||||  |  |||||| ||| ||| || ||||| | ||||||||||||||||||||    
T  10568598 tgtacaaggactaatttgatggaaatggtaaaaattgcaattttaactttttagtgtcattttttccgtgtttccaattatacccct 10568684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 1442624 - 1442990
Alignment:
Q  1 caaatcagtccctccgtctaaaatgtccgttagtagtgatgatgtgtcagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatattta 100  Q
    |||||||||||||||||| |||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  1442624 caaatcagtccctccgtccaaaatgtccgttaacagtgatgatgtgtcagccacgtgtacaaggactaaactgatggaaattgtcaaaattcgatattta 1442723  T
Q  101 acatttcagtctcttttttcctgtgtttccaattatacccctctattaccattcactttcatcctcacattttcactcagaagcatcaaacaagtcccta 200  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1442724 acatttcagtctcttttt-cctatgtttccaattatacccctctattaccattcactttcatcctcacattttcactcagaagcatcaaacaagtcccta 1442822  T
Q  201 acctttcaccttcccgcctaaaccgtcatcctcttcacttcaccaaaatcatcatcatcatcggcgatcatgcttggaaaagattcggttttgaagtcag 300  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||    
T  1442823 acctttcaccttcccgcctaaactgtcaccctcttcacttcaccaaaatcatcatcatcaccggcgatcatccttgcaaaagattcggttttgaagtcag 1442922  T
Q  301 atttcgtggtttgtcaaggtatagccattcaactttgttttccattcactcttgttcgtttctccctg 368  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1442923 attttgtggtttgtcaaggtatagccattcaactttgttttccattcactcttgttcgtttgtccctg 1442990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 47013103 - 47012743
Alignment:
Q  1 caaatcagtccctccgtctaaaatgtccgttagtagtgatgatgtgtcagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatattta 100  Q
    |||||||||||||||||| |||||||||||||  ||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||| ||||||||    
T  47013103 caaatcagtccctccgtccaaaatgtccgttaacagtgatgatgtgtcagccacgtgtacagggactaaactgatggaaattgtcaaaatttgatattta 47013004  T
Q  101 acatttcagtctcttttttcctgtgtttccaattatacccctctattaccattcactttcatcctcacattttcactcagaagcatcaaacaagtcccta 200  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  47013003 acatttcagtctcttttttcctgtgttttcaattatacccttctattaccattcactttcatcctcacattttcactcagaagcatcatacaagtcccta 47012904  T
Q  201 acctttcaccttcccgcctaaaccgtcatcctcttcacttcaccaaaatcatcatcatcatcggcgatcatgcttggaaaagattcggttttgaagtcag 300  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  47012903 acctttcaccttcccgcctaaactgtcaccctcttcacttcaccaaaatcatcatcatcatcggcgatcatccttggaaaagattcggttttgaagtcag 47012804  T
Q  301 atttcgtggtttgtcaaggtatagccattcaactttgttttccattcactcttgttcgttt 361  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  47012803 attttgtggtttgtcaaggtatagccatttaactttgttttccattcactcttgttcgttt 47012743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 9121689 - 9121335
Alignment:
Q  1 caaatcagtccctccgtctaaaatgtccgttagtagtgatgatgtgtcagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatattta 100  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||| |  |||||||||||||||||||||||||| ||||||||||||||||||    
T  9121689 caaatcagtccctccgtccaaaatgtccgttaatagtgatgatgtgtcagcaacatgtacaaggactaaactgatggaaattgtcaaaattcgatattta 9121590  T
Q  101 acatttcagtctcttttttcctgtgtttccaattatacccctctattaccattcactttcatcctcacattttcactcagaagcatcaaacaagtcccta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9121589 acatttcagtctcttttttcctgtgtttccaattatacccctctattaccattcactttcatcctcacattttcactcagaagcatcaaacaagtcccta 9121490  T
Q  201 acctttcaccttcccgcctaaaccgtcatcctcttcacttcaccaaaatcatcatcatcatcggcgatcatgcttggaaaagattcggttttgaagtcag 300  Q
    ||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||            
T  9121489 acctttcaccttcccgcctaaactgtaaccctcttcacttcaccaaaatcatcatcatcaccggcgatcatccttggaaaagattcggtttt-------- 9121398  T
Q  301 atttcgtggtttgtcaaggtatagccattcaactttgttttccattcactcttgttcgtttctccctg 368  Q
         |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  9121397 -----gtggtttgtcaaggtatagccattaaactttgttttccattcactcttgttcgtttgtccctg 9121335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 46 - 368
Target Start/End: Complemental strand, 33602579 - 33602258
Alignment:
Q  46 gtcagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctcta 145  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33602579 gtcagccatgtgtacaaggactaaattgatggaaatagtcaaaattcgagatttaacatttcagtctcttttttcctgtgtttccaattatacccctcta 33602480  T
Q  146 ttaccattcactttcatcctcacattttcactcagaagcatcaaacaagtccctaacctttcaccttcccgcctaaaccgtcatcctcttcacttcacca 245  Q
    ||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  33602479 ttaccattgtctttcatcctcacattttcactcataagcatcaaacaagtccctaacctttcaccttcccgcctaaaccgtcaccctattcacttcacca 33602380  T
Q  246 aaatcatcatcatcatcggcgatcatgcttggaaaagattcggttttgaagtcagatttcgtggtttgtcaaggtatagccattcaactttgttttccat 345  Q
    ||||||||||||||| || ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  33602379 aaatcatcatcatcaccgacgatcatccttggaaaagattcagttttgaagtcagatttcgtggtttgtcaaggtaacgccattcaactttgttttccat 33602280  T
Q  346 tcactcttgttcgtttctccctg 368  Q
    ||||||||| |||||||||||||    
T  33602279 tcactcttg-tcgtttctccctg 33602258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 46 - 150
Target Start/End: Complemental strand, 46583491 - 46583387
Alignment:
Q  46 gtcagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctcta 145  Q
    |||||||| |||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||    
T  46583491 gtcagccacgtgtacaaggactaaattgatgaaaatggtcaaaattcgatatttaacatttcagtctctcttttcatgtgttttcaattatacccctcta 46583392  T
Q  146 ttacc 150  Q
    |||||    
T  46583391 ttacc 46583387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 56 - 150
Target Start/End: Original strand, 2869778 - 2869872
Alignment:
Q  56 tgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctctattacc 150  Q
    ||||||||||||||| ||||||||||||| |||||| || |||| || ||||||| |  ||||||||||||||||||||||||||||||||||||    
T  2869778 tgtacaaggactaaattgatggaaatagtaaaaatttgagatttgacttttcagtgtaatttttcctgtgtttccaattatacccctctattacc 2869872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 48 - 145
Target Start/End: Complemental strand, 34778072 - 34777975
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctcta 145  Q
    |||||| |||||||||||||||| |||||||||| || ||||||||| | ||||| ||||||| |  |||||||||||||||||||||||||||||||    
T  34778072 cagccacgtgtacaaggactaaattgatggaaatggtaaaaattcgagacttaacttttcagtataatttttcctgtgtttccaattatacccctcta 34777975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 50 - 149
Target Start/End: Complemental strand, 51896116 - 51896017
Alignment:
Q  50 gccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctctattac 149  Q
    |||| |||||||||||||||| |||||||||| || ||||||||| ||||||| ||||||| |  ||||||| || ||||||||||||||||||||||||    
T  51896116 gccacgtgtacaaggactaaattgatggaaatggtaaaaattcgagatttaacttttcagtgtaatttttcccgtatttccaattatacccctctattac 51896017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 48 - 140
Target Start/End: Original strand, 15104632 - 15104724
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattataccc 140  Q
    |||||| |||||||||||||||  |||||||||| || ||||||||| ||||||| ||||||| || ||||| ||||||||||||||||||||    
T  15104632 cagccacgtgtacaaggactaatttgatggaaatggtaaaaattcgagatttaacttttcagtgtcattttttctgtgtttccaattataccc 15104724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 56 - 145
Target Start/End: Complemental strand, 26225479 - 26225390
Alignment:
Q  56 tgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctcta 145  Q
    ||||||||||||||| |||||||||| || ||||||||| | ||||| ||||| | |  |||||||||||||||||||||||||||||||    
T  26225479 tgtacaaggactaaattgatggaaatggtaaaaattcgaaacttaacttttcaatataatttttcctgtgtttccaattatacccctcta 26225390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 48 - 149
Target Start/End: Complemental strand, 31238428 - 31238328
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctctatt 147  Q
    |||||| |||||||||||||||  |||||||||| || ||||||||| ||||||| ||||||| |  ||||||||||| ||||||||||||||| |||||    
T  31238428 cagccacgtgtacaaggactaatttgatggaaatggtaaaaattcgagatttaacttttcagtgtaatttttcctgtg-ttccaattataccccgctatt 31238330  T
Q  148 ac 149  Q
    ||    
T  31238329 ac 31238328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 48 - 148
Target Start/End: Complemental strand, 3013403 - 3013303
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctctatt 147  Q
    |||||| |||||||||||||||| |||||||||| || |||||| || ||||||| ||||||| |  |||||||||||||| |||||||| | |||||||    
T  3013403 cagccacgtgtacaaggactaaattgatggaaatggtaaaaatttgagatttaacttttcagtgtaatttttcctgtgttttcaattataactctctatt 3013304  T
Q  148 a 148  Q
    |    
T  3013303 a 3013303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 48 - 145
Target Start/End: Original strand, 27087473 - 27087570
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctcta 145  Q
    |||||| ||||||||||||| || |||||||||| || ||||||||| | ||||| ||||| | |  ||||||||||||||||||||||| |||||||    
T  27087473 cagccacgtgtacaaggactgaattgatggaaatggtaaaaattcgagacttaacttttcaatataatttttcctgtgtttccaattatatccctcta 27087570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 431 - 483
Target Start/End: Original strand, 1443053 - 1443105
Alignment:
Q  431 acttcatatcatgtttcgttgctgtttggttgtgattgttgtgtgtttgattg 483  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  1443053 acttcatatcatgtttcgttgctgtttgtctgtgattgttgtgtgtttgattg 1443105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 431 - 483
Target Start/End: Complemental strand, 9121273 - 9121221
Alignment:
Q  431 acttcatatcatgtttcgttgctgtttggttgtgattgttgtgtgtttgattg 483  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  9121273 acttcatatcatgtttcgttgttgtttgtttgtgattgttgtgtgtttgattg 9121221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 431 - 483
Target Start/End: Complemental strand, 33602196 - 33602144
Alignment:
Q  431 acttcatatcatgtttcgttgctgtttggttgtgattgttgtgtgtttgattg 483  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  33602196 acttcatatcatgtttcgttgatgtttgtttgtgattgttgtgtgtttgattg 33602144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 431 - 483
Target Start/End: Complemental strand, 47012673 - 47012621
Alignment:
Q  431 acttcatatcatgtttcgttgctgtttggttgtgattgttgtgtgtttgattg 483  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  47012673 acttcatatcatgtttcgttgttgtttgtttgtgattgttgtgtgtttgattg 47012621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 55 - 145
Target Start/End: Complemental strand, 4855893 - 4855805
Alignment:
Q  55 gtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctcta 145  Q
    |||||||||||||||| |||||||||| || |||||| || | ||||| ||||||| |  |||||||  ||||||||||||||||||||||    
T  4855893 gtgtacaaggactaaattgatggaaatggtaaaaatttgagacttaacttttcagtataatttttcc--tgtttccaattatacccctcta 4855805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 48 - 149
Target Start/End: Complemental strand, 6818611 - 6818511
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctctatt 147  Q
    |||||| |||||||||||||||  |||| ||||| || |||||| || ||||||| ||||||| |  ||||||||||| |||||||||||| || |||||    
T  6818611 cagccacgtgtacaaggactaatttgatagaaatggtaaaaatttgagatttaacttttcagtgtaatttttcctgtg-ttccaattatactccgctatt 6818513  T
Q  148 ac 149  Q
    ||    
T  6818512 ac 6818511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 142
Target Start/End: Original strand, 37344533 - 37344627
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccct 142  Q
    |||||| ||||| |||||||||| |||||||||| || ||||||||| ||||||| |||||   |  |||||  |||||||||||||| ||||||    
T  37344533 cagccacgtgtataaggactaaattgatggaaatggtaaaaattcgagatttaacttttcatagtaatttttgttgtgtttccaattacacccct 37344627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 33602665 - 33602620
Alignment:
Q  1 caaatcagtccctccgtctaaaatgtccgttagtagtgatgatgtg 46  Q
    ||||| |||||||||||| |||| ||||||||||| ||||||||||    
T  33602665 caaattagtccctccgtccaaaaggtccgttagtaatgatgatgtg 33602620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 140
Target Start/End: Complemental strand, 50556023 - 50555939
Alignment:
Q  55 gtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattataccc 140  Q
    |||||||||||||||  |||||||||| || ||||||||| |||| || ||||| | |  |||||| |||| ||||||||||||||    
T  50556023 gtgtacaaggactaatttgatggaaatggtaaaaattcgagatttgacttttcaatgtaatttttcttgtg-ttccaattataccc 50555939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 27406938 - 27406571
Alignment:
Q  1 caaatcagtccctccgtctaaaatgtccgttagtagtgatgatgtgtcagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatattta 100  Q
    |||||||||| ||||||| |||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||  | | |||    
T  27406938 caaatcagtctctccgtccaaaatgtccgttaacagtgatgatgtgtcagccacgtgtacaaggactaaactgatggaaatggtcaaaatttaaaaatta 27406839  T
Q  101 acatttcagtctcttttttcctgtgtttccaattatacccctctattaccattcactttcatcctcacattttcactcagaagcatcaaacaagtcccta 200  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27406838 acatttcagtctcatttttcctgtgtttccaattatacccctctattaccattcactttcatcctcacattttcactcagaagcatcaaacaagtcccca 27406739  T
Q  201 acctttcaccttcccgcctaaaccgtcatcctcttcacttcaccaaaatcatcatcatcatcggcgatcatgcttggaaaagattcggttttgaagtcag 300  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  27406738 acctttcaccttcccgcctaaaccgtcacccttttcacttcaccaaaatcatcatcatcaccggcgatcatccttggaaaagattcggttttgaagtcag 27406639  T
Q  301 atttcgtggtttgtcaaggtatagccattcaactttgttttccattcactcttgttcgtttctccctg 368  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  27406638 atttcgtggtttgtcaaggtatagacattcaactttgttttccattcactcttgttcgtttatccctg 27406571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 15305900 - 15306267
Alignment:
Q  1 caaatcagtccctccgtctaaaatgtccgttagtagtgatgatgtgtcagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatattta 100  Q
    |||||||||||||||||| ||||| |||||||  ||||||||||||||||||| || |||||||||||||||||||||||| |||||||||| | | |||    
T  15305900 caaatcagtccctccgtccaaaatatccgttaacagtgatgatgtgtcagccacgtatacaaggactaaactgatggaaatggtcaaaattcaaaactta 15305999  T
Q  101 acatttcagtctcttttttcctgtgtttccaattatacccctctattaccattcactttcatcctcacattttcactcagaagcatcaaacaagtcccta 200  Q
    |||||| |||||| |||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15306000 acattttagtctcatttttcttgtgtttccaattataccactctattacgattcactttcatcctcacattttcactcagaagcatcaaacaagtcccta 15306099  T
Q  201 acctttcaccttcccgcctaaaccgtcatcctcttcacttcaccaaaatcatcatcatcatcggcgatcatgcttggaaaagattcggttttgaagtcag 300  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  15306100 acctttcaccttcccgccaaaaccgtcaccctcttcacttcaccaaaatcatcatcatcaccggcgatcatccttggaaaagattcggttttgaagtcag 15306199  T
Q  301 atttcgtggtttgtcaaggtatagccattcaactttgttttccattcactcttgttcgtttctccctg 368  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  15306200 atttcgtggtttgtcaaggtatagacattcaactttgttttccattcactcttgttcgtttgtccctg 15306267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 15486269 - 15486636
Alignment:
Q  1 caaatcagtccctccgtctaaaatgtccgttagtagtgatgatgtgtcagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatattta 100  Q
    |||||||||||||||||| ||||| |||||||  ||||||||||||||||||| || |||||||||||||||||||||||| |||||||||| | | |||    
T  15486269 caaatcagtccctccgtccaaaatatccgttaacagtgatgatgtgtcagccacgtatacaaggactaaactgatggaaatggtcaaaattcaaaactta 15486368  T
Q  101 acatttcagtctcttttttcctgtgtttccaattatacccctctattaccattcactttcatcctcacattttcactcagaagcatcaaacaagtcccta 200  Q
    |||||| |||||| |||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15486369 acattttagtctcatttttcttgtgtttccaattataccactctattacgattcactttcatcctcacattttcactcagaagcatcaaacaagtcccta 15486468  T
Q  201 acctttcaccttcccgcctaaaccgtcatcctcttcacttcaccaaaatcatcatcatcatcggcgatcatgcttggaaaagattcggttttgaagtcag 300  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  15486469 acctttcaccttcccgccaaaaccgtcaccctcttcacttcaccaaaatcatcatcatcaccggcgatcatccttggaaaagattcggttttgaagtcag 15486568  T
Q  301 atttcgtggtttgtcaaggtatagccattcaactttgttttccattcactcttgttcgtttctccctg 368  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  15486569 atttcgtggtttgtcaaggtatagacattcaactttgttttccattcactcttgttcgtttgtccctg 15486636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 46 - 149
Target Start/End: Original strand, 27691343 - 27691446
Alignment:
Q  46 gtcagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctcta 145  Q
    |||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27691343 gtcagccacgtgtacaaggactaaattgatggaaatggtcaaaattcgatatttaacatttcagtatcttttttcctgtgtttccaattatacccctcta 27691442  T
Q  146 ttac 149  Q
    ||||    
T  27691443 ttac 27691446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 46 - 147
Target Start/End: Complemental strand, 33708759 - 33708658
Alignment:
Q  46 gtcagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctcta 145  Q
    |||| ||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33708759 gtcaaccacgtgtacaaggactaaattgatggaaattgtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctcta 33708660  T
Q  146 tt 147  Q
    ||    
T  33708659 tt 33708658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 56 - 150
Target Start/End: Original strand, 42941973 - 42942067
Alignment:
Q  56 tgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctctattacc 150  Q
    ||||||||||||||| |||||||||| || ||||||||| ||||||| ||||||| |  |||||||| |||||||||||||||||||||||||||    
T  42941973 tgtacaaggactaaattgatggaaatggtaaaaattcgagatttaacttttcagtgtaatttttcctatgtttccaattatacccctctattacc 42942067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 48 - 145
Target Start/End: Original strand, 5036640 - 5036737
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctcta 145  Q
    |||||| |||||||||||||||| |||||||||| || ||||||||| ||||||| ||||||| |  |||||||||||||||||||||||| ||||||    
T  5036640 cagccacgtgtacaaggactaaattgatggaaatggtaaaaattcgagatttaacttttcagtgtaatttttcctgtgtttccaattatactcctcta 5036737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 48 - 147
Target Start/End: Complemental strand, 41042537 - 41042438
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctctatt 147  Q
    |||||| | |||||||||||||| |||||||||| || ||||||| | ||||||| ||||||| |  |||||||||||||||||||||||||||||||||    
T  41042537 cagccacgggtacaaggactaaattgatggaaattgtaaaaattcaagatttaacttttcagtgtaatttttcctgtgtttccaattatacccctctatt 41042438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 48 - 145
Target Start/End: Complemental strand, 13108290 - 13108193
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctcta 145  Q
    |||||| |||||||||||||||| |||||||||| || ||||||||| | ||||| ||||||| |  |||||||||||||| ||||||||||||||||    
T  13108290 cagccacgtgtacaaggactaaattgatggaaatggtaaaaattcgagacttaacttttcagtataatttttcctgtgttttcaattatacccctcta 13108193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 48 - 145
Target Start/End: Complemental strand, 40339633 - 40339536
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctcta 145  Q
    |||||| ||||||||||||||||  ||||||||| || ||||||||| ||||||| ||||||| |  |||| ||||||||| ||||||||||||||||    
T  40339633 cagccacgtgtacaaggactaaatggatggaaatggtaaaaattcgagatttaacttttcagtgtaattttccctgtgttttcaattatacccctcta 40339536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 55 - 149
Target Start/End: Complemental strand, 13486045 - 13485953
Alignment:
Q  55 gtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctctattac 149  Q
    |||||||||||||||| |||||||||| || ||||||||| ||||||| ||||| | |  |||||||  ||||||||||||||||||||||||||    
T  13486045 gtgtacaaggactaaattgatggaaatggtaaaaattcgagatttaacttttcaatgtaatttttcc--tgtttccaattatacccctctattac 13485953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 48 - 142
Target Start/End: Complemental strand, 8609741 - 8609647
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccct 142  Q
    |||||| |||||||||||||||| |||||||||| || ||||||||| | ||||| ||||| | |  |||||||| |||||||||||||||||||    
T  8609741 cagccacgtgtacaaggactaaattgatggaaatggtaaaaattcgagacttaacttttcattataatttttcctttgtttccaattatacccct 8609647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 48 - 148
Target Start/End: Complemental strand, 9673118 - 9673012
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctc----ttttttc--ctgtgtttccaattatacccc 141  Q
    |||||| |||||||||||||||  |||||||||| || ||||||||| ||||||| ||||||| ||    |||||||  |||||||||||||||||||||    
T  9673118 cagccacgtgtacaaggactaatttgatggaaatggtaaaaattcgagatttaacttttcagtgtcatttttttttcttctgtgtttccaattatacccc 9673019  T
Q  142 tctatta 148  Q
    |||||||    
T  9673018 tctatta 9673012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 431 - 483
Target Start/End: Original strand, 15306330 - 15306382
Alignment:
Q  431 acttcatatcatgtttcgttgctgtttggttgtgattgttgtgtgtttgattg 483  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  15306330 acttcatatcatgtttggttgctgtttgtttgtgattgttgtgtgtttgattg 15306382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 431 - 483
Target Start/End: Original strand, 15486699 - 15486751
Alignment:
Q  431 acttcatatcatgtttcgttgctgtttggttgtgattgttgtgtgtttgattg 483  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  15486699 acttcatatcatgtttggttgctgtttgtttgtgattgttgtgtgtttgattg 15486751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 431 - 483
Target Start/End: Complemental strand, 27406508 - 27406456
Alignment:
Q  431 acttcatatcatgtttcgttgctgtttggttgtgattgttgtgtgtttgattg 483  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  27406508 acttcatatcatgtttggttgctgtttgtttgtgattgttgtgtgtttgattg 27406456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 48 - 145
Target Start/End: Original strand, 38547418 - 38547513
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctcta 145  Q
    |||||| |||||||||||||||| ||||||||||  | ||||||||||| ||||| ||||||| |  |||||||   |||||||||||||||||||||    
T  38547418 cagccacgtgtacaaggactaaattgatggaaatgataaaaattcgatacttaacttttcagtataatttttcc--ggtttccaattatacccctcta 38547513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 115 - 284
Target Start/End: Complemental strand, 11721633 - 11721465
Alignment:
Q  115 tttttcctgtgtttccaattatacccctctattaccattcactttcatcctcacattttcactcagaagcatcaaacaagtccctaacctttcaccttcc 214  Q
    ||||| |||| ||| ||||| |||||||||||||||  |  ||| |||  ||||| |||||||| ||  ||||||| | |||||| | ||||| ||||||    
T  11721633 ttttttctgttttttcaattttacccctctattacccataccttccataatcaca-tttcactcggacacatcaaatacgtccctgatctttctccttcc 11721535  T
Q  215 cgcctaaaccgtcatcctcttcacttcaccaaaatcatcatcatcatcggcgatcatgcttggaaaagat 284  Q
    |||  ||||| ||| | ||||||| || |||||||||||||||||  |||||||||   |||||||||||    
T  11721534 cgctaaaaccttcaccttcttcacctctccaaaatcatcatcatctccggcgatcaacattggaaaagat 11721465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 259
Target Start/End: Original strand, 9184700 - 9184788
Alignment:
Q  171 tttcactcagaagcatcaaacaagtccctaacctttcaccttcccgcctaaaccgtcatcctcttcacttcaccaaaatcatcatcatc 259  Q
    |||||||||||  ||||||| | |||| | | ||||| |||||||||  ||||| ||||| ||||||| || |||||||||||||||||    
T  9184700 tttcactcagacacatcaaatacgtccatgatctttctccttcccgctaaaaccttcatcatcttcacctctccaaaatcatcatcatc 9184788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 33708845 - 33708800
Alignment:
Q  1 caaatcagtccctccgtctaaaatgtccgttagtagtgatgatgtg 46  Q
    |||||| ||||||||||| |||| |||||||| |||||||||||||    
T  33708845 caaatctgtccctccgtccaaaaggtccgttaatagtgatgatgtg 33708800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 146
Target Start/End: Complemental strand, 41825590 - 41825498
Alignment:
Q  55 gtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctc-ttttttcctgtgtttccaattatacccctctat 146  Q
    |||||||||||||||  |||| ||||| || ||||||  |  |||||| ||||||| || ||||||  |||||||| ||||||||||||||||    
T  41825590 gtgtacaaggactaatttgatagaaatggtaaaaattgcaattttaacttttcagtgtcatttttttatgtgtttctaattatacccctctat 41825498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 167; Significance: 3e-89; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 48 - 354
Target Start/End: Complemental strand, 35404378 - 35404077
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctctatt 147  Q
    |||||| |||||||| ||||||| |||||||||| || ||||||||||||||||| ||| ||| |  ||||||||||||||||||||||||||||         
T  35404378 cagccacgtgtacaatgactaaattgatggaaatggtaaaaattcgatatttaactttttagtgtaatttttcctgtgtttccaattatacccct----- 35404284  T
Q  148 accattcactttcatcctcacattttcactcagaagcatcaaacaagtccctaacctttcaccttcccgcctaaaccgtcatcctcttcacttcaccaaa 247  Q
    || |||  |||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||  |||| |||||||||||| |||||    
T  35404283 actattgtctttcatcctcacattttcacttagaagcatcaaataagtccctaaccttttaccttcccgcctaaattgtcaccctcttcacttctccaaa 35404184  T
Q  248 atcatcatcatcatcggcgatcatgcttggaaaagattcggttttgaagtcagatttcgtggtttgtcaaggtatagccattcaactttgttttccattc 347  Q
    ||||||||||||  |||||||||  |||||||||||| |||||||||||||||||| |||||||||||||||||  | |||||||||| |||||||||||    
T  35404183 atcatcatcatcgccggcgatcaaccttggaaaagatacggttttgaagtcagattacgtggtttgtcaaggtaacgacattcaacttcgttttccattc 35404084  T
Q  348 actcttg 354  Q
    |||||||    
T  35404083 actcttg 35404077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 46 - 147
Target Start/End: Original strand, 43519613 - 43519714
Alignment:
Q  46 gtcagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctcta 145  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  43519613 gtcagccatgtgtacaaggactaaattgatggaaatggtcaaaattcgatatttaacatttctgtctcttttttcctgtgttttcaattatacccctcta 43519712  T
Q  146 tt 147  Q
    ||    
T  43519713 tt 43519714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 48 - 149
Target Start/End: Complemental strand, 11255873 - 11255772
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctctatt 147  Q
    |||||| |||||||||||||||| |||||||||| || ||||||||| ||||||| ||||||| |  |||||||||||||| ||||||||||||||||||    
T  11255873 cagccacgtgtacaaggactaaattgatggaaattgtaaaaattcgagatttaacttttcagtgtaatttttcctgtgttttcaattatacccctctatt 11255774  T
Q  148 ac 149  Q
    ||    
T  11255773 ac 11255772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 48 - 145
Target Start/End: Original strand, 51012116 - 51012213
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctcta 145  Q
    |||||| |||||||||||||||| |||||||||| || ||||||||| | ||||| ||||||| |  |||||||| ||||||||||||||||||||||    
T  51012116 cagccacgtgtacaaggactaaattgatggaaatggtaaaaattcgagacttaacttttcagtataatttttcctatgtttccaattatacccctcta 51012213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 184 - 270
Target Start/End: Original strand, 25993826 - 25993912
Alignment:
Q  184 catcaaacaagtccctaacctttcaccttcccgcctaaaccgtcatcctcttcacttcaccaaaatcatcatcatcatcggcgatca 270  Q
    ||||||||| |||||||||||||| |||||||||| ||||| ||| | ||||||| || ||||||||||||||||| ||||||||||    
T  25993826 catcaaacacgtccctaacctttctccttcccgccaaaaccttcaccatcttcacctctccaaaatcatcatcatcttcggcgatca 25993912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 55 - 149
Target Start/End: Complemental strand, 41761672 - 41761578
Alignment:
Q  55 gtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctctattac 149  Q
    ||||||||||||||||  ||||||||| || ||||||| | ||||||| ||||| | |  |||||||||||||||||||||||||||||||||||    
T  41761672 gtgtacaaggactaaatcgatggaaatggtaaaaattcaagatttaacttttcaatgtaatttttcctgtgtttccaattatacccctctattac 41761578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 48 - 146
Target Start/End: Original strand, 41781730 - 41781828
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctctat 146  Q
    |||||||||||||||| |||||| |||||||||| || ||| ||||| ||||||| ||||| | || ||||| || |||||||||||||||||||||||    
T  41781730 cagccatgtgtacaagaactaaattgatggaaatggtaaaacttcgagatttaacttttcaatgtcattttttctatgtttccaattatacccctctat 41781828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 55 - 142
Target Start/End: Original strand, 49523322 - 49523409
Alignment:
Q  55 gtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccct 142  Q
    |||||||| ||||||| |||||||||| || ||||||||| ||||||| ||||||| |  ||| || |||||||||||||||||||||    
T  49523322 gtgtacaaagactaaattgatggaaatggtaaaaattcgagatttaacttttcagtgtaatttctcttgtgtttccaattatacccct 49523409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 55 - 140
Target Start/End: Original strand, 42980833 - 42980918
Alignment:
Q  55 gtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattataccc 140  Q
    |||||||| ||||||| |||||||||| || ||||||||| ||||||| ||||| | |  ||||| ||||||||||||||||||||    
T  42980833 gtgtacaaagactaaattgatggaaattgtaaaaattcgagatttaacttttcattgtaattttttctgtgtttccaattataccc 42980918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 431 - 483
Target Start/End: Original strand, 834630 - 834682
Alignment:
Q  431 acttcatatcatgtttcgttgctgtttggttgtgattgttgtgtgtttgattg 483  Q
    |||||||||||||||| ||| ||||||| ||||||||||||||||||||||||    
T  834630 acttcatatcatgtttggtttctgtttgtttgtgattgttgtgtgtttgattg 834682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 431 - 483
Target Start/End: Complemental strand, 5438311 - 5438259
Alignment:
Q  431 acttcatatcatgtttcgttgctgtttggttgtgattgttgtgtgtttgattg 483  Q
    |||||||||||||||| ||| ||||||| ||||||||||||||||||||||||    
T  5438311 acttcatatcatgtttggtttctgtttgtttgtgattgttgtgtgtttgattg 5438259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 55 - 146
Target Start/End: Complemental strand, 48646673 - 48646582
Alignment:
Q  55 gtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctctat 146  Q
    |||||||||||||||  |||||||||| || ||||||  |  |||||| ||||||| || ||||| | ||||||||||||||||||||||||    
T  48646673 gtgtacaaggactaatttgatggaaatggtaaaaattgtagttttaacttttcagtgtcattttttccgtgtttccaattatacccctctat 48646582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 55 - 145
Target Start/End: Complemental strand, 52868094 - 52868005
Alignment:
Q  55 gtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctcta 145  Q
    |||||||||||||||| |||||||||| || |||||| || ||||||| ||||||| |   |||||  |||||||||||||||||||||||    
T  52868094 gtgtacaaggactaaattgatggaaatggtaaaaatttgagatttaacttttcagtgt-aattttctcgtgtttccaattatacccctcta 52868005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 48 - 146
Target Start/End: Complemental strand, 2693186 - 2693087
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcg-atatttaacatttcagtctcttttttcctgtgtttccaattatacccctctat 146  Q
    |||||| |||||||||||||||  |||||||||| || |||| | | |  |||||| ||||||| || |||||  |||||||||||||||||||||||||    
T  2693186 cagccacgtgtacaaggactaatttgatggaaatggtaaaaaattgcagttttaacttttcagtgtcattttttatgtgtttccaattatacccctctat 2693087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 55 - 142
Target Start/End: Original strand, 11601868 - 11601955
Alignment:
Q  55 gtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccct 142  Q
    ||||| |||||||||  |||||||||| || ||||||  |  |||||| ||||||| || ||||| ||||||||||||||||||||||    
T  11601868 gtgtataaggactaatttgatggaaatggtaaaaattgcagttttaacttttcagtgtcattttttctgtgtttccaattatacccct 11601955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 131; Significance: 9e-68; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 195 - 364
Target Start/End: Complemental strand, 19987426 - 19987254
Alignment:
Q  195 tccctaacctttcaccttcccgcctaaaccgtcatcctcttcacttcaccaaaatcatcatcatcatc---ggcgatcatgcttggaaaagattcggttt 291  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||   ||||||||| ||||||||||||| | |||    
T  19987426 tccctaacctttcaccttcccgcctaaaccgtcaccctcttcacttcaccaaaatcatcatcatcatcaccggcgatcattcttggaaaagatttgattt 19987327  T
Q  292 tgaagtcagatttcgtggtttgtcaaggtatagccattcaactttgttttccattcactcttgttcgtttctc 364  Q
    ||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||    
T  19987326 tgaagtcagatttcgtggtttgtcaaggtaacaccattcaactttgttttccattcactcttgttcgtttctc 19987254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 46 - 149
Target Start/End: Original strand, 44794396 - 44794499
Alignment:
Q  46 gtcagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctcta 145  Q
    |||||||| |||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44794396 gtcagccacgtgtacaaggactaaattgatggaaatggtcaaaatttgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctcta 44794495  T
Q  146 ttac 149  Q
    ||||    
T  44794496 ttac 44794499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 46 - 149
Target Start/End: Original strand, 2660401 - 2660504
Alignment:
Q  46 gtcagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctcta 145  Q
    ||||||||  ||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2660401 gtcagccacttgtacaaggactaaattgatggaaattgtcaaaatttgatatttaacatttcagtctcttttttcctgtgttttcaattatacccctcta 2660500  T
Q  146 ttac 149  Q
    ||||    
T  2660501 ttac 2660504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 46 - 167
Target Start/End: Complemental strand, 19987552 - 19987430
Alignment:
Q  46 gtcagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctctt-ttttcctgtgtttccaattatacccctct 144  Q
    ||||| || |||||||||||||||| |||||||||| |||||||||||| ||||||| |||||||||||| |||| || |||||| ||||||||||||||    
T  19987552 gtcagtcacgtgtacaaggactaaattgatggaaatggtcaaaattcgagatttaacgtttcagtctcttttttttctatgtttctaattatacccctct 19987453  T
Q  145 attaccattcactttcatcctca 167  Q
    |||||||||  ||||||||||||    
T  19987452 attaccattgtctttcatcctca 19987430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 48 - 149
Target Start/End: Complemental strand, 23293123 - 23293022
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctctatt 147  Q
    |||||| |||||||||||||||| |||||||||| || ||||||||| ||||||| ||||||| |  |||||||||| ||||||||||||||||||||||    
T  23293123 cagccacgtgtacaaggactaaattgatggaaatggtaaaaattcgagatttaacttttcagtgtaatttttcctgtatttccaattatacccctctatt 23293024  T
Q  148 ac 149  Q
    ||    
T  23293023 ac 23293022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 48 - 149
Target Start/End: Complemental strand, 44276149 - 44276048
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctctatt 147  Q
    |||||| |||||||||||||||| |||||||||| || ||||||||| ||||||| ||||||| |  |||||||||||||| ||||||||||||||||||    
T  44276149 cagccacgtgtacaaggactaaattgatggaaatggtaaaaattcgagatttaacttttcagtgtaatttttcctgtgttttcaattatacccctctatt 44276050  T
Q  148 ac 149  Q
    ||    
T  44276049 ac 44276048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 48 - 149
Target Start/End: Original strand, 17515501 - 17515602
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctctatt 147  Q
    |||||| |||||||||||||||| |||||||||| || |||||| || ||||||| ||||||| |  ||||||||||||||||||||||| |||||||||    
T  17515501 cagccacgtgtacaaggactaaattgatggaaatggtaaaaatttgagatttaacttttcagtgtaatttttcctgtgtttccaattatatccctctatt 17515600  T
Q  148 ac 149  Q
    ||    
T  17515601 ac 17515602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 48 - 145
Target Start/End: Complemental strand, 35905666 - 35905569
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctcta 145  Q
    |||||| |||||||||||||||| |||||||||| || ||||||||| | ||||| ||||||| |  |||||||||||||||||||||||||||||||    
T  35905666 cagccacgtgtacaaggactaaattgatggaaattgtaaaaattcgagacttaacttttcagtataatttttcctgtgtttccaattatacccctcta 35905569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 48 - 145
Target Start/End: Original strand, 54898627 - 54898724
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctcta 145  Q
    |||||| |||||||||||||||| |||||||||| || ||||||||| | ||||| ||||||| |  |||||| ||||||||||||||||||||||||    
T  54898627 cagccacgtgtacaaggactaaattgatggaaatggtaaaaattcgagacttaacttttcagtataatttttcatgtgtttccaattatacccctcta 54898724  T

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Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 56 - 145
Target Start/End: Complemental strand, 7884819 - 7884730
Alignment:
Q  56 tgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctcta 145  Q
    |||| |||||||||| |||||||||| || ||||||||| | ||||| ||||||| |  |||||||||||||||||||||||||||||||    
T  7884819 tgtataaggactaaattgatggaaatggtaaaaattcgagacttaacttttcagtataatttttcctgtgtttccaattatacccctcta 7884730  T

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Target: chr3; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 48 - 145
Target Start/End: Complemental strand, 53190713 - 53190616
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctcta 145  Q
    |||||| |||||||||||||||| |||||||||| || |||||| || | ||||| ||||||| |  ||||||||||||||||| |||||||||||||    
T  53190713 cagccacgtgtacaaggactaaattgatggaaatggtaaaaatttgagacttaacttttcagtataatttttcctgtgtttccagttatacccctcta 53190616  T

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Target: chr3; HSP #12
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 49 - 145
Target Start/End: Complemental strand, 2226105 - 2226009
Alignment:
Q  49 agccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctcta 145  Q
    ||||| |||||||||||||||| |||||||||||||  |||||||| | ||||| ||| ||| |   ||||||||||||||||||||||||||||||    
T  2226105 agccacgtgtacaaggactaaattgatggaaatagtacaaattcgagacttaacttttaagtataaattttcctgtgtttccaattatacccctcta 2226009  T

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Target: chr3; HSP #13
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 3152173 - 3152113
Alignment:
Q  46 gtcagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacattt 106  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  3152173 gtcagccacgtgtacaaggactaaattgatggaaatagtcaaaattcgatatttaaaattt 3152113  T

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Target: chr3; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 48 - 146
Target Start/End: Original strand, 43765328 - 43765426
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctctat 146  Q
    |||||| |||||||| ||||||| |||||||||| || |||| |||| ||||||| ||||| | |  ||||| ||||||||||||||||||||||||||    
T  43765328 cagccacgtgtacaatgactaaattgatggaaatggtaaaaaatcgagatttaacttttcaatgtaattttttctgtgtttccaattatacccctctat 43765426  T

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Target: chr3; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 48 - 149
Target Start/End: Complemental strand, 27899034 - 27898934
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctctatt 147  Q
    ||||||||||||||||||||||  |||||||||| || ||||||||| |||| || ||||| | |  ||||||||||| ||||||||||||||| |||||    
T  27899034 cagccatgtgtacaaggactaatttgatggaaatggtaaaaattcgagatttgacttttcaatgtaatttttcctgtg-ttccaattataccccgctatt 27898936  T
Q  148 ac 149  Q
    ||    
T  27898935 ac 27898934  T

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Target: chr3; HSP #16
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 55 - 145
Target Start/End: Original strand, 41977947 - 41978035
Alignment:
Q  55 gtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctcta 145  Q
    |||||||||||||||| |||||||||| || ||||||||| | ||||| ||||||| |  |||||||  ||||||||||||||||||||||    
T  41977947 gtgtacaaggactaaattgatggaaatggtaaaaattcgagacttaacttttcagtataatttttcc--tgtttccaattatacccctcta 41978035  T

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Target: chr3; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 46 - 145
Target Start/End: Original strand, 46112676 - 46112775
Alignment:
Q  46 gtcagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctcta 145  Q
    ||||| || |||||||| ||||||| |||||||||| || ||||||| | ||||||| ||||||| || |||||  ||||||||||| ||||||||||||    
T  46112676 gtcagtcacgtgtacaaagactaaattgatggaaatggtaaaaattcaagatttaacttttcagtgtcattttttatgtgtttccaactatacccctcta 46112775  T

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Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 48 - 146
Target Start/End: Original strand, 600900 - 600998
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctctat 146  Q
    |||||| |||||||||||||||| | |||||||| || |||||| || ||||||| ||||||  || |||||  | |||||||||||||||||||||||    
T  600900 cagccacgtgtacaaggactaaattaatggaaatggtaaaaatttgagatttaacttttcagagtcattttttatatgtttccaattatacccctctat 600998  T

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Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 431 - 483
Target Start/End: Complemental strand, 19987188 - 19987136
Alignment:
Q  431 acttcatatcatgtttcgttgctgtttggttgtgattgttgtgtgtttgattg 483  Q
    |||| |||||||||||||||| |||||| ||||||||||||||||||||||||    
T  19987188 actttatatcatgtttcgttgatgtttgtttgtgattgttgtgtgtttgattg 19987136  T

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Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 431 - 483
Target Start/End: Complemental strand, 28626912 - 28626860
Alignment:
Q  431 acttcatatcatgtttcgttgctgtttggttgtgattgttgtgtgtttgattg 483  Q
    |||||||||||||||| ||| ||||||| ||||||||||||||||||||||||    
T  28626912 acttcatatcatgtttggtttctgtttgtttgtgattgttgtgtgtttgattg 28626860  T

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Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 55 - 146
Target Start/End: Original strand, 51684808 - 51684899
Alignment:
Q  55 gtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctctat 146  Q
    |||||||||||||||  |||||||||| || ||||||  |  |||||| ||||||| || ||||| |||||||| |||||||||||||||||    
T  51684808 gtgtacaaggactaatttgatggaaatggtaaaaattgcaggtttaacttttcagtgtcattttttctgtgttttcaattatacccctctat 51684899  T

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Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 30599871 - 30599809
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagt 110  Q
    |||||| |||||||||||||||| |||||||||| || ||||||||| ||||||| |||||||    
T  30599871 cagccacgtgtacaaggactaaattgatggaaatggtaaaaattcgagatttaacttttcagt 30599809  T

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Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 103 - 150
Target Start/End: Complemental strand, 3151745 - 3151698
Alignment:
Q  103 atttcagtctcttttttcctgtgtttccaattatacccctctattacc 150  Q
    |||| |||||||||| || |||||||||||||||||||||||||||||    
T  3151745 atttaagtctcttttatcttgtgtttccaattatacccctctattacc 3151698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 55 - 146
Target Start/End: Complemental strand, 48830752 - 48830661
Alignment:
Q  55 gtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctctat 146  Q
    |||||||||||||||  |||||||||| || ||||||  |  |||||| ||||| | || ||||| | ||||||||||||||||||||||||    
T  48830752 gtgtacaaggactaatttgatggaaatggtaaaaattgtagttttaacttttcattatcattttttccgtgtttccaattatacccctctat 48830661  T

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Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 149
Target Start/End: Original strand, 46197918 - 46198012
Alignment:
Q  55 gtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctctattac 149  Q
    |||||||||||||||| |||||||||| || |||||||||  |||||| ||||| | |  ||||| || |||||||||||  |||||| ||||||    
T  46197918 gtgtacaaggactaaattgatggaaatggtaaaaattcgagctttaacttttcaatgtaattttttctatgtttccaattgaacccctatattac 46198012  T

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Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 19987635 - 19987590
Alignment:
Q  1 caaatcagtccctccgtctaaaatgtccgttagtagtgatgatgtg 46  Q
    |||||||||||||||||| |||| ||| ||||||||||||||||||    
T  19987635 caaatcagtccctccgtccaaaaggtctgttagtagtgatgatgtg 19987590  T

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Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 3152259 - 3152214
Alignment:
Q  1 caaatcagtccctccgtctaaaatgtccgttagtagtgatgatgtg 46  Q
    |||||| ||||||||||| |||| |||||||| |||||||||||||    
T  3152259 caaatccgtccctccgtccaaaaggtccgttaatagtgatgatgtg 3152214  T

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Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 127
Target Start/End: Original strand, 21348916 - 21348993
Alignment:
Q  50 gccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtt 127  Q
    |||| |||||||| ||||||| ||||| |||| || ||||||||| ||||||  ||||||| |  |||||||||||||    
T  21348916 gccacgtgtacaaagactaaattgatgaaaatggtaaaaattcgagatttaatttttcagtgtaatttttcctgtgtt 21348993  T

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Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 259
Target Start/End: Original strand, 54092945 - 54093088
Alignment:
Q  115 tttttcctgtgtttccaattatacccctctattacc-attcactttcatcctcacattttcactcagaagcatcaaacaagtccctaacctttcaccttc 213  Q
    |||||| ||| |||| || | ||||||||||||||| || || || ||||||||||||| || ||| || ||| ||| | |||| | ||||||| |||||    
T  54092945 tttttcatgtttttctaaatttacccctctattacccatacatttccatcctcacattt-cagtcacaa-cataaaaaacgtccatgacctttctccttc 54093042  T
Q  214 ccgcctaaaccgtcatcctcttcacttcaccaaaatcatcatcatc 259  Q
    ||||  ||||| ||||| | ||||| || |||||||||||||||||    
T  54093043 ccgctaaaaccttcatcattttcacctctccaaaatcatcatcatc 54093088  T

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Target: scaffold0058 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 46 - 150
Target Start/End: Original strand, 3483 - 3587
Alignment:
Q  46 gtcagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctcta 145  Q
    |||||||| |||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3483 gtcagccacgtgtacaaagactaaattgatggaaatggtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttcaaattatacccctcta 3582  T
Q  146 ttacc 150  Q
    |||||    
T  3583 ttacc 3587  T

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Target: scaffold0058; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 46 - 150
Target Start/End: Original strand, 4655 - 4759
Alignment:
Q  46 gtcagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctcta 145  Q
    |||||||| |||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4655 gtcagccacgtgtacaaagactaaattgatggaaatggtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttcaaattatacccctcta 4754  T
Q  146 ttacc 150  Q
    |||||    
T  4755 ttacc 4759  T

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Target: scaffold0564 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 48 - 145
Target Start/End: Original strand, 8451 - 8548
Alignment:
Q  48 cagccatgtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctcta 145  Q
    |||||| ||||||||| |||||| |||||||||| || ||||||||| ||||||| ||||||| |  |||||||||||||||||||||||||||||||    
T  8451 cagccacgtgtacaagtactaaattgatggaaatggtaaaaattcgagatttaacttttcagtgtaatttttcctgtgtttccaattatacccctcta 8548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1454 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold1454
Description:

Target: scaffold1454; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 55 - 145
Target Start/End: Original strand, 1460 - 1550
Alignment:
Q  55 gtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttcagtctcttttttcctgtgtttccaattatacccctcta 145  Q
    |||||||||||||||| |||||||||| || ||||||| | | ||||| ||||| | | ||||||||||||||||||||||||||||||||    
T  1460 gtgtacaaggactaaattgatggaaatggtaaaaattcaagacttaacttttcaatatattttttcctgtgtttccaattatacccctcta 1550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 37402 - 37454
Alignment:
Q  55 gtgtacaaggactaaactgatggaaatagtcaaaattcgatatttaacatttc 107  Q
    |||||||||||||||  |||||||||| || ||||||||| ||||||| ||||    
T  37402 gtgtacaaggactaatttgatggaaattgtaaaaattcgaaatttaacttttc 37454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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