View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0613_low_12 (Length: 335)
Name: NF0613_low_12
Description: NF0613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0613_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 7e-80; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 57 - 207
Target Start/End: Complemental strand, 35656785 - 35656635
Alignment:
| Q |
57 |
cttttgttggttttcccactcgttctttagatcttaagttgacaacaaaaatctgaggtattccttgagatatatattctatttctacttctccttcgtt |
156 |
Q |
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| T |
35656785 |
cttttgttggttttcccactcgttctttagatcttaagttgacaacaaaaatctgaggtattccttgagatatatattctatttctacttctccttcgtt |
35656686 |
T |
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| Q |
157 |
tatatttgcattagatgtaatatgtaatattacaagcatctaataatttga |
207 |
Q |
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| T |
35656685 |
tatatttgcattagatgtaatatgtaatattacaagcatctaataatttga |
35656635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 35656844 - 35656800
Alignment:
| Q |
21 |
acatcatcatggatcccctcatcatgttatttcctgcttttgttg |
65 |
Q |
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| T |
35656844 |
acatcatcatggatcccctcatcatgttatttcctgcttttgttg |
35656800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 293 - 335
Target Start/End: Complemental strand, 35656551 - 35656509
Alignment:
| Q |
293 |
atacaaaatattgcttgcatttttatcaaaaccatagctctta |
335 |
Q |
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| T |
35656551 |
atacaaaatattgcttgcatttttatcaaaaccatagctctta |
35656509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 264
Target Start/End: Complemental strand, 35656605 - 35656572
Alignment:
| Q |
231 |
gttactatgcaaaatacaaattaagtgatattac |
264 |
Q |
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| T |
35656605 |
gttactatgaaaaatacaaattaagtgatattac |
35656572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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