View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0613_low_10 (Length: 367)
Name: NF0613_low_10
Description: NF0613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0613_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 12 - 337
Target Start/End: Original strand, 36174666 - 36174991
Alignment:
| Q |
12 |
atgaaagaagttaataatctaccaattcaaaggacgttttaggtattagtacttcttttaacacacaaggctggcacaccaatttctgttaccatatggc |
111 |
Q |
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| T |
36174666 |
atgaaagaagttaataatctaccaattcaaaggacgttttaggtattagtacttcttttaacacacaaggctggcacaccaatttctgttaccatatggc |
36174765 |
T |
|
| Q |
112 |
tgaccagtttgatatacatagctggagaagttaccactattgttttcttcnnnnnnnnntaccactattgtattgtttgtattttgaaaaatattaacta |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
36174766 |
tgaccagtttgatatacatagctggagaagttaccactattgttttcttcaaaaaaaaataccactattgtattgtttgtattttgaaaaatattaacta |
36174865 |
T |
|
| Q |
212 |
gttaagcaatatatctctaattagtttatccatctaaaacaaattcatctaaaacaaggataatggataagcatatcttaaaatgttttagtgaagttat |
311 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
36174866 |
gttaagcaatatatctctaattagtttatccatctgaaacaaactcatctaaaacaaggataatggataagcatatctttaaatgttttagtgaagttat |
36174965 |
T |
|
| Q |
312 |
gtaaattgtttatgtgatgtctataa |
337 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
36174966 |
gtaaattgtttatgtgatgtctataa |
36174991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 2801407 - 2801318
Alignment:
| Q |
12 |
atgaaagaagttaataatctaccaattcaaaggacgttttaggt-------attagtacttcttttaacacacaaggctggcacaccaat |
94 |
Q |
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|||||||||||||||| |||||||| || ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
2801407 |
atgaaagaagttaatattctaccaactcgaaggacgttttaggtattattaattagtacttcttttaatacacaaggctggcacaccaat |
2801318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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