View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0613_low_13 (Length: 333)

Name: NF0613_low_13
Description: NF0613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0613_low_13
NF0613_low_13
[»] chr2 (12 HSPs)
chr2 (30-327)||(43900418-43900715)
chr2 (114-319)||(30906057-30906262)
chr2 (61-238)||(1400727-1400903)
chr2 (115-319)||(45305865-45306068)
chr2 (62-217)||(33667316-33667470)
chr2 (65-227)||(28527280-28527441)
chr2 (134-266)||(7378495-7378625)
chr2 (201-306)||(1400680-1400785)
chr2 (201-266)||(28527269-28527334)
chr2 (207-304)||(41212411-41212507)
chr2 (201-304)||(33667413-33667516)
chr2 (127-181)||(34175155-34175209)
[»] chr7 (27 HSPs)
chr7 (117-320)||(20556663-20556866)
chr7 (103-319)||(31303351-31303567)
chr7 (103-320)||(18312724-18312940)
chr7 (61-277)||(21548393-21548608)
chr7 (61-250)||(21589590-21589779)
chr7 (103-255)||(4290789-4290940)
chr7 (101-267)||(22740652-22740818)
chr7 (114-271)||(5083798-5083954)
chr7 (127-319)||(32964651-32964852)
chr7 (62-277)||(15958267-15958483)
chr7 (114-208)||(28804996-28805089)
chr7 (201-303)||(21589721-21589823)
chr7 (215-320)||(28805130-28805235)
chr7 (203-312)||(31303553-31303661)
chr7 (127-204)||(46943761-46943839)
chr7 (221-306)||(28804893-28804978)
chr7 (169-211)||(2887188-2887230)
chr7 (200-306)||(32964848-32964954)
chr7 (201-266)||(15958259-15958324)
chr7 (201-266)||(21548550-21548615)
chr7 (201-266)||(22033158-22033223)
chr7 (201-277)||(18312924-18313000)
chr7 (117-204)||(27523496-27523583)
chr7 (105-173)||(5174910-5174978)
chr7 (219-320)||(5174792-5174893)
chr7 (201-262)||(20556867-20556928)
chr7 (221-298)||(22032980-22033056)
[»] chr8 (25 HSPs)
chr8 (104-320)||(38606824-38607040)
chr8 (103-320)||(1251472-1251688)
chr8 (129-274)||(29367076-29367221)
chr8 (103-320)||(31273557-31273774)
chr8 (103-274)||(5321957-5322128)
chr8 (101-271)||(5573726-5573895)
chr8 (103-260)||(15714690-15714847)
chr8 (114-249)||(1240907-1241041)
chr8 (118-266)||(26493347-26493492)
chr8 (117-319)||(31596693-31596894)
chr8 (171-320)||(33286114-33286263)
chr8 (229-318)||(24576181-24576270)
chr8 (114-208)||(6809804-6809899)
chr8 (127-204)||(15233241-15233318)
chr8 (142-255)||(32959522-32959635)
chr8 (203-306)||(38606734-38606837)
chr8 (114-163)||(24575913-24575962)
chr8 (220-318)||(28700039-28700136)
chr8 (127-192)||(28700175-28700240)
chr8 (201-250)||(40502387-40502436)
chr8 (201-308)||(15714599-15714706)
chr8 (118-205)||(24537992-24538078)
chr8 (201-255)||(24575864-24575918)
chr8 (114-164)||(26914697-26914747)
chr8 (201-250)||(40502175-40502224)
[»] chr4 (29 HSPs)
chr4 (114-317)||(16583496-16583699)
chr4 (117-320)||(9808971-9809174)
chr4 (129-320)||(9810657-9810848)
chr4 (124-319)||(33179775-33179970)
chr4 (126-277)||(55666844-55666993)
chr4 (114-266)||(35544426-35544577)
chr4 (61-226)||(1966787-1966950)
chr4 (116-319)||(17633349-17633552)
chr4 (104-317)||(19596680-19596895)
chr4 (118-319)||(8740801-8741002)
chr4 (114-267)||(42908519-42908671)
chr4 (117-236)||(2433693-2433811)
chr4 (62-276)||(14351005-14351217)
chr4 (126-224)||(33249634-33249732)
chr4 (127-204)||(24669197-24669274)
chr4 (170-238)||(20874812-20874880)
chr4 (204-306)||(1966741-1966841)
chr4 (200-277)||(24669270-24669347)
chr4 (229-320)||(19746943-19747034)
chr4 (229-320)||(19792772-19792863)
chr4 (231-318)||(25007625-25007711)
chr4 (221-298)||(9810881-9810958)
chr4 (201-306)||(14351160-14351265)
chr4 (221-306)||(19596901-19596986)
chr4 (188-226)||(1966978-1967016)
chr4 (221-298)||(9809194-9809271)
chr4 (221-266)||(17633288-17633333)
chr4 (234-319)||(20871742-20871827)
chr4 (221-277)||(42908685-42908741)
[»] chr3 (42 HSPs)
chr3 (114-281)||(42637962-42638129)
chr3 (103-320)||(3785859-3786076)
chr3 (103-320)||(3823548-3823766)
chr3 (61-250)||(26308593-26308782)
chr3 (114-320)||(44080153-44080359)
chr3 (114-319)||(4169111-4169305)
chr3 (123-320)||(9710739-9710930)
chr3 (118-320)||(1705680-1705880)
chr3 (126-319)||(19280098-19280288)
chr3 (123-260)||(5341833-5341970)
chr3 (116-266)||(19624257-19624406)
chr3 (151-316)||(11509804-11509969)
chr3 (114-227)||(31545606-31545719)
chr3 (127-204)||(27335402-27335479)
chr3 (115-212)||(42481305-42481402)
chr3 (114-320)||(22432234-22432433)
chr3 (114-250)||(27707641-27707776)
chr3 (117-225)||(13358101-13358208)
chr3 (125-281)||(34627316-34627468)
chr3 (149-277)||(23163268-23163397)
chr3 (114-267)||(27079302-27079454)
chr3 (114-267)||(27085099-27085251)
chr3 (127-204)||(27326047-27326124)
chr3 (127-204)||(27332284-27332361)
chr3 (127-204)||(27365008-27365085)
chr3 (201-297)||(31545714-31545810)
chr3 (126-178)||(11501309-11501361)
chr3 (219-277)||(13358992-13359050)
chr3 (126-192)||(39126189-39126254)
chr3 (156-250)||(41571810-41571904)
chr3 (257-320)||(31545423-31545486)
chr3 (204-306)||(19280298-19280400)
chr3 (136-186)||(23163787-23163837)
chr3 (204-266)||(26308586-26308648)
chr3 (204-277)||(1705605-1705678)
chr3 (201-250)||(22432428-22432477)
chr3 (204-320)||(27040683-27040799)
chr3 (103-162)||(11509989-11510048)
chr3 (224-306)||(18733595-18733677)
chr3 (118-164)||(55165098-55165144)
chr3 (127-164)||(18733539-18733576)
chr3 (214-266)||(5341987-5342039)
[»] chr6 (29 HSPs)
chr6 (61-273)||(10304654-10304865)
chr6 (118-317)||(3222332-3222530)
chr6 (117-255)||(33815025-33815163)
chr6 (103-319)||(22608259-22608474)
chr6 (118-316)||(23595055-23595243)
chr6 (62-212)||(138669-138819)
chr6 (62-212)||(146690-146840)
chr6 (62-319)||(3620714-3620970)
chr6 (62-212)||(9068411-9068560)
chr6 (114-205)||(2834974-2835065)
chr6 (179-320)||(11108147-11108288)
chr6 (128-306)||(9474545-9474718)
chr6 (114-164)||(2430613-2430663)
chr6 (201-318)||(7706758-7706876)
chr6 (201-306)||(2835060-2835165)
chr6 (229-304)||(24386337-24386412)
chr6 (201-306)||(2430513-2430618)
chr6 (201-297)||(9068503-9068599)
chr6 (201-255)||(2430650-2430704)
chr6 (114-164)||(7706863-7706913)
chr6 (215-281)||(9068329-9068394)
chr6 (201-250)||(15341858-15341907)
chr6 (201-281)||(138646-138726)
chr6 (201-281)||(146667-146747)
chr6 (229-277)||(10304636-10304684)
chr6 (229-304)||(20084589-20084664)
chr6 (206-308)||(7915696-7915798)
chr6 (221-266)||(30056072-30056117)
chr6 (222-266)||(11108116-11108160)
[»] chr1 (27 HSPs)
chr1 (117-312)||(34490094-34490287)
chr1 (115-319)||(34364131-34364333)
chr1 (114-225)||(29677091-29677202)
chr1 (63-243)||(42604192-42604372)
chr1 (118-255)||(25238439-25238575)
chr1 (61-242)||(29167764-29167943)
chr1 (64-319)||(5831431-5831685)
chr1 (127-262)||(9468064-9468199)
chr1 (114-277)||(38951844-38952010)
chr1 (128-316)||(517433-517623)
chr1 (128-204)||(2996025-2996101)
chr1 (127-319)||(5855005-5855205)
chr1 (201-306)||(13350894-13350999)
chr1 (204-306)||(34490289-34490391)
chr1 (103-164)||(2569961-2570022)
chr1 (166-266)||(9929836-9929935)
chr1 (62-155)||(9929685-9929778)
chr1 (203-250)||(38244801-38244848)
chr1 (204-266)||(5831633-5831695)
chr1 (204-266)||(29167757-29167818)
chr1 (201-266)||(29677032-29677096)
chr1 (200-282)||(5855201-5855283)
chr1 (201-250)||(24708074-24708123)
chr1 (201-266)||(38952005-38952070)
chr1 (201-277)||(2570006-2570082)
chr1 (202-250)||(17227500-17227548)
chr1 (221-297)||(28499644-28499720)
[»] chr5 (23 HSPs)
chr5 (61-318)||(13312498-13312754)
chr5 (115-313)||(22169361-22169559)
chr5 (114-320)||(43461707-43461912)
chr5 (116-318)||(33958988-33959189)
chr5 (114-320)||(31189473-31189680)
chr5 (114-227)||(35922722-35922835)
chr5 (118-255)||(38521978-38522114)
chr5 (69-202)||(42034771-42034904)
chr5 (169-320)||(36169394-36169544)
chr5 (103-266)||(19621468-19621630)
chr5 (130-319)||(43262708-43262911)
chr5 (127-297)||(7156000-7156182)
chr5 (127-204)||(30704398-30704476)
chr5 (201-266)||(15221662-15221727)
chr5 (125-180)||(30045885-30045940)
chr5 (61-163)||(15221618-15221720)
chr5 (221-318)||(35922607-35922704)
chr5 (201-306)||(13312696-13312797)
chr5 (114-169)||(2477302-2477357)
chr5 (201-266)||(35922830-35922895)
chr5 (200-248)||(7156178-7156226)
chr5 (201-306)||(33958887-33958991)
chr5 (229-277)||(15221576-15221624)
[»] scaffold1126 (1 HSPs)
scaffold1126 (61-320)||(162-421)
[»] scaffold0251 (1 HSPs)
scaffold0251 (115-318)||(10622-10825)
[»] scaffold0123 (1 HSPs)
scaffold0123 (118-241)||(24031-24153)
[»] scaffold0126 (1 HSPs)
scaffold0126 (177-320)||(21549-21690)
[»] scaffold0043 (2 HSPs)
scaffold0043 (127-204)||(87035-87112)
scaffold0043 (201-319)||(86873-86991)
[»] scaffold0024 (1 HSPs)
scaffold0024 (127-204)||(112158-112235)
[»] scaffold0291 (1 HSPs)
scaffold0291 (127-204)||(5870-5947)
[»] scaffold0213 (2 HSPs)
scaffold0213 (202-265)||(24932-24995)
scaffold0213 (201-267)||(25350-25416)


Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 30 - 327
Target Start/End: Complemental strand, 43900715 - 43900418
Alignment:
Q  30 gtagacacccttattgtgtacacccctgtaccagttaaccaaatatatggtttgtgtgatcacannnnnnnaattgcgtgatccctatttttccagaatt 129  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||       |||||||||| |||||||||| |||||||    
T  43900715 gtagacacccttattgtgtacacccctgtatcagttaaccaaatatatgatttgtgtgatcacatttttttaattgcgtgacccctattttttcagaatt 43900616  T
Q  130 tatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcatacaactgaaaaaattt 229  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |    
T  43900615 tatttggttaactaaatagaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcacacaactgaaaaaatgt 43900516  T
Q  230 ggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatctttattctctgctcc 327  Q
    | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||| ||||||    
T  43900515 gatcacacagaccatatatttagttacctgaaattttcgagagtggtacaaaatgatctacacattaaaagtgtctatcaatctttattctttgctcc 43900418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 114 - 319
Target Start/End: Original strand, 30906057 - 30906262
Alignment:
Q  114 ctatttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcat 213  Q
    |||| |||||| |||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||     
T  30906057 ctatgtttccataatttatttgcttaactaagtggaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcatttaaatagtggtcac 30906156  T
Q  214 acaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatct 313  Q
      ||||||||||   ||||||| |||||||||||||| |||| ||||||||||  ||||||||| |||| | | |||||||||| ||||| || | ||||    
T  30906157 gaaactgaaaaatggtggtcacgcagaccatatatttggttaactgaaatttttcagagtggtacaaaagggtgtacacattaaaggtgtgtacccatct 30906256  T
Q  314 ttattc 319  Q
    ||||||    
T  30906257 ttattc 30906262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 61 - 238
Target Start/End: Original strand, 1400727 - 1400903
Alignment:
Q  61 cagttaaccaaatatatggtttgtgtgatcacannnnnnnaattgcgtgatccctatttttccagaatttatttggttaactaaatggaaaaatagtggt 160  Q
    |||||||||||||||||||| ||||||| ||||       | |||||||| | ||||||||||| ||||||||||||||||||| ||||||||||||| |    
T  1400727 cagttaaccaaatatatggtatgtgtgaccacattttttaagttgcgtgaccactatttttccataatttatttggttaactaagtggaaaaatagtgat 1400826  T
Q  161 cacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcatacaactgaaaaaatttggtcacaca 238  Q
    |||| ||||||| |||| ||||||||||||||||||||||||||||||||||  |||||| |||||| ||||||||||    
T  1400827 cacgcgcatttttgttgtgtgaccacatttttcagcttctaaatagtggtcacgcaactg-aaaaatgtggtcacaca 1400903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 115 - 319
Target Start/End: Complemental strand, 45306068 - 45305865
Alignment:
Q  115 tatttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcata 214  Q
    |||||||  |||||||||| |||||||||| |||||||||||||||||||  ||||||||||||||| |||||||||||||||| ||||| |||||||      
T  45306068 tatttttttagaatttattcggttaactaagtggaaaaatagtggtcacgcacattttagttgcgtggccacatttttcagcttttaaat-gtggtcacg 45305970  T
Q  215 caactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatctt 314  Q
    ||||||||||||| |||||| |||||| ||||||||  ||| ||||||||||  ||||||||| |||    | |||| |||||||||||  ||| |||||    
T  45305969 caactgaaaaaatatggtcatacagactatatatttgattaactgaaattttttagagtggtacaaaggagtgtacatattaagggtgtaaatctatctt 45305870  T
Q  315 tattc 319  Q
    |||||    
T  45305869 tattc 45305865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 62 - 217
Target Start/End: Complemental strand, 33667470 - 33667316
Alignment:
Q  62 agttaaccaaatatatggtttgtgtgatcacannnnnnnaattgcgtgatccctatttttccagaatttatttggttaactaaatggaaaaatagtggtc 161  Q
    ||||||||||||||||||| ||| ||| ||||       | |||||||| | |||||||| |||||| ||||||||||||||| |||||||||||||||     
T  33667470 agttaaccaaatatatggtatgtatgaacacattttttaagttgcgtgaccactattttttcagaatatatttggttaactaagtggaaaaatagtggtt 33667371  T
Q  162 acgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcatacaa 217  Q
    |||  ||||||| |||||||||||||||||||| ||||||||| ||||||||||||    
T  33667370 acgcacattttaattgcgtgaccacatttttcaacttctaaat-gtggtcatacaa 33667316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 65 - 227
Target Start/End: Original strand, 28527280 - 28527441
Alignment:
Q  65 taaccaaatatatggtttgtgtgatcacannnnnnnaattgcgtgatccctatttttccagaatttatttggttaactaaatggaaaaatagtggtcacg 164  Q
    |||||||||||||||| ||||||| ||||       | |||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||     
T  28527280 taaccaaatatatggtctgtgtgaccacatttttttagttgcgtgaccactatttttccagaatttatttggttaactaattggaaaaatagtggtcaca 28527379  T
Q  165 tgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcatacaactgaaaaaat 227  Q
     |||| |||||| |||||| ||||||| ||||||||||||  ||||||  ||||| |||||||    
T  28527380 cgcatgttagtt-cgtgacaacattttccagcttctaaattatggtcacgcaactaaaaaaat 28527441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 134 - 266
Target Start/End: Original strand, 7378495 - 7378625
Alignment:
Q  134 tggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcatacaactgaaaaaatttggtc 233  Q
    ||||||| ||| ||||| ||||||||||||   |||||||||||||| |||| |||||| ||||||||||| ||||| |  ||||||||||||| |||||    
T  7378495 tggttaattaagtggaataatagtggtcacacacattttagttgcgtcaccatattttt-agcttctaaat-gtggttacgcaactgaaaaaatatggtc 7378592  T
Q  234 acacagaccatatatttagttacctgaaatttt 266  Q
    ||||| ||||||||||| |||| ||||||||||    
T  7378593 acacaaaccatatattttgttaactgaaatttt 7378625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 201 - 306
Target Start/End: Complemental strand, 1400785 - 1400680
Alignment:
Q  201 aaatagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaaggg 300  Q
    ||||||||||||  ||||| ||||||| |||||||||| ||||||||||| |||| ||||||||||  ||| ||||| |||| | | |||||||||||||    
T  1400785 aaatagtggtcacgcaacttaaaaaatgtggtcacacataccatatatttggttaactgaaatttttcagattggtacaaaagggtgtacacattaaggg 1400686  T
Q  301 tgtcta 306  Q
    ||||||    
T  1400685 tgtcta 1400680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 201 - 266
Target Start/End: Complemental strand, 28527334 - 28527269
Alignment:
Q  201 aaatagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaatttt 266  Q
    ||||||||||||  ||||| ||||||| |||||||||||||||||||||| |||| ||||||||||    
T  28527334 aaatagtggtcacgcaactaaaaaaatgtggtcacacagaccatatatttggttagctgaaatttt 28527269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 304
Target Start/End: Original strand, 41212411 - 41212507
Alignment:
Q  207 tggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtc 304  Q
    |||||| |||||| ||||||| |||||||||||||||||||||| |||| || |||||||  ||||||||| |||  | | |||| ||||||||||||    
T  41212411 tggtcacacaact-aaaaaatgtggtcacacagaccatatatttggttaacttaaatttttcagagtggtacaaaggggtatacatattaagggtgtc 41212507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 201 - 304
Target Start/End: Original strand, 33667413 - 33667516
Alignment:
Q  201 aaatagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaaggg 300  Q
    ||||||||||||  ||||| ||||||| || ||| ||| ||||||||||| |||| || |||||||  ||||||||| ||||   | |||| ||||||||    
T  33667413 aaatagtggtcacgcaacttaaaaaatgtgttcatacataccatatatttggttaactaaaatttttcagagtggtacaaaagagtgtacatattaaggg 33667512  T
Q  301 tgtc 304  Q
    ||||    
T  33667513 tgtc 33667516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 34175209 - 34175155
Alignment:
Q  127 atttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtg 181  Q
    |||||||||||||||||| |||||||||||  |||||   |||||||||||||||    
T  34175209 atttatttggttaactaagtggaaaaatagcagtcacacacattttagttgcgtg 34175155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 128; Significance: 4e-66; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 117 - 320
Target Start/End: Complemental strand, 20556866 - 20556663
Alignment:
Q  117 tttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcataca 216  Q
    ||||| |||||||||||||||||||||| |||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||    
T  20556866 ttttttcagaatttatttggttaactaagtggaaaaatattggtcacgcgtattttagttgcgtgaccacatttttcagcttctaaatagtggtcacaca 20556767  T
Q  217 actgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatcttta 316  Q
    ||||||||||| ||||||||| |||||||||||| |||| |||||||||||||||||   | |||  ||| ||||||||||||||||||| | |||||||    
T  20556766 actgaaaaaatatggtcacaccgaccatatatttggttaactgaaattttcgagagtaacacaaagagatatacacattaagggtgtctaccgatcttta 20556667  T
Q  317 ttct 320  Q
    ||||    
T  20556666 ttct 20556663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 103 - 319
Target Start/End: Complemental strand, 31303567 - 31303351
Alignment:
Q  103 ttgcgtgatccctatttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaa 202  Q
    |||||||| | |||| |||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||| |||||||||||||||||||||||    
T  31303567 ttgcgtgaccactatgtttccagaatttatttggttaactaagtggaaaaatagtggtcacgcacattttagttgcatgaccacatttttcagcttctaa 31303468  T
Q  203 atagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtg 302  Q
    ||||||||||  ||| ||||||||| ||||||| |||||||| ||||| |||  ||||||||||  |||||| || |||  ||| |||||||||||||||    
T  31303467 atagtggtcacgcaattgaaaaaatgtggtcacgcagaccatgtatttggttgactgaaatttttcagagtgatacaaatggatgtacacattaagggtg 31303368  T
Q  303 tctatcaatctttattc 319  Q
    |||| ||||||||||||    
T  31303367 tctaccaatctttattc 31303351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 103 - 320
Target Start/End: Complemental strand, 18312940 - 18312724
Alignment:
Q  103 ttgcgtgatccctatttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaa 202  Q
    |||||||| | ||||||||| |||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||    
T  18312940 ttgcgtgaccactatttttcaagaatttattaggttaactaagtggaaaaatagtggtcacatgcattttagttgcgtgagcaca-ttttcagcttctaa 18312842  T
Q  203 atagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtg 302  Q
    ||||| || |  |||||||||| || |||||||| |||||||||||||  |||  |||||||||||||||||||| |||  | | ||||| |||||||||    
T  18312841 atagtagtgacgcaactgaaaatatgtggtcacagagaccatatatttgattaattgaaattttcgagagtggtacaaaggggtatacacgttaagggtg 18312742  T
Q  303 tctatcaatctttattct 320  Q
    |||| |||||||||||||    
T  18312741 tctaccaatctttattct 18312724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 61 - 277
Target Start/End: Complemental strand, 21548608 - 21548393
Alignment:
Q  61 cagttaaccaaatatatggtttgtgtgatcacannnnnnnaattgcgtgatccctatttttccagaatttatttggttaactaaatggaaaaatagtggt 160  Q
    |||||||| ||||||||||| |||||||||| |       | |||||||| | ||||||||||||||||||||||||||||||| |||||||| ||||||    
T  21548608 cagttaactaaatatatggtctgtgtgatcatatttgtttagttgcgtgaccactatttttccagaatttatttggttaactaagtggaaaaacagtggt 21548509  T
Q  161 cacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctga 260  Q
     ||| |||||  |||||||||||||||||||||||||| |||||| |||||| |||||||||||||| |||||||||| ||||||| |||  ||| ||||    
T  21548508 tacgcgcattcgagttgcgtgaccacatttttcagcttttaaatattggtcacacaactgaaaaaatatggtcacacataccatat-tttgattaactga 21548410  T
Q  261 aattttcgagagtggta 277  Q
    ||||||| |||||||||    
T  21548409 aattttcaagagtggta 21548393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 61 - 250
Target Start/End: Complemental strand, 21589779 - 21589590
Alignment:
Q  61 cagttaaccaaatatatggtttgtgtgatcacannnnnnnaattgcgtgatccctatttttccagaatttatttggttaactaaatggaaaaatagtggt 160  Q
    |||||| ||||||||||||| ||||||| ||||       | |||| ||| | |||||||||||||| ||||||| |||| ||| |||||||||||||||    
T  21589779 cagttatccaaatatatggtctgtgtgaccacatttttttagttgcatgaccactatttttccagaacttatttgattaattaagtggaaaaatagtggt 21589680  T
Q  161 cacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcatacaactgaaaaaatttggtcacacagaccatatattt 250  Q
    |||  ||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| |||| ||||||||    
T  21589679 cacacgcattttagttgcatgaccacatttttcagcttctaaatagtgatcacacaactgaaaaaatatggtcacatagacaatatattt 21589590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 103 - 255
Target Start/End: Complemental strand, 4290940 - 4290789
Alignment:
Q  103 ttgcgtgatccctatttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaa 202  Q
    |||||||| | ||| |||| |||||||||||||||||||||| |||||||||||||||||||  || || |||||||||||||||||||||| |||||||    
T  4290940 ttgcgtgaccactagtttttcagaatttatttggttaactaagtggaaaaatagtggtcacgcacactt-agttgcgtgaccacatttttcaacttctaa 4290842  T
Q  203 atagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagtta 255  Q
    ||||||||||  ||||||||||||| |||||| | | ||||||||| ||||||    
T  4290841 atagtggtcactcaactgaaaaaatgtggtcagataaaccatatatctagtta 4290789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 101 - 267
Target Start/End: Original strand, 22740652 - 22740818
Alignment:
Q  101 aattgcgtgatccctatttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttct 200  Q
    ||||||||||   |||||||| |||||||||||||||||||||| |||||||||| || |||||   |||||||||||||||||| |||||||||||| |    
T  22740652 aattgcgtgactactattttttcagaatttatttggttaactaagtggaaaaataatgatcacgcatattttagttgcgtgaccatatttttcagctttt 22740751  T
Q  201 aaatagtggtcatacaactg-aaaaaatttggtcacacagaccatatatttagttacctgaaattttc 267  Q
    ||||| |||||| ||||||| ||||||| |||| ||||| || |||||||||||||  ||||||||||    
T  22740752 aaata-tggtcacacaactgaaaaaaatgtggttacacaaactatatatttagttaattgaaattttc 22740818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 114 - 271
Target Start/End: Original strand, 5083798 - 5083954
Alignment:
Q  114 ctatttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcat 213  Q
    ||||||||| ||||||||||| |||||| || | ||||||||||||||||  |||||| ||||||||||||| |||||||| |||||||||||||||||     
T  5083798 ctatttttctagaatttatttcgttaacaaagttgaaaaatagtggtcacccgcattt-agttgcgtgaccatatttttcaacttctaaatagtggtcac 5083896  T
Q  214 acaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgaga 271  Q
     ||| ||||||||| |||||||||| |||||||||||  | |  ||||||||||||||    
T  5083897 gcaattgaaaaaatgtggtcacacataccatatatttgatgaattgaaattttcgaga 5083954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 127 - 319
Target Start/End: Complemental strand, 32964852 - 32964651
Alignment:
Q  127 atttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttct----------aaatagtggtcataca 216  Q
    ||||||| |||||| ||| ||||||||||||||||||||||||||||||| | |||||| ||||||||||||||          |||||||||||| |||    
T  32964852 atttattaggttaattaagtggaaaaatagtggtcacgtgcattttagttacatgaccatatttttcagcttctaaatgctggaaaatagtggtcacaca 32964753  T
Q  217 actgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatcttta 316  Q
    | || |||||| |||||||||| |||||||||||||||| || ||||| |  |||||||| ||||   || |||||||||||| |||||| |||||||||    
T  32964752 attg-aaaaatatggtcacacataccatatatttagttaacttaaattctttagagtggtgtaaatgaatgtacacattaaggatgtctaccaatcttta 32964654  T
Q  317 ttc 319  Q
    |||    
T  32964653 ttc 32964651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 62 - 277
Target Start/End: Original strand, 15958267 - 15958483
Alignment:
Q  62 agttaaccaaatatatggtttgtgtgatcacannnnnnnaattgcgtgatccctatttttccagaatttatttggttaactaaatggaaaaata----gt 157  Q
    |||||||||||||||||||  |||||| ||||       | ||| |||| | |||||||| |||||||||||||||||| ||| |  ||||| |    ||    
T  15958267 agttaaccaaatatatggtcagtgtgaccacatttttttagttgtgtgaccactattttttcagaatttatttggttaaataagtaaaaaaaaaaattgt 15958366  T
Q  158 ggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacc 257  Q
    | |||||  ||||| | |||||||||||||||||||||||||||||||||| |||| ||||| ||||| | ||||||||||||||||||||||||||| |    
T  15958367 gatcacgcacatttaa-ttgcgtgaccacatttttcagcttctaaatagtg-tcatgcaacttaaaaa-tgtggtcacacagaccatatatttagttaac 15958463  T
Q  258 tgaaattttcgagagtggta 277  Q
    |||||||||  |||||||||    
T  15958464 tgaaattttacagagtggta 15958483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 114 - 208
Target Start/End: Original strand, 28804996 - 28805089
Alignment:
Q  114 ctatttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtg 208  Q
    |||| |||||| ||||||||||||||||||| |||||||||||||||| || ||||||| |||| ||||||||||||||||||||||||||||||    
T  28804996 ctatatttccataatttatttggttaactaagtggaaaaatagtggtc-cgcgcattttggttgtgtgaccacatttttcagcttctaaatagtg 28805089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 201 - 303
Target Start/End: Original strand, 21589721 - 21589823
Alignment:
Q  201 aaatagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaaggg 300  Q
    ||||||||||||| ||||| ||||||| |||||||||||||||||||||| | || ||||||||||  |||||||||||||  ||| |||||||||||||    
T  21589721 aaatagtggtcatgcaactaaaaaaatgtggtcacacagaccatatatttggataactgaaattttttagagtggtataaacggatgtacacattaaggg 21589820  T
Q  301 tgt 303  Q
    |||    
T  21589821 tgt 21589823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 215 - 320
Target Start/End: Original strand, 28805130 - 28805235
Alignment:
Q  215 caactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatctt 314  Q
    ||||||||||||| |||||||||| ||||||||||| |||| || |||||||  |||||| || |||  | | ||||||||||||||||||| |||||||    
T  28805130 caactgaaaaaatgtggtcacacataccatatatttggttaacttaaatttttcagagtgatacaaaggggtatacacattaagggtgtctaccaatctt 28805229  T
Q  315 tattct 320  Q
    ||||||    
T  28805230 tattct 28805235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 203 - 312
Target Start/End: Original strand, 31303553 - 31303661
Alignment:
Q  203 atagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtg 302  Q
    ||||||||||  ||||| ||||||| |||||||||| ||||||||||| |||| ||||||||||   ||||||||||||| ||| || ||||||| ||||    
T  31303553 atagtggtcacgcaact-aaaaaatgtggtcacacataccatatattttgttaactgaaatttttttgagtggtataaaaggatgtagacattaaaggtg 31303651  T
Q  303 tctatcaatc 312  Q
    |||| |||||    
T  31303652 tctaccaatc 31303661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 204
Target Start/End: Original strand, 46943761 - 46943839
Alignment:
Q  127 atttatttggttaactaaatggaaaa--atagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaat 204  Q
    |||||||||||||||||| || ||||  |||||||||||| ||||||||||||||||| |||| ||||||||||||||||    
T  46943761 atttatttggttaactaagtgaaaaaaaatagtggtcacgcgcattttagttgcgtgatcaca-ttttcagcttctaaat 46943839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 221 - 306
Target Start/End: Complemental strand, 28804978 - 28804893
Alignment:
Q  221 aaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtcta 306  Q
    ||||||| |||||||| ||||||||||||| |||| ||||||||||| ||| ||||| |||| | | |||| ||||||||||||||    
T  28804978 aaaaaatgtggtcacatagaccatatatttggttaactgaaattttctagaatggtacaaaagggtgtacatattaagggtgtcta 28804893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 169 - 211
Target Start/End: Original strand, 2887188 - 2887230
Alignment:
Q  169 ttttagttgcgtgaccacatttttcagcttctaaatagtggtc 211  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  2887188 ttttagttgcgtaaccacatttttcagcttctaaatagtggtc 2887230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 200 - 306
Target Start/End: Original strand, 32964848 - 32964954
Alignment:
Q  200 taaatagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagg 299  Q
    |||||||||||||  ||||| |||| || |||||||||||||||||||| |||||| || |||||||  |||||| || |||| | | || ||||||| |    
T  32964848 taaatagtggtcacgcaactaaaaatatgtggtcacacagaccatatatatagttaacttaaattttttagagtgatacaaaagggtgtatacattaaag 32964947  T
Q  300 gtgtcta 306  Q
    |||||||    
T  32964948 gtgtcta 32964954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 266
Target Start/End: Complemental strand, 15958324 - 15958259
Alignment:
Q  201 aaatagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaatttt 266  Q
    |||||||||||| |||||| ||||||| ||||||||| |||||||||||| |||| || |||||||    
T  15958324 aaatagtggtcacacaactaaaaaaatgtggtcacactgaccatatatttggttaacttaaatttt 15958259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 266
Target Start/End: Original strand, 21548550 - 21548615
Alignment:
Q  201 aaatagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaatttt 266  Q
    ||||||||||||  ||||| || |||| || |||||||||||||||||||||||| ||||||||||    
T  21548550 aaatagtggtcacgcaactaaacaaatatgatcacacagaccatatatttagttaactgaaatttt 21548615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 266
Target Start/End: Original strand, 22033158 - 22033223
Alignment:
Q  201 aaatagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaatttt 266  Q
    ||||||||||||  ||||| ||||||| |||||||||||||||||||||| |||| || |||||||    
T  22033158 aaatagtggtcacgcaactcaaaaaatatggtcacacagaccatatatttggttaactaaaatttt 22033223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 201 - 277
Target Start/End: Original strand, 18312924 - 18313000
Alignment:
Q  201 aaatagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggta 277  Q
    ||||||||||||  ||||| ||||||||| | |||||| ||||||||||| |||| ||||||||||  |||||||||    
T  18312924 aaatagtggtcacgcaactaaaaaaatttagccacacaaaccatatatttggttagctgaaatttttcagagtggta 18313000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 204
Target Start/End: Original strand, 27523496 - 27523583
Alignment:
Q  117 tttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaat 204  Q
    ||||| |||||||||||||||||| ||| |||||||||||| |||| |  ||||||| |||  ||||||  |||||||| ||||||||    
T  27523496 ttttttcagaatttatttggttaattaagtggaaaaatagtagtcaagcacattttaattgtatgaccatgtttttcagtttctaaat 27523583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 173
Target Start/End: Complemental strand, 5174978 - 5174910
Alignment:
Q  105 gcgtgatccctatttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcatttta 173  Q
    |||||| | ||| |||| ||||||||||||| |||||||| || ||||||||||||||||  |||||||    
T  5174978 gcgtgaccactaatttttcagaatttatttgattaactaagtgtaaaaatagtggtcacgcacatttta 5174910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 320
Target Start/End: Complemental strand, 5174893 - 5174792
Alignment:
Q  219 tgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatctttatt 318  Q
    ||||||||| || | ||||| ||||||||| |  ||| |||||||||||||| |||||| |||  ||| |||||||||||  ||| |||  |||||||||    
T  5174893 tgaaaaaatgtgattacacaaaccatatatatgattaactgaaattttcgagcgtggtacaaagagatgtacacattaagaatgtttattgatctttatt 5174794  T
Q  319 ct 320  Q
    ||    
T  5174793 ct 5174792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 262
Target Start/End: Original strand, 20556867 - 20556928
Alignment:
Q  201 aaatagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaa 262  Q
    ||||||||||||  ||||  ||||||| |||||| |||||| ||||||||||||| ||||||    
T  20556867 aaatagtggtcactcaaccaaaaaaatgtggtcaaacagactatatatttagttaactgaaa 20556928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 298
Target Start/End: Complemental strand, 22033056 - 22032980
Alignment:
Q  221 aaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaag 298  Q
    ||||||| |||||||||| ||||||||||| |||| || |||||||  |||||||||  ||| ||| |||||||||||    
T  22033056 aaaaaatgtggtcacacataccatatatttggttaacttaaattttaaagagtggta-caaaggatgtacacattaag 22032980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 104 - 320
Target Start/End: Original strand, 38606824 - 38607040
Alignment:
Q  104 tgcgtgatccctatttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaa 203  Q
    ||||||| | |||| |||||||||||||||||||||||||| ||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||    
T  38606824 tgcgtgaccactatgtttccagaatttatttggttaactaagtggaaaaatagtggtcacacgcattttcgttgcgtgaccacatttttcagcttctaaa 38606923  T
Q  204 tagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgt 303  Q
    ||||||| |  ||||||||||||| ||||||| || ||||||||| |||||| |||||||||| |||||| ||| |||  | | |||||||||||| |||    
T  38606924 tagtggtaacgcaactgaaaaaatgtggtcacgcaaaccatatatgtagttaactgaaattttggagagttgtacaaaggggtgtacacattaaggatgt 38607023  T
Q  304 ctatcaatctttattct 320  Q
    ||| |||| ||||||||    
T  38607024 ctaccaatatttattct 38607040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 103 - 320
Target Start/End: Original strand, 1251472 - 1251688
Alignment:
Q  103 ttgcgtgatccctatttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaa 202  Q
    |||||||| | ||||||||||| ||||||||||||||||||| ||| |||||||||||| ||  |||||||||| | ||| |||||||||||| || |||    
T  1251472 ttgcgtgaccactatttttccataatttatttggttaactaagtgggaaaatagtggtcgcgcacattttagtt-catgatcacatttttcaggttttaa 1251570  T
Q  203 atagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtg 302  Q
    ||||||||||  ||||||||||||| ||||| |||| | |||||||||||||| ||||||||||||||||||||| |||  | | |||||||||||| ||    
T  1251571 atagtggtcacgcaactgaaaaaatgtggtctcacaaatcatatatttagttaactgaaattttcgagagtggtacaaatgggtgtacacattaaggatg 1251670  T
Q  303 tctatcaatctttattct 320  Q
    |||| |||||||||||||    
T  1251671 tctaccaatctttattct 1251688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 129 - 274
Target Start/End: Original strand, 29367076 - 29367221
Alignment:
Q  129 ttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcatacaactgaaaaaatt 228  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||     
T  29367076 ttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttcaaaatagtggtcacacaattgaaaaaata 29367175  T
Q  229 tggtcacacagaccatatatttagttacctgaaattttcgagagtg 274  Q
    |||| ||| ||||||||||||||||||  | |||||||| ||||||    
T  29367176 tggttacatagaccatatatttagttaattaaaattttcaagagtg 29367221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 103 - 320
Target Start/End: Original strand, 31273557 - 31273774
Alignment:
Q  103 ttgcgtgatccctatttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaa 202  Q
    |||||||||| | ||||||  ||||||||||||||||||| | || |||||||| | ||||||||||||||| ||| |||||| ||||||||||||||||    
T  31273557 ttgcgtgatcaccattttttaagaatttatttggttaacttagtgaaaaaatagcgttcacgtgcattttagctgcatgaccatatttttcagcttctaa 31273656  T
Q  203 atagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtg 302  Q
    |||| |||||  |||||||||| || ||| |||| |||||||||||||  |||  |||||||||||||||||||| |||| | | ||||||||||| ||     
T  31273657 ataggggtcacgcaactgaaaacatgtggccacatagaccatatatttgattaattgaaattttcgagagtggtacaaaaaggtatacacattaagagta 31273756  T
Q  303 tctatcaatctttattct 320  Q
    |||| |||||||||||||    
T  31273757 tctaccaatctttattct 31273774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 103 - 274
Target Start/End: Original strand, 5321957 - 5322128
Alignment:
Q  103 ttgcgtgatccctatttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaa 202  Q
    |||||||| | ||||||||  ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||    
T  5321957 ttgcgtgaccactatttttttagaatttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgcgtgatcatatttttcagcttctaa 5322056  T
Q  203 atagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtg 274  Q
    ||| || |||  ||| ||||||||| || ||||||||||||||||||| ||||  ||||||||| |||||||    
T  5322057 ataatgatcacgcaattgaaaaaatgtgatcacacagaccatatatttggttaattgaaatttttgagagtg 5322128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 101 - 271
Target Start/End: Complemental strand, 5573895 - 5573726
Alignment:
Q  101 aattgcgtgatccctatttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttct 200  Q
    |||||||||| | ||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||| |||||    
T  5573895 aattgcgtgaccactatttttcaa-aatttatttggttaactaagtggaaaaatagtggtcacgtgcattttagttccatgaccacatttttcaacttct 5573797  T
Q  201 aaatagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgaga 271  Q
    ||||||||||||  ||| ||||||||| | |||||| | | ||||||||| |||| ||||||| |||||||    
T  5573796 aaatagtggtcacgcaattgaaaaaatgtagtcacatatatcatatatttggttaactgaaatgttcgaga 5573726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 103 - 260
Target Start/End: Original strand, 15714690 - 15714847
Alignment:
Q  103 ttgcgtgatccctatttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaa 202  Q
    |||||||| | |||||||| |  ||||||||||||||||||| |||||||||||||||||||  |||||||||| |||||||| |||||||||||| |||    
T  15714690 ttgcgtgaccactattttttcgaaatttatttggttaactaagtggaaaaatagtggtcacggacattttagttacgtgaccatatttttcagcttttaa 15714789  T
Q  203 atagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctga 260  Q
    ||||| |||| ||| |||||||||| |||| |||||||||||||||||||||| ||||    
T  15714790 atagtagtcacacagctgaaaaaatgtggttacacagaccatatatttagttaactga 15714847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 114 - 249
Target Start/End: Original strand, 1240907 - 1241041
Alignment:
Q  114 ctatttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcat 213  Q
    ||||||||||| ||||||||||||||||||| ||| |||||||||||||||  |||||||||| | |||||||||||||||||||||||||||||||||     
T  1240907 ctatttttccataatttatttggttaactaagtgggaaaatagtggtcacgcacattttagtt-catgaccacatttttcagcttctaaatagtggtcac 1241005  T
Q  214 acaactgaaaaaatttggtcacacagaccatatatt 249  Q
    |||||||||||||| ||||| |||| ||||||||||    
T  1241006 acaactgaaaaaatatggtctcacacaccatatatt 1241041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 118 - 266
Target Start/End: Original strand, 26493347 - 26493492
Alignment:
Q  118 ttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcatacaa 217  Q
    |||| ||||||||||||| ||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||| || | ||||    
T  26493347 tttttcagaatttatttgattaactaaatggaaaaatagttgtcacgcgcattt-agttgcgtgaccacatttttcagcttctaaatagtagttacacaa 26493445  T
Q  218 ctgaaaaaatttggtcacacagaccatatatttagttacctgaaatttt 266  Q
    |||||||||| || ||||||| |  |||||||| ||||  |||||||||    
T  26493446 ctgaaaaaatgtgatcacacaaa--atatatttggttaattgaaatttt 26493492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 117 - 319
Target Start/End: Complemental strand, 31596894 - 31596693
Alignment:
Q  117 tttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcataca 216  Q
    |||||||| ||||||||||||||| ||| ||||||||||||| | ||  |||||| |||||  ||||||||||||||| ||||||||||||||| |  ||    
T  31596894 tttttccataatttatttggttaattaagtggaaaaatagtgattacacgcattt-agttgtctgaccacatttttcatcttctaaatagtggtaacgca 31596796  T
Q  217 actgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatcttta 316  Q
    ||||||||||| |||||||||| |||||||||||  ||| ||| ||||||  | ||||||| |||  | | |||| |||||| ||||||| |||||||||    
T  31596795 actgaaaaaatgtggtcacacataccatatatttgattaactgtaatttttcaaagtggtacaaagaggtgtacatattaagagtgtctaccaatcttta 31596696  T
Q  317 ttc 319  Q
    |||    
T  31596695 ttc 31596693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 171 - 320
Target Start/End: Complemental strand, 33286263 - 33286114
Alignment:
Q  171 ttagttgcgtgaccacatttttcagcttctaaatagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgag 270  Q
    ||||||||||||||||||||||||||||||||| ||||||||  ||| ||||||||| ||||||| |||||||||||||| ||||  | || ||||  ||    
T  33286263 ttagttgcgtgaccacatttttcagcttctaaaaagtggtcacgcaattgaaaaaatgtggtcacgcagaccatatatttggttaattaaatttttttag 33286164  T
Q  271 agtggtataaaatgatctacacattaagggtgtctatcaatctttattct 320  Q
    || |||| |||  | | ||||||||||||||||| | |||||||||||||    
T  33286163 aggggtacaaatgggtgtacacattaagggtgtccaccaatctttattct 33286114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 229 - 318
Target Start/End: Original strand, 24576181 - 24576270
Alignment:
Q  229 tggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatctttatt 318  Q
    |||||||||||||||||||||| ||||  |||||||||||||||||||| |||  | | ||||||||| ||||||||| |||||||||||    
T  24576181 tggtcacacagaccatatatttggttaattgaaattttcgagagtggtacaaaggggtgtacacattacgggtgtctaccaatctttatt 24576270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 114 - 208
Target Start/End: Complemental strand, 6809899 - 6809804
Alignment:
Q  114 ctatttttc-cagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtg 208  Q
    ||||||||| || ||||||||||||||| |||||||||||||||||||||| || |||||||| | || ||||||||||| | ||| |||||||||    
T  6809899 ctatttttctcataatttatttggttaattaaatggaaaaatagtggtcacatgtattttagtcgagtaaccacattttttatcttttaaatagtg 6809804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 127 - 204
Target Start/End: Complemental strand, 15233318 - 15233241
Alignment:
Q  127 atttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaat 204  Q
    |||||||||||||| ||| || |||||||||||||| | ||||||||||||||||||||| ||||||| ||| |||||    
T  15233318 atttatttggttaattaagtgaaaaaatagtggtcatgcgcattttagttgcgtgaccacgtttttcaacttttaaat 15233241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 142 - 255
Target Start/End: Complemental strand, 32959635 - 32959522
Alignment:
Q  142 taaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcatacaactgaaaaaatttggtcacacagac 241  Q
    ||||||||||||||||||||||   ||||||||||| ||||||| |||||| ||||||| ||| |||||||   || ||||||||| || ||||||| |     
T  32959635 taaatggaaaaatagtggtcacacacattttagttgtgtgaccatattttttagcttcttaatggtggtcacgtaattgaaaaaatgtgatcacacaaat 32959536  T
Q  242 catatatttagtta 255  Q
    ||| ||||| ||||    
T  32959535 catgtatttggtta 32959522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 306
Target Start/End: Complemental strand, 38606837 - 38606734
Alignment:
Q  203 atagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtg 302  Q
    ||||||||||  || || ||||||| |||||||||| |||||||||||||||| ||||||||||  ||||||||| |||  | |||| | ||||||| ||    
T  38606837 atagtggtcacgcagctaaaaaaatatggtcacacataccatatatttagttaactgaaatttttcagagtggtacaaaggggtctaaagattaaggatg 38606738  T
Q  303 tcta 306  Q
    ||||    
T  38606737 tcta 38606734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 163
Target Start/End: Original strand, 24575913 - 24575962
Alignment:
Q  114 ctatttttccagaatttatttggttaactaaatggaaaaatagtggtcac 163  Q
    ||||||||||||||||||||||||||| ||| || |||||||||||||||    
T  24575913 ctatttttccagaatttatttggttaaataagtgaaaaaatagtggtcac 24575962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 318
Target Start/End: Complemental strand, 28700136 - 28700039
Alignment:
Q  220 gaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatctttatt 318  Q
    |||||||| |||||||| | |||||||||||||||| ||||||||||  ||| || || |||||||| |||||||||| | |||| | | |||||||||    
T  28700136 gaaaaaatatggtcacata-accatatatttagttaactgaaattttttagaatgatacaaaatgatgtacacattaaagatgtcaacctatctttatt 28700039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 127 - 192
Target Start/End: Complemental strand, 28700240 - 28700175
Alignment:
Q  127 atttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacattttt 192  Q
    |||||||||||||||||| | |||||||| ||||||| ||||||||| ||| |||| | |||||||    
T  28700240 atttatttggttaactaagtagaaaaataatggtcacttgcattttaattgtgtgatcgcattttt 28700175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 201 - 250
Target Start/End: Original strand, 40502387 - 40502436
Alignment:
Q  201 aaatagtggtcatacaactgaaaaaatttggtcacacagaccatatattt 250  Q
    |||||||||||| ||| || ||||||| ||||||||||||||||||||||    
T  40502387 aaatagtggtcacacaccttaaaaaatgtggtcacacagaccatatattt 40502436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 201 - 308
Target Start/End: Complemental strand, 15714706 - 15714599
Alignment:
Q  201 aaatagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaaggg 300  Q
    ||||||||||||  ||||| | ||||| |||||||| | | ||||||||||| || ||||||||||  ||||||||| ||||   | |||| ||||| ||    
T  15714706 aaatagtggtcacgcaactaacaaaatgtggtcacataaatcatatatttagctaactgaaatttttcagagtggtacaaaaatgtgtacatattaaagg 15714607  T
Q  301 tgtctatc 308  Q
    ||||||||    
T  15714606 tgtctatc 15714599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 205
Target Start/End: Original strand, 24537992 - 24538078
Alignment:
Q  118 ttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaata 205  Q
    ||||||| |||||||||||||||| | |||||||||||||||| ||  || ||  |||| | |||||| |||||| ||||||||||||    
T  24537992 ttttccaaaatttatttggttaaccatatggaaaaatagtggtaacacgcgttgcagttacatgaccatattttt-agcttctaaata 24538078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 255
Target Start/End: Complemental strand, 24575918 - 24575864
Alignment:
Q  201 aaatagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagtta 255  Q
    |||||||||||| |||||| ||| ||| ||||| |||||||||||||||| ||||    
T  24575918 aaatagtggtcagacaactaaaataatatggtcgcacagaccatatatttggtta 24575864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 164
Target Start/End: Original strand, 26914697 - 26914747
Alignment:
Q  114 ctatttttccagaatttatttggttaactaaatggaaaaatagtggtcacg 164  Q
    ||||||||| ||||||||||||||||| | | |||||||||| ||||||||    
T  26914697 ctatttttcaagaatttatttggttaattgagtggaaaaataatggtcacg 26914747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 250
Target Start/End: Original strand, 40502175 - 40502224
Alignment:
Q  201 aaatagtggtcatacaactgaaaaaatttggtcacacagaccatatattt 250  Q
    ||||||||||||  || || ||||||| ||||||||||||||||||||||    
T  40502175 aaatagtggtcacgcaccttaaaaaatgtggtcacacagaccatatattt 40502224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 6e-59; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 114 - 317
Target Start/End: Complemental strand, 16583699 - 16583496
Alignment:
Q  114 ctatttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcat 213  Q
    ||||||| ||| ||||||||||||||| ||| ||||||||||||||||||| ||||||||||||| ||| || ||||||||||||||||||||||||||     
T  16583699 ctattttaccataatttatttggttaattaagtggaaaaatagtggtcacgcgcattttagttgcatgatcatatttttcagcttctaaatagtggtcac 16583600  T
Q  214 acaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatct 313  Q
     ||||||||||||| ||||||||   ||||||||||| |||| ||||||||||||||||||||| |||  ||| ||| ||||||||||||||| ||||||    
T  16583599 gcaactgaaaaaatgtggtcacatcaaccatatatttggttaactgaaattttcgagagtggtacaaagggatgtacgcattaagggtgtctaccaatct 16583500  T
Q  314 ttat 317  Q
    ||||    
T  16583499 ttat 16583496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 117 - 320
Target Start/End: Complemental strand, 9809174 - 9808971
Alignment:
Q  117 tttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcataca 216  Q
    |||||||| || |||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||  ||    
T  9809174 tttttccataaattatttggttaactaaatggaaaaatagtggtcacgcgcatttgagttgcgtgactacatttttcagcttctaaatagtggtcacgca 9809075  T
Q  217 actgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatcttta 316  Q
    ||||||||||| ||||||| ||||||||||||||||||| ||||| ||||  | || |||| |||| | | |||| |||||||||||| | | |||||||    
T  9809074 actgaaaaaatgtggtcacgcagaccatatatttagttaactgaattttttcatagcggtacaaaagggtgtacatattaagggtgtcaacctatcttta 9808975  T
Q  317 ttct 320  Q
    ||||    
T  9808974 ttct 9808971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 129 - 320
Target Start/End: Complemental strand, 9810848 - 9810657
Alignment:
Q  129 ttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcatacaactgaaaaaatt 228  Q
    |||||||||||||||||||||||||||| |||||||  ||||| ||||||||||| |||||||| |||||||||||||||||||  |||||||||||||     
T  9810848 ttatttggttaactaaatggaaaaatagaggtcacgcacatttgagttgcgtgactacattttttagcttctaaatagtggtcacgcaactgaaaaaatg 9810749  T
Q  229 tggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatctttattct 320  Q
    |||| || || |||||||||||| ||| ||||||||||  | ||||||| |||| | | |||| |||||||||||| | | |||||||||||    
T  9810748 tggtaacgcaaaccatatatttaattaactgaaatttttcatagtggtacaaaagggtgtacatattaagggtgtcaacctatctttattct 9810657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 124 - 319
Target Start/End: Original strand, 33179775 - 33179970
Alignment:
Q  124 agaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcatacaactgaaa 223  Q
    |||||||||||| |||||||| ||||||||||||||||||  |||||||||||| ||| ||||||||||||  ||||||||||||||||  || ||||||    
T  33179775 agaatttatttgattaactaagtggaaaaatagtggtcacacgcattttagttgtgtggccacatttttcactttctaaatagtggtcacgcagctgaaa 33179874  T
Q  224 aaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatctttattc 319  Q
    | || |||| ||||| ||||||||||||||||  | |||||||||| |||||||||||   || |||||||||||| |||||| ||||| ||||||    
T  33179875 agatatggtaacacataccatatatttagttaattaaaattttcgatagtggtataaagaaatatacacattaaggatgtctaccaatcattattc 33179970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 126 - 277
Target Start/End: Original strand, 55666844 - 55666993
Alignment:
Q  126 aatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcatacaactgaaaaa 225  Q
    |||||||||| |||||||| |||||||||||||||||||  |||||||||| ||||||||| ||||||||||| |||||| ||||||  |||||||||||    
T  55666844 aatttatttgcttaactaagtggaaaaatagtggtcacgaacattttagtt-cgtgaccacgtttttcagcttataaataatggtcacgcaactgaaaaa 55666942  T
Q  226 atttggtcacacagaccatatatttagttacctgaaattttcgagagtggta 277  Q
     | ||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  55666943 -tgtggtcacacagaccatatatttagttaactgaaattttcgaaagtggta 55666993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 114 - 266
Target Start/End: Original strand, 35544426 - 35544577
Alignment:
Q  114 ctatttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcat 213  Q
    |||||| |||| ||||||||| ||||| ||| ||||||||||||| ||||  |||||| |||||||||||||||||||||||||||||||||||||||||    
T  35544426 ctatttatccaaaatttatttagttaattaagtggaaaaatagtgatcacacgcattt-agttgcgtgaccacatttttcagcttctaaatagtggtcat 35544524  T
Q  214 acaactgaaaaaatttggtcacacagaccatatatttagttacctgaaatttt 266  Q
    ||||| |||||||| || ||||||| |||||||||||  ||| ||||||||||    
T  35544525 acaacggaaaaaatgtgatcacacataccatatatttgattaactgaaatttt 35544577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 61 - 226
Target Start/End: Original strand, 1966787 - 1966950
Alignment:
Q  61 cagttaaccaaatatatggtttgtgtgatcacannnnnnnaattgcgtgatccctatttttccagaatttatttggttaactaaatggaaaaatagtggt 160  Q
    |||||||||||||||||||| ||||||| ||||       | |||||||| | ||| ||||||||||||||||||||||| ||| |||||||||||||||    
T  1966787 cagttaaccaaatatatggtctgtgtgaccacatttttt-agttgcgtgaccactagttttccagaatttatttggttaattaagtggaaaaatagtggt 1966885  T
Q  161 cacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcatacaactgaaaaaa 226  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||    
T  1966886 cacgcgca-tttagttgcgtgaccacatttttcagcttctaaatagtggtcacgcaactaaaaaaa 1966950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 116 - 319
Target Start/End: Original strand, 17633349 - 17633552
Alignment:
Q  116 atttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttc-agcttctaaatagtggtcata 214  Q
    |||| |||| ||||||||||||||||||| |  |||||||||||||||| |||||||||||||||||||| ||||||| | |||||| || |||||||      
T  17633349 atttgtccaaaatttatttggttaactaagttaaaaaatagtggtcacgcgcattttagttgcgtgaccatatttttcaaacttctagat-gtggtcacg 17633447  T
Q  215 caactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatctt 314  Q
    ||||||||||||| |||||||||||||||||||||| |||| ||||||||||  | ||||||| |||  | | |||| ||||||||| || | | |||||    
T  17633448 caactgaaaaaatgtggtcacacagaccatatatttggttaactgaaatttttcaaagtggtacaaaggggtgtacatattaagggtatcaacctatctt 17633547  T
Q  315 tattc 319  Q
    |||||    
T  17633548 tattc 17633552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 104 - 317
Target Start/End: Complemental strand, 19596895 - 19596680
Alignment:
Q  104 tgcgtgatccctatttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaa 203  Q
    ||||||| | |||| ||| |||||||||||||||||||||| |||  ||||||| |||| | ||||||||||||||||||||||||||||||||||||||    
T  19596895 tgcgtgaccactatgttttcagaatttatttggttaactaagtgggtaaatagtagtcatgcgcattttagttgcgtgaccacatttttcagcttctaaa 19596796  T
Q  204 tagtggtcatacaactg--aaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggt 301  Q
    || |||| | ||| |||  ||||||| ||||||| | |||||||||||| || | | || |||||  ||||||||| |||  | | |||||||||| | |    
T  19596795 taatggttacacagctgaaaaaaaatgtggtcacgctgaccatatatttggtcaacagagatttttcagagtggtacaaaggggtgtacacattaaagat 19596696  T
Q  302 gtctatcaatctttat 317  Q
    ||||||||||||||||    
T  19596695 gtctatcaatctttat 19596680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 118 - 319
Target Start/End: Original strand, 8740801 - 8741002
Alignment:
Q  118 ttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcatacaa 217  Q
    ||||||| ||||||||| ||||||||| | ||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||| |||  |||    
T  8740801 ttttccataatttatttagttaactaagtagaaaaatagtggtcacgcgcattttag-tacgtgaccacatttttcagcttctaaatagtgatcacgcaa 8740899  T
Q  218 ctg-aaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatcttta 316  Q
    ||| ||||||| |||||||||||| |||| ||||  ||| |||||| ||| ||||||| || ||||  || |||||||| | | |||||| | |||||||    
T  8740900 ctgaaaaaaatatggtcacacagatcatacatttgattaactgaaaattttgagagtgatacaaaagaatgtacacattgaagatgtctaccgatcttta 8740999  T
Q  317 ttc 319  Q
    |||    
T  8741000 ttc 8741002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 114 - 267
Target Start/End: Complemental strand, 42908671 - 42908519
Alignment:
Q  114 ctatttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccaca-tttttcagcttctaaatagtggtca 212  Q
    |||||||||||||||||||||||||||||||  ||||| |||||||||||| ||||||||||||||||| |||| ||||||| ||| ||||| |||||||    
T  42908671 ctatttttccagaatttatttggttaactaagaggaaacatagtggtcacgcgcattttagttgcgtgatcacattttttcaacttttaaat-gtggtca 42908573  T
Q  213 tacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttc 267  Q
     ||||||| |||||| |||||| ||||||||||||||| |||  || ||||||||    
T  42908572 cacaactg-aaaaatatggtcaaacagaccatatatttggttcactaaaattttc 42908519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 117 - 236
Target Start/End: Complemental strand, 2433811 - 2433693
Alignment:
Q  117 tttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcataca 216  Q
    ||||| || |||||||||||||||| || || ||||||||||||||||||||||||  || | ||||||||||||||||||||||||||||||||| |||    
T  2433811 ttttttcataatttatttggttaacaaagtgaaaaaatagtggtcacgtgcatttttttt-catgaccacatttttcagcttctaaatagtggtcaaaca 2433713  T
Q  217 actgaaaaaatttggtcaca 236  Q
    ||||||||||| || |||||    
T  2433712 actgaaaaaatgtgatcaca 2433693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 62 - 276
Target Start/End: Complemental strand, 14351217 - 14351005
Alignment:
Q  62 agttaaccaaatatatggtttgtgtgatcacannnnnnnaattgcgtgatccctatttttccagaatttatttggttaactaaatggaaaaatagtggtc 161  Q
    ||||||||||||||||||||||||||| || |       | |||||||| | |||||||  || ||||||||||||||||||| ||||||||||||||||    
T  14351217 agttaaccaaatatatggtttgtgtgaccatatttttctagttgcgtgaccactattttgacaaaatttatttggttaactaagtggaaaaatagtggtc 14351118  T
Q  162 acgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaa 261  Q
    | |  |||||||||||||||| ||||| ||| |||||| |||||||||| || ||| ||  ||||| ||  || ||| |   ||||||| |||| |||||    
T  14351117 atggacattttagttgcgtgatcacatcttttagcttcaaaatagtggttatgcaattg--aaaatgtgaccatacaaattgtatatttggttaactgaa 14351020  T
Q  262 attttcgagagtggt 276  Q
    |||||||||||||||    
T  14351019 attttcgagagtggt 14351005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 126 - 224
Target Start/End: Original strand, 33249634 - 33249732
Alignment:
Q  126 aatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcatacaactgaaaa 224  Q
    |||||||||| |||||||  ||||||||||||||||||  ||||||||  ||||||||||||||||||| |||||||||||||||||  ||||||||||    
T  33249634 aatttatttgattaactaggtggaaaaatagtggtcacacgcattttatgtgcgtgaccacatttttcaccttctaaatagtggtcacgcaactgaaaa 33249732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 127 - 204
Target Start/End: Complemental strand, 24669274 - 24669197
Alignment:
Q  127 atttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaat 204  Q
    |||||||||||||||||| || |||||||||||||||  | |||||||||||||||||| |||||| || ||||||||    
T  24669274 atttatttggttaactaagtgaaaaaatagtggtcacacgaattttagttgcgtgaccatatttttgagtttctaaat 24669197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 238
Target Start/End: Complemental strand, 20874880 - 20874812
Alignment:
Q  170 tttagttgcgtgaccacatttttcagcttctaaatagtggtcatacaactgaaaaaatttggtcacaca 238  Q
    ||||||||||| |||||||||||||||||||||| |||| |||  ||||||||||||| ||||||||||    
T  20874880 tttagttgcgttaccacatttttcagcttctaaaaagtgatcacgcaactgaaaaaatatggtcacaca 20874812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 306
Target Start/End: Complemental strand, 1966841 - 1966741
Alignment:
Q  204 tagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgt 303  Q
    |||||||||  ||||| ||||||| |||||||||||||||||||||| |||| ||||||||||| ||||||||| |||| | | || ||| |||||||||    
T  1966841 tagtggtcacgcaact-aaaaaatgtggtcacacagaccatatatttggttaactgaaattttc-agagtggtacaaaagggtgtatacagtaagggtgt 1966744  T
Q  304 cta 306  Q
    |||    
T  1966743 cta 1966741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 200 - 277
Target Start/End: Original strand, 24669270 - 24669347
Alignment:
Q  200 taaatagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggta 277  Q
    |||||||||||||  ||||||||||||| ||||||||||||||||||||||  ||| || |||||||  |||||||||    
T  24669270 taaatagtggtcacgcaactgaaaaaatgtggtcacacagaccatatatttgattaacttaaatttttcagagtggta 24669347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 320
Target Start/End: Original strand, 19746943 - 19747034
Alignment:
Q  229 tggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatctttattct 320  Q
    |||||| ||||||||| |||||||||| ||||||||||||||| || || |||  | | ||||||||||  |||||||  ||||||||||||    
T  19746943 tggtcaaacagaccatgtatttagttaactgaaattttcgagaatgatacaaaggggtgtacacattaaaagtgtctactaatctttattct 19747034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 320
Target Start/End: Complemental strand, 19792863 - 19792772
Alignment:
Q  229 tggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatctttattct 320  Q
    |||||| ||||||||| |||||||||| ||||||||||||||| || || |||  | | ||||||||||  |||||||  ||||||||||||    
T  19792863 tggtcaaacagaccatgtatttagttaactgaaattttcgagaatgatacaaaggggtgtacacattaaaagtgtctactaatctttattct 19792772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 318
Target Start/End: Original strand, 25007625 - 25007711
Alignment:
Q  231 gtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatctttatt 318  Q
    |||||| ||||||||||||| |||| ||||||||||||||| |||||  ||| | | || |||||||| ||||||| |||||||||||    
T  25007625 gtcacatagaccatatatttggttaactgaaattttcgagaatggta-caaagggtgtatacattaagagtgtctaccaatctttatt 25007711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 298
Target Start/End: Original strand, 9810881 - 9810958
Alignment:
Q  221 aaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaag 298  Q
    ||||||| |||||||||||||||||||||| |||| || ||| |||| ||||||||| |||  | | |||||||||||    
T  9810881 aaaaaatgtggtcacacagaccatatatttggttaacttaaaatttctagagtggtacaaataggtttacacattaag 9810958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 201 - 306
Target Start/End: Original strand, 14351160 - 14351265
Alignment:
Q  201 aaatagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaaggg 300  Q
    ||||||||||||  |||||  |||||| |||||||||| ||||||||||| |||| || || |||| |||||||||| |||    |  ||||||||||||    
T  14351160 aaatagtggtcacgcaactagaaaaatatggtcacacaaaccatatatttggttaactaaattttttgagagtggtacaaagaagtgcacacattaaggg 14351259  T
Q  301 tgtcta 306  Q
    ||||||    
T  14351260 tgtcta 14351265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 306
Target Start/End: Original strand, 19596901 - 19596986
Alignment:
Q  221 aaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtcta 306  Q
    ||||||| |||||||||  ||||||||||| |||| ||||||||||| | |  |||| |||| ||| ||||||||||||| |||||    
T  19596901 aaaaaatgtggtcacacgtaccatatatttggttaactgaaattttccaaaagggtacaaaaggatgtacacattaagggcgtcta 19596986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 1966978 - 1967016
Alignment:
Q  188 tttttcagcttctaaatagtggtcatacaactgaaaaaa 226  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  1966978 tttttcagcttctaaatagtggtcacgcaactgaaaaaa 1967016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 298
Target Start/End: Original strand, 9809194 - 9809271
Alignment:
Q  221 aaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaag 298  Q
    ||||||| ||||||||||||||||||| || |||| || ||| |||| ||||||||| |||  | | |||||||||||    
T  9809194 aaaaaatgtggtcacacagaccatatacttggttaacttaaaatttctagagtggtacaaataggtttacacattaag 9809271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 266
Target Start/End: Complemental strand, 17633333 - 17633288
Alignment:
Q  221 aaaaaatttggtcacacagaccatatatttagttacctgaaatttt 266  Q
    ||||||| |||||||||||||||||||||| |||| || |||||||    
T  17633333 aaaaaatgtggtcacacagaccatatatttggttaactaaaatttt 17633288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 319
Target Start/End: Complemental strand, 20871827 - 20871742
Alignment:
Q  234 acacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatctttattc 319  Q
    ||||| |||||||||||  |||  |||||||||  ||||| |||||||| ||  ||||||| |||  |||||||||||||||||||    
T  20871827 acacataccatatatttgattaattgaaatttttcagagtagtataaaaagacgtacacatcaagcatgtctatcaatctttattc 20871742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 277
Target Start/End: Original strand, 42908685 - 42908741
Alignment:
Q  221 aaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggta 277  Q
    ||||||| |||||||||| ||||||||||| |||| || |||||||  |||||||||    
T  42908685 aaaaaatgtggtcacacataccatatatttggttaacttaaatttttcagagtggta 42908741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 116; Significance: 6e-59; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 114 - 281
Target Start/End: Original strand, 42637962 - 42638129
Alignment:
Q  114 ctatttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcat 213  Q
    |||||||| |||||||||||||||||||||| | ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||     
T  42637962 ctattttttcagaatttatttggttaactaagttgaaaaatagtggttacgcgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcac 42638061  T
Q  214 acaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaa 281  Q
     ||||||||||||| |||||| | | |||||||||||||||| ||||||||||||||||| |||||||    
T  42638062 gcaactgaaaaaatgtggtcatatataccatatatttagttaactgaaattttcgagagttgtataaa 42638129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 103 - 320
Target Start/End: Complemental strand, 3786076 - 3785859
Alignment:
Q  103 ttgcgtgatccctatttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacattttt-cagcttcta 201  Q
    |||||||| | ||||||||||| ||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||| |||||| |||||| ||    
T  3786076 ttgcgtgaccactatttttccataatttatttggttaactaagtggaaaaa-agtggtcacgcgcattttagttgcgtgaccatattttttcagcttata 3785978  T
Q  202 aatagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggt 301  Q
    |||||||||||   ||| |||||||| ||||||||||||||||| | || |||| ||||||||||||||||||||| |||  | | ||||||||||||||    
T  3785977 aatagtggtcacgtaacagaaaaaatgtggtcacacagaccataaaattggttaactgaaattttcgagagtggtacaaaggggtgtacacattaagggt 3785878  T
Q  302 gtctatcaatctttattct 320  Q
    ||||| |||||||||||||    
T  3785877 gtctaccaatctttattct 3785859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 103 - 320
Target Start/End: Complemental strand, 3823766 - 3823548
Alignment:
Q  103 ttgcgtgatccctatttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacattttt--cagcttct 200  Q
    |||||||| | ||||||||||| ||||||||||||||||||| |||||||| |||||||||  |||||||||||||||||||| ||||||  |||||| |    
T  3823766 ttgcgtgaccactatttttccataatttatttggttaactaagtggaaaaa-agtggtcacacgcattttagttgcgtgaccatatttttttcagcttat 3823668  T
Q  201 aaatagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaaggg 300  Q
    ||||||||||||  |||| |||||||| ||||||||||||||||||| || |||| ||||||||||||||||||||| |||  | | |||||||||||||    
T  3823667 aaatagtggtcacgcaacagaaaaaatgtggtcacacagaccatataattggttaactgaaattttcgagagtggtacaaaggggtgtacacattaaggg 3823568  T
Q  301 tgtctatcaatctttattct 320  Q
    ||||||  ||||||||||||    
T  3823567 tgtctactaatctttattct 3823548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 61 - 250
Target Start/End: Original strand, 26308593 - 26308782
Alignment:
Q  61 cagttaaccaaatatatggtttgtgtgatcacannnnnnnaattgcgtgatccctatttttccagaatttatttggttaactaaatggaaaaatagtggt 160  Q
    |||||||| ||||||||||||||||||| ||||       | ||| |||| | ||| ||||||||||||||||||||||| ||| |||||||||||||||    
T  26308593 cagttaactaaatatatggtttgtgtgaccacattgttttagttgtgtgaccactaattttccagaatttatttggttaagtaagtggaaaaatagtggt 26308692  T
Q  161 cacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcatacaactgaaaaaatttggtcacacagaccatatattt 250  Q
    |||| |||||||| ||||||||||||||| |||||||||||||||||||||  | || || |||||| ||| |||||| |||||||||||    
T  26308693 cacgcgcattttaattgcgtgaccacattattcagcttctaaatagtggtcccagaattggaaaaatgtggccacacaaaccatatattt 26308782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 114 - 320
Target Start/End: Complemental strand, 44080359 - 44080153
Alignment:
Q  114 ctatttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcat 213  Q
    ||||||||||| ||||| ||||||||||||| |||||||||||||| ||||  ||||||||||  |||||||||||||||| |||||||||||||||||     
T  44080359 ctatttttccaaaatttttttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacatttttcaacttctaaatagtggtcac 44080261  T
Q  214 acaactg-aaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatc 312  Q
     |||||| ||||||| ||||||||||||  |||||||| |||| |||||||| |  ||||||||| |||   || |||||||||||| | |||||| |||    
T  44080260 gcaactgcaaaaaatatggtcacacagattatatatttggttaactgaaattgttcagagtggtacaaagatatgtacacattaaggatatctatcgatc 44080161  T
Q  313 tttattct 320  Q
    ||||||||    
T  44080160 tttattct 44080153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 114 - 319
Target Start/End: Original strand, 4169111 - 4169305
Alignment:
Q  114 ctatttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcat 213  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||     
T  4169111 ctattttttcagaatttatttggttaactaaatggaaaaatagtggtcacgcacattttagttgcgttaccacatttttcagcttctaaatagtggtcac 4169210  T
Q  214 acaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatct 313  Q
     |         ||| || ||||| |||||||||||||||||| |||||||||||||||  |||| |||| |   |||| ||||| | || ||||||||||    
T  4169211 gc---------aatgtgatcacatagaccatatatttagttaactgaaattttcgagataggtacaaaagg--gtacatattaaagttgactatcaatct 4169299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 123 - 320
Target Start/End: Original strand, 9710739 - 9710930
Alignment:
Q  123 cagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcatacaactgaa 222  Q
    |||||||||||||||||||||| ||||||||||||||||| ||| |||| ||||||||||||||| |||||||||||||| |||||||||  |||| |||    
T  9710739 cagaatttatttggttaactaagtggaaaaatagtggtcaagtgtattt-agttgcgtgaccacagttttcagcttctaagtagtggtcacgcaaccgaa 9710837  T
Q  223 aaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatctttattct 320  Q
    ||||| ||||||     ||||||||||| |||| ||||||||||  ||||||||| |||  | | |||| ||||||||| |||| |||||||||||||    
T  9710838 aaaatatggtca-----accatatatttggttaactgaaatttttcagagtggtacaaaggggtgtacatattaagggtttctaccaatctttattct 9710930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 118 - 320
Target Start/End: Original strand, 1705680 - 1705880
Alignment:
Q  118 ttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcatacaa 217  Q
    |||||||||| ||||||||||||||||  |||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||  |||    
T  1705680 ttttccagaaattatttggttaactaaggggaaaaatagtggtcacgcgcattttagttgcatgaccatatttttcagcttctaaatagtggtcacgcaa 1705779  T
Q  218 ctgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatctttat 317  Q
    ||  |||||| || ||||||| | ||| ||||| |||| ||||||||||  | | || || | || ||| ||||||||||||||||  ||| || |||||    
T  1705780 ct--aaaaatatgatcacacatatcatgtatttggttaactgaaattttttacaatgatacacaaggatgtacacattaagggtgttaatctatttttat 1705877  T
Q  318 tct 320  Q
    |||    
T  1705878 tct 1705880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 126 - 319
Target Start/End: Complemental strand, 19280288 - 19280098
Alignment:
Q  126 aatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcatacaactgaaaaa 225  Q
    ||||||||||||||||||| ||||||| ||||||||||| | ||||||||||||||||||||||||||| |||||||| ||||||||  || ||||||||    
T  19280288 aatttatttggttaactaagtggaaaa-tagtggtcacgcgaattttagttgcgtgaccacatttttcaacttctaaacagtggtcacgcatctgaaaaa 19280190  T
Q  226 atttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatctttattc 319  Q
    || ||||||| |||||||||||||| |||| || |||| ||    ||||||| |||  | | ||||| ||||||||||||| | ||||||||||    
T  19280189 atgtggtcactcagaccatatatttggttaactaaaatatt--ttagtggtacaaaggggtgtacactttaagggtgtctaccgatctttattc 19280098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 123 - 260
Target Start/End: Complemental strand, 5341970 - 5341833
Alignment:
Q  123 cagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcatacaactgaa 222  Q
    |||||||||||||||||||||| |||||||||||||||||  || ||||||||||  ||||||||||||||| |||||||||||||||||  || || ||    
T  5341970 cagaatttatttggttaactaagtggaaaaatagtggtcatatgtattttagttgtatgaccacatttttcaacttctaaatagtggtcacgcagctaaa 5341871  T
Q  223 aaaatttggtcacacagaccatatatttagttacctga 260  Q
    ||||| |||||||||| |||||||||||| ||| ||||    
T  5341870 aaaatatggtcacacaaaccatatatttaattaactga 5341833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 116 - 266
Target Start/End: Complemental strand, 19624406 - 19624257
Alignment:
Q  116 atttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcatac 215  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||| |||||| ||| ||||| |||||| |||||| ||    
T  19624406 atttttccagaatttatgtggttaactaagtggaaaaatagtggtcacgtgcattttagttgggtggccacatattttagcttataaata-tggtcacac 19624308  T
Q  216 aactgaaaaaatttggtcacacagaccatatatttagttacctgaaatttt 266  Q
    ||||||| |||| || ||||  |||| ||||||||  ||| ||||||||||    
T  19624307 aactgaagaaatatgatcacttagactatatatttgattaactgaaatttt 19624257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 151 - 316
Target Start/End: Complemental strand, 11509969 - 11509804
Alignment:
Q  151 aaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcatacaactgaaaaaatttggtcacacagaccatatattt 250  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||  |||||  ||| ||||||||| |||||||||| | |  ||||||    
T  11509969 aaataggggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaataaaggtcacgcaagtgaaaaaatgtggtcacacaaatcgcatattt 11509870  T
Q  251 agttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatcttta 316  Q
     ||||  |||||||||  ||||||||| |||  | | ||||||||||| |||||||||||||||||    
T  11509869 ggttatttgaaatttttaagagtggtacaaaggggtgtacacattaagtgtgtctatcaatcttta 11509804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 114 - 227
Target Start/End: Complemental strand, 31545719 - 31545606
Alignment:
Q  114 ctatttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcat 213  Q
    ||||||||||||||||||||| ||||||||| | ||||||||||||||| |  ||||||||||| |||||||||||||||||||||||||||||||| |     
T  31545719 ctatttttccagaatttattttgttaactaagtagaaaaatagtggtcatgcacattttagttgtgtgaccacatttttcagcttctaaatagtggttac 31545620  T
Q  214 acaactgaaaaaat 227  Q
     |||||||||||||    
T  31545619 tcaactgaaaaaat 31545606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 127 - 204
Target Start/End: Original strand, 27335402 - 27335479
Alignment:
Q  127 atttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaat 204  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  27335402 atttatttggttaactaagtggaaaaatagtggtcacgtgtattttagttgtgtgaccacatttttcagcttctaaat 27335479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 115 - 212
Target Start/End: Complemental strand, 42481402 - 42481305
Alignment:
Q  115 tatttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtca 212  Q
    ||||||| |||||||||||||||||||||| | |||||||| ||||||||| ||||||||||| ||||||| ||||||||| || |||||||||||||    
T  42481402 tattttttcagaatttatttggttaactaagtagaaaaataatggtcacgtacattttagttgtgtgaccatatttttcagtttttaaatagtggtca 42481305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 114 - 320
Target Start/End: Complemental strand, 22432433 - 22432234
Alignment:
Q  114 ctatttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcat 213  Q
    |||||||| || |||||||||||| |||||  |||||||||||||| |||  ||||||||||||  ||||||||||||||||||| |||||||||| ||     
T  22432433 ctattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttcagcttttaaatagtggacac 22432334  T
Q  214 acaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatct 313  Q
     ||||||||||||| ||||       ||||||| |||  ||| |||||||||||||||||  || ||    || |||||||||||| || ||| ||||||    
T  22432333 gcaactgaaaaaatatggt-------accatatttttgattaactgaaattttcgagagtaatacaaggatatgtacacattaaggatgcctaccaatct 22432241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 114 - 250
Target Start/End: Complemental strand, 27707776 - 27707641
Alignment:
Q  114 ctatttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcat 213  Q
    |||||||||||||||||||||||||||  || || |||||||||||||| |  ||||||||||| | |||||||||||| || ||| |||| |||||||     
T  27707776 ctatttttccagaatttatttggttaatcaagtgaaaaaatagtggtcatgcacattttagttgtgcgaccacattttttagtttcaaaat-gtggtcac 27707678  T
Q  214 acaactgaaaaaatttggtcacacagaccatatattt 250  Q
    |||| ||||||||| ||| |||||| |||||||||||    
T  27707677 acaattgaaaaaatgtgggcacacaaaccatatattt 27707641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 117 - 225
Target Start/End: Original strand, 13358101 - 13358208
Alignment:
Q  117 tttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcataca 216  Q
    ||||| || ||||||||||||||||||  ||||||||||||||| ||| |||||||| ||| ||||||| ||||||||||||||||||| ||||||| ||    
T  13358101 ttttttcaaaatttatttggttaactatgtggaaaaatagtggtaacgcgcattttaattgtgtgaccatatttttcagcttctaaata-tggtcatgca 13358199  T
Q  217 actgaaaaa 225  Q
    | |||||||    
T  13358200 attgaaaaa 13358208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 125 - 281
Target Start/End: Original strand, 34627316 - 34627468
Alignment:
Q  125 gaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacattttt-cagcttctaaatagtggtcatacaactgaaa 223  Q
    ||||||||||||||||||||||||||||||| |||| || || ||||||||||||||||||||||||| | | || |||||||||  | | |||||||||    
T  34627316 gaatttatttggttaactaaatggaaaaataatggttacatgtattttagttgcgtgaccacatttttccgggttttaaatagtgtccttgcaactgaaa 34627415  T
Q  224 aaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaa 281  Q
    |||| | |||||||||| ||||    |||||| ||||||||||| | | |||||||||    
T  34627416 aaatgt-gtcacacagatcata----tagttaactgaaattttctataatggtataaa 34627468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 149 - 277
Target Start/End: Complemental strand, 23163397 - 23163268
Alignment:
Q  149 aaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcatacaactg--aaaaaatttggtcacacagaccatat 246  Q
    ||||||| || |||||||||||||||||| ||||||| |||||||||| |||| ||||||||||| ||||||  ||||||| | |||||| |||||||||    
T  23163397 aaaaataatgatcacgtgcattttagttgtgtgaccatatttttcagc-tctacatagtggtcatgcaactgataaaaaatgtagtcacatagaccatat 23163299  T
Q  247 atttagttacctgaaattttcgagagtggta 277  Q
    |||   ||| |||| ||||||||||||||||    
T  23163298 attagattaactgatattttcgagagtggta 23163268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 114 - 267
Target Start/End: Original strand, 27079302 - 27079454
Alignment:
Q  114 ctatttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagctt--ctaaatagtggtc 211  Q
    ||||||||| | |||||||||| |||||||| |||||||||  |||||||| ||||||||| | |||||||||||||||    ||    |||| ||||||    
T  27079302 ctatttttctataatttatttgattaactaagtggaaaaatgatggtcacgcgcattttagctacgtgaccacattttt---tttgaaaaaattgtggtc 27079398  T
Q  212 atacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttc 267  Q
    || ||||||||||| | |||||||||||||||||||||| |||| | |||||||||    
T  27079399 atgcaactgaaaaattgtggtcacacagaccatatatttggttaaccgaaattttc 27079454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 114 - 267
Target Start/End: Original strand, 27085099 - 27085251
Alignment:
Q  114 ctatttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagctt--ctaaatagtggtc 211  Q
    ||||||||| | |||||||||| |||||||| |||||||||  |||||||| ||||||||| | |||||||||||||||    ||    |||| ||||||    
T  27085099 ctatttttctataatttatttgattaactaagtggaaaaatgatggtcacgcgcattttagctacgtgaccacattttt---tttgaaaaaattgtggtc 27085195  T
Q  212 atacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttc 267  Q
    || ||||||||||| | |||||||||||||||||||||| |||| | |||||||||    
T  27085196 atgcaactgaaaaattgtggtcacacagaccatatatttggttaaccgaaattttc 27085251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 127 - 204
Target Start/End: Original strand, 27326047 - 27326124
Alignment:
Q  127 atttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaat 204  Q
    |||||||| |||||| || |||||||||||||||||| || ||||||||||||||||||||||||| || ||||||||    
T  27326047 atttatttagttaaccaactggaaaaatagtggtcacatgtattttagttgcgtgaccacattttttagtttctaaat 27326124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 127 - 204
Target Start/End: Original strand, 27332284 - 27332361
Alignment:
Q  127 atttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaat 204  Q
    |||||||| |||||| || |||||||||||||||||| || ||||||||||||||||||||||||| || ||||||||    
T  27332284 atttatttagttaaccaactggaaaaatagtggtcacatgtattttagttgcgtgaccacattttttagtttctaaat 27332361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 127 - 204
Target Start/End: Original strand, 27365008 - 27365085
Alignment:
Q  127 atttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaat 204  Q
    |||||||||||||| ||| ||||||||||||||||||  | ||||||| |||||||| ||||||||||| ||||||||    
T  27365008 atttatttggttaattaagtggaaaaatagtggtcacacgtattttagctgcgtgactacatttttcagtttctaaat 27365085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 201 - 297
Target Start/End: Original strand, 31545714 - 31545810
Alignment:
Q  201 aaatagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaa 297  Q
    |||||||||||| |||||| ||||||| |||||||| ||||||||||||  |||||||||||||||  |||||| || |||| ||| |||| |||||    
T  31545714 aaatagtggtcacacaactaaaaaaatgtggtcacatagaccatatattaggttacctgaaatttttcagagtgatacaaaaagatgtacatattaa 31545810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 11501361 - 11501309
Alignment:
Q  126 aatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgc 178  Q
    ||||||||||||||||||| |||||||||||||||||||  ||||||||||||    
T  11501361 aatttatttggttaactaattggaaaaatagtggtcacgcacattttagttgc 11501309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 219 - 277
Target Start/End: Original strand, 13358992 - 13359050
Alignment:
Q  219 tgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggta 277  Q
    ||||||||| || |||||||||||||||||||| ||| ||||||||||| |||||||||    
T  13358992 tgaaaaaatatgatcacacagaccatatatttaattaactgaaattttccagagtggta 13359050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 126 - 192
Target Start/End: Complemental strand, 39126254 - 39126189
Alignment:
Q  126 aatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacattttt 192  Q
    ||||||||||||||||||| ||||||||||||| || || || |||||||||||| |||||||||||    
T  39126254 aatttatttggttaactaagtggaaaaatagtgatcgcgcgc-ttttagttgcgtaaccacattttt 39126189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 156 - 250
Target Start/End: Complemental strand, 41571904 - 41571810
Alignment:
Q  156 gtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcatacaactgaaaaaatttggtcacacagaccatatattt 250  Q
    |||||||||| |||||||  || |||| ||||||||||| ||| |||||||||||||   |||||||||||| |||| ||| | |||||||||||    
T  41571904 gtggtcacgtacattttaactgtgtgatcacatttttcaacttttaaatagtggtcacgtaactgaaaaaatgtggttacatataccatatattt 41571810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 320
Target Start/End: Complemental strand, 31545486 - 31545423
Alignment:
Q  257 ctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatctttattct 320  Q
    ||||||||||||||||| ||| |||  ||| |||||||||| |||||||| |||||||||||||    
T  31545486 ctgaaattttcgagagtagtacaaagggatatacacattaaaggtgtctaccaatctttattct 31545423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 306
Target Start/End: Original strand, 19280298 - 19280400
Alignment:
Q  204 tagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgt 303  Q
    ||||||||| || ||| ||||||| | ||||||||||||||||||||  ||| || ||| |||  ||||||||| |||  | | ||||||||||||||||    
T  19280298 tagtggtcacaccacttaaaaaatgttgtcacacagaccatatatttgattaactaaaaattttcagagtggtacaaacgggtgtacacattaagggtgt 19280397  T
Q  304 cta 306  Q
    |||    
T  19280398 cta 19280400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 186
Target Start/End: Complemental strand, 23163837 - 23163787
Alignment:
Q  136 gttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccac 186  Q
    ||||||||| || | ||||||||||||||| ||||||||||||||||||||    
T  23163837 gttaactaagtgaagaaatagtggtcacgtacattttagttgcgtgaccac 23163787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 266
Target Start/End: Complemental strand, 26308648 - 26308586
Alignment:
Q  204 tagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaatttt 266  Q
    ||||||||| |||||| ||| ||| |||||||||| |||||||||||||||| |||| |||||    
T  26308648 tagtggtcacacaactaaaacaatgtggtcacacaaaccatatatttagttaactgatatttt 26308586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 204 - 277
Target Start/End: Complemental strand, 1705678 - 1705605
Alignment:
Q  204 tagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggta 277  Q
    |||||||||||||||| ||||||| |  ||||||| |||||||||||||| | || |||||||  |||||||||    
T  1705678 tagtggtcatacaactaaaaaaatataatcacacaaaccatatatttagtaaacttaaatttttcagagtggta 1705605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 201 - 250
Target Start/End: Original strand, 22432428 - 22432477
Alignment:
Q  201 aaatagtggtcatacaactgaaaaaatttggtcacacagaccatatattt 250  Q
    ||||||||||||| ||||| ||||||| | ||||||||||||||||||||    
T  22432428 aaatagtggtcatgcaactaaaaaaatgtagtcacacagaccatatattt 22432477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 320
Target Start/End: Original strand, 27040683 - 27040799
Alignment:
Q  204 tagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgt 303  Q
    |||||||||  ||||||||||| | || ||||||||| ||||||||| |||| | ||||||||| ||||| ||| |||   || |||||||| || ||||    
T  27040683 tagtggtcacgcaactgaaaaattgtgatcacacagatcatatatttggttaaccgaaattttctagagtagtacaaaggaatgtacacattgagagtgt 27040782  T
Q  304 ctatcaatctttattct 320  Q
    | | | |||||||||||    
T  27040783 caacctatctttattct 27040799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 162
Target Start/End: Complemental strand, 11510048 - 11509989
Alignment:
Q  103 ttgcgtgatccctatttttccagaatttatttggttaactaaatggaaaaatagtggtca 162  Q
    |||||||| | ||||||| | ||||||||||| ||||||||| || ||||||||||||||    
T  11510048 ttgcgtgagcactattttcctagaatttatttagttaactaattgaaaaaatagtggtca 11509989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 306
Target Start/End: Original strand, 18733595 - 18733677
Alignment:
Q  224 aaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtcta 306  Q
    |||| ||||||| || |||||||||||||||| || |||||||  ||| |||||||||  | | |||||||||| ||||||||    
T  18733595 aaatgtggtcacccataccatatatttagttaacttaaatttttcagaatggtataaaggggtgtacacattaaaggtgtcta 18733677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 164
Target Start/End: Complemental strand, 55165144 - 55165098
Alignment:
Q  118 ttttccagaatttatttggttaactaaatggaaaaatagtggtcacg 164  Q
    ||||||||||||||||||  ||||||| |||||||||||| ||||||    
T  55165144 ttttccagaatttatttgaataactaagtggaaaaatagtagtcacg 55165098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 18733576 - 18733539
Alignment:
Q  127 atttatttggttaactaaatggaaaaatagtggtcacg 164  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  18733576 atttatttggttaactaagtggaaaaatagtgctcacg 18733539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 5341987 - 5342039
Alignment:
Q  214 acaactgaaaaaatttggtcacacagaccatatatttagttacctgaaatttt 266  Q
    |||||| ||||||| |||||||||||||||||||||   ||| ||||||||||    
T  5341987 acaactaaaaaaatgtggtcacacagaccatatattcgattaactgaaatttt 5342039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 61 - 273
Target Start/End: Original strand, 10304654 - 10304865
Alignment:
Q  61 cagttaaccaaatatatggtttgtgtgatcacannnnnnnaattgcgtgatccctatttttccagaatttatttggttaactaaatggaaaaatagtggt 160  Q
    |||||||||||||||||||| ||||||| ||||       |||||||||| | || |||||||||||||||||||||||||||| || ||||||||||||    
T  10304654 cagttaaccaaatatatggtctgtgtgaccacacttttt-aattgcgtgaccactttttttccagaatttatttggttaactaagtgaaaaaatagtggt 10304752  T
Q  161 cacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctga 260  Q
    |||| |||||||||||||||||||  ||||||| |||||||||||||| |||  ||||||||||||| ||||||||||||||||||||||||||  || |    
T  10304753 cacgcgcattttagttgcgtgaccgtatttttctgcttctaaatagtgatcacgcaactgaaaaaatgtggtcacacagaccatatatttagttcactaa 10304852  T
Q  261 aattttcgagagt 273  Q
    |||||||||||||    
T  10304853 aattttcgagagt 10304865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 118 - 317
Target Start/End: Complemental strand, 3222530 - 3222332
Alignment:
Q  118 ttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcatacaa 217  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||| | |||||||||||||  |||    
T  3222530 ttttccagaatttatttggttaactaagtggaaaaatagtggtcacgtacattttagttgcgtgaccgcatttttcagcatttaaatagtggtcacgcaa 3222431  T
Q  218 ctgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatctttat 317  Q
    |||||||||| |||||||| | ||||||||||| ||||  |||||||||  |||||  ||  ||| | | ||||||||||||||||||||||||||||||    
T  3222430 ctgaaaaaatgtggtcacagacaccatatatttggttatttgaaatttttaagagtaata-caaagggtgtacacattaagggtgtctatcaatctttat 3222332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 117 - 255
Target Start/End: Original strand, 33815025 - 33815163
Alignment:
Q  117 tttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcataca 216  Q
    ||||| |||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  33815025 ttttttcagaatttatttggttaactaagtggaaaaatggtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcacgca 33815124  T
Q  217 actgaaaaaatttggtcacacagaccatatatttagtta 255  Q
    ||||||||||| ||||||||||||| |||||||||||||    
T  33815125 actgaaaaaatgtggtcacacagactatatatttagtta 33815163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 103 - 319
Target Start/End: Complemental strand, 22608474 - 22608259
Alignment:
Q  103 ttgcgtgatccctatttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaa 202  Q
    |||||||| | ||| |||| ||||| ||||||| |||||||| |  |||||||||||||| |  |||||||||||| |||||||||||||||||||||||    
T  22608474 ttgcgtgaccactaatttttcagaaattatttgattaactaattcaaaaaatagtggtcatgcacattttagttgcatgaccacatttttcagcttctaa 22608375  T
Q  203 atagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtg 302  Q
    ||||||||||  ||||||| ||||| | |||||||||||||||||||| |||| || ||||||| |||||||||| |||  | | |||||||||||| |     
T  22608374 atagtggtcacgcaactga-aaaatgtagtcacacagaccatatatttggttaactaaaatttttgagagtggtacaaaggggtgtacacattaaggata 22608276  T
Q  303 tctatcaatctttattc 319  Q
    |||| |||| |||||||    
T  22608275 tctaccaatttttattc 22608259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 118 - 316
Target Start/End: Complemental strand, 23595243 - 23595055
Alignment:
Q  118 ttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcatacaa 217  Q
    |||| |||||||||||| ||||||||| |||||||||||||| |||| |        |||  |||||||||||||||||||||||||||| |||| ||||    
T  23595243 tttttcagaatttattttgttaactaagtggaaaaatagtggccacgcg--------ttg--tgaccacatttttcagcttctaaatagttgtcacacaa 23595154  T
Q  218 ctgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatcttta 316  Q
    || ||||||| ||||||||||||||||||||||||||| || ||||||||||||||| || |||| | | |||||||||| |||||||  |||||||||    
T  23595153 ctaaaaaaatatggtcacacagaccatatatttagttaacttaaattttcgagagtgatacaaaagggtgtacacattaaaggtgtctcccaatcttta 23595055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 62 - 212
Target Start/End: Original strand, 138669 - 138819
Alignment:
Q  62 agttaaccaaatatatggtttgtgtgatcacannnnnnnaattgcgtgatccctatttttccagaatttatttggttaactaaatggaaaaatagtggtc 161  Q
    ||||||||||||||||||| ||||||  ||||       | |||||||| | |||||||| |||||||||||||||| ||||| ||||||||||||||||    
T  138669 agttaaccaaatatatggtctgtgtggccacattttcttagttgcgtgaccactattttttcagaatttatttggttgactaagtggaaaaatagtggtc 138768  T
Q  162 acgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtca 212  Q
     ||  || |||||||||||||||||||||||||||||||||||||||||||    
T  138769 gcgcacaatttagttgcgtgaccacatttttcagcttctaaatagtggtca 138819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 62 - 212
Target Start/End: Original strand, 146690 - 146840
Alignment:
Q  62 agttaaccaaatatatggtttgtgtgatcacannnnnnnaattgcgtgatccctatttttccagaatttatttggttaactaaatggaaaaatagtggtc 161  Q
    ||||||||||||||||||| ||||||  ||||       | |||||||| | |||||||| |||||||||||||||| ||||| ||||||||||||||||    
T  146690 agttaaccaaatatatggtctgtgtggccacattttcttagttgcgtgaccactattttttcagaatttatttggttgactaagtggaaaaatagtggtc 146789  T
Q  162 acgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtca 212  Q
     ||  || |||||||||||||||||||||||||||||||||||||||||||    
T  146790 gcgcacaatttagttgcgtgaccacatttttcagcttctaaatagtggtca 146840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 62 - 319
Target Start/End: Original strand, 3620714 - 3620970
Alignment:
Q  62 agttaaccaaatatatggtttgtgtgatcacannnnnnnaattgcgtgatccctatttttccagaatttatttggttaactaaatggaaaaatagtggtc 161  Q
    |||||| ||||||||||||||||||||  |||       | ||||| || | |||||||| |||||||||||||||||||||| || |||||||||||||    
T  3620714 agttaaacaaatatatggtttgtgtgactacaattctttacttgcgcgaccactattttttcagaatttatttggttaactaagtgaaaaaatagtggtc 3620813  T
Q  162 acgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaa 261  Q
    || |  |||||||||| |||| ||||||||||| ||||||||||||| |||  | | || |||| | |  || ||||||||| ||||||  ||| |||||    
T  3620814 acatatattttagttgtgtgatcacatttttcaacttctaaatagtgatcacgcgattg-aaaattgtattcgcacagaccacatatttgattaactgaa 3620912  T
Q  262 attttcgagagtggtataaaatgatctacacattaagggtgtctatcaatctttattc 319  Q
    |||||||| | | ||| |||  ||| ||||||||||||  | ||||||||||||||||    
T  3620913 attttcgaaaatagtacaaagcgatgtacacattaaggccgactatcaatctttattc 3620970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 62 - 212
Target Start/End: Complemental strand, 9068560 - 9068411
Alignment:
Q  62 agttaaccaaatatatggtttgtgtgatcacannnnnnnaattgcgtgatccctatttttccagaatttatttggttaactaaatggaaaaatagtggtc 161  Q
    |||||| |||||||||||| ||||||| ||||       | |||||||| | |||||||||||||| ||||||| ||| |||| ||||||||||||  ||    
T  9068560 agttaatcaaatatatggtatgtgtgaccacatttttttagttgcgtgaccactatttttccagaacttatttgttta-ctaagtggaaaaatagtaatc 9068462  T
Q  162 acgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtca 212  Q
    ||| ||||||||| || |||||||||||||||||||| |||||||||||||    
T  9068461 acgcgcattttagatgtgtgaccacatttttcagcttttaaatagtggtca 9068411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 114 - 205
Target Start/End: Complemental strand, 2835065 - 2834974
Alignment:
Q  114 ctatttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaata 205  Q
    ||||||||||| ||||||||| |||| |||| |||||||||| |||||||| | ||||||||||| |||||| |||||||||||| ||||||    
T  2835065 ctatttttccataatttatttagttagctaagtggaaaaataatggtcacgcgtattttagttgcatgaccatatttttcagcttttaaata 2834974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 179 - 320
Target Start/End: Original strand, 11108147 - 11108288
Alignment:
Q  179 gtgaccacatttttcagcttctaaatagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtat 278  Q
    |||||||||||||||||||| |  | ||||||||  ||||||||||||| |||||||||| | ||||||||| ||||  |||| ||||  ||| |  ||     
T  11108147 gtgaccacatttttcagcttattgacagtggtcacgcaactgaaaaaatgtggtcacacaaatcatatatttggttaattgaatttttttagaataatac 11108246  T
Q  279 aaaatgatctacacattaagggtgtctatcaatctttattct 320  Q
    |||| ||| |||||||||||||||||||   |||||||||||    
T  11108247 aaaaagatatacacattaagggtgtctactgatctttattct 11108288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 128 - 306
Target Start/End: Complemental strand, 9474718 - 9474545
Alignment:
Q  128 tttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcatacaactgaaaaaat 227  Q
    ||||||||||||||||| || |||||||||||||||  |||||||| || ||||||||||||||| ||||||||       ||||  |||||||||||||    
T  9474718 tttatttggttaactaagtgaaaaaatagtggtcacacgcatttta-tttcgtgaccacattttttagcttcta-------gtcacgcaactgaaaaaat 9474627  T
Q  228 ttg--gtcacacagaccatatatttagttacctgaaa-ttttcgagagtggtataaaatgatctacacattaagggtgtcta 306  Q
     ||  |||| | ||| |||||| |||| || |||||| ||||| ||||||||| |||| ||| || |||||||| |||||||    
T  9474626 gtggtgtcatatagatcatatagttagctaactgaaatttttcaagagtggtacaaaaggatgtatacattaagagtgtcta 9474545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 164
Target Start/End: Original strand, 2430613 - 2430663
Alignment:
Q  114 ctatttttccagaatttatttggttaactaaatggaaaaatagtggtcacg 164  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  2430613 ctattttttcagaatttatttggttaactaagtggaaaaatagtggtcacg 2430663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 201 - 318
Target Start/End: Complemental strand, 7706876 - 7706758
Alignment:
Q  201 aaatagtggtcatacaactgaaaaaatt-tggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagg 299  Q
    ||||||||||||  |||||||||||| | |||||||||| ||||||||||   ||| || |||||||  ||| ||||| |||| ||| |||||||||| |    
T  7706876 aaatagtggtcacgcaactgaaaaaaatgtggtcacacaaaccatatattatattaactaaaatttttcagaatggtacaaaaggatgtacacattaaag 7706777  T
Q  300 gtgtctatcaatctttatt 318  Q
    |||| ||||||||||||||    
T  7706776 gtgtttatcaatctttatt 7706758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 201 - 306
Target Start/End: Original strand, 2835060 - 2835165
Alignment:
Q  201 aaatagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaaggg 300  Q
    |||||||||| | |||||| ||||||| ||||||||||||   ||||||| |||| || |||||||  ||||||||| ||| |||| ||||||||||||     
T  2835060 aaatagtggttacacaactaaaaaaatgtggtcacacagatggtatatttggttaacttaaatttttcagagtggtacaaattgatatacacattaaggc 2835159  T
Q  301 tgtcta 306  Q
    ||||||    
T  2835160 tgtcta 2835165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 304
Target Start/End: Original strand, 24386337 - 24386412
Alignment:
Q  229 tggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtc 304  Q
    |||||||||||||||||||||| |||| || |||||||  || ||||||||||  ||| |||||||||||||||||    
T  24386337 tggtcacacagaccatatatttggttaacttaaatttttcagcgtggtataaagggatgtacacattaagggtgtc 24386412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 201 - 306
Target Start/End: Complemental strand, 2430618 - 2430513
Alignment:
Q  201 aaatagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcg-agagtggtataaaatgatctacacattaagg 299  Q
    ||||||||||||| ||||| |||||| | ||||||||||| |||||||||||||| ||||||||||   ||| ||||| |||   || ||||||||||||    
T  2430618 aaatagtggtcatgcaactaaaaaaaat-ggtcacacagatcatatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagg 2430520  T
Q  300 gtgtcta 306  Q
    |||||||    
T  2430519 gtgtcta 2430513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 201 - 297
Target Start/End: Original strand, 9068503 - 9068599
Alignment:
Q  201 aaatagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaa 297  Q
    ||||||||||||  ||||| ||||||| |||||||||| |||||||||||  ||| || |||||||  ||||||||| |||| | | ||||||||||    
T  9068503 aaatagtggtcacgcaactaaaaaaatgtggtcacacataccatatatttgattaactaaaatttttcagagtggtacaaaagggtgtacacattaa 9068599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 255
Target Start/End: Original strand, 2430650 - 2430704
Alignment:
Q  201 aaatagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagtta 255  Q
    ||||||||||||  ||||||||||||| |||||||||| ||||||||||| ||||    
T  2430650 aaatagtggtcacgcaactgaaaaaatgtggtcacacaaaccatatatttggtta 2430704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 164
Target Start/End: Complemental strand, 7706913 - 7706863
Alignment:
Q  114 ctatttttccagaatttatttggttaactaaatggaaaaatagtggtcacg 164  Q
    |||||||||||||| |||||||||||  ||| |||||||||||||||||||    
T  7706913 ctatttttccagaacttatttggttacttaagtggaaaaatagtggtcacg 7706863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 281
Target Start/End: Complemental strand, 9068394 - 9068329
Alignment:
Q  215 caactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaa 281  Q
    ||||||||||| | |||||| |||||||||||| || |||| |||| ||||||||||||||||||||    
T  9068394 caactgaaaaa-tgtggtcatacagaccatatacttggttaactgatattttcgagagtggtataaa 9068329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 201 - 250
Target Start/End: Original strand, 15341858 - 15341907
Alignment:
Q  201 aaatagtggtcatacaactgaaaaaatttggtcacacagaccatatattt 250  Q
    |||||||||||| ||| || ||||||| ||||||||||||||||||||||    
T  15341858 aaatagtggtcacacaccttaaaaaatgtggtcacacagaccatatattt 15341907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 281
Target Start/End: Complemental strand, 138726 - 138646
Alignment:
Q  201 aaatagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaa 281  Q
    ||||||||||||  ||||| | ||||| ||| |||||||||||||||||| |||| || || ||||  |||||||||||||    
T  138726 aaatagtggtcacgcaactaagaaaatgtggccacacagaccatatatttggttaactaaatttttttagagtggtataaa 138646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 281
Target Start/End: Complemental strand, 146747 - 146667
Alignment:
Q  201 aaatagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaa 281  Q
    ||||||||||||  ||||| | ||||| ||| |||||||||||||||||| |||| || || ||||  |||||||||||||    
T  146747 aaatagtggtcacgcaactaagaaaatgtggccacacagaccatatatttggttaactaaatttttttagagtggtataaa 146667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 277
Target Start/End: Complemental strand, 10304684 - 10304636
Alignment:
Q  229 tggtcacacagaccatatatttagttacctgaaattttcgagagtggta 277  Q
    |||||||||||||||||||||| |||| ||||||||||  |||||||||    
T  10304684 tggtcacacagaccatatatttggttaactgaaattttttagagtggta 10304636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 304
Target Start/End: Complemental strand, 20084664 - 20084589
Alignment:
Q  229 tggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtc 304  Q
    |||||||||| ||||||||||| |||| || |||||||  ||  |||||||||  ||| |||||||||||||||||    
T  20084664 tggtcacacataccatatatttggttaacttaaatttttcagcatggtataaagggatgtacacattaagggtgtc 20084589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 308
Target Start/End: Original strand, 7915696 - 7915798
Alignment:
Q  206 gtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtct 305  Q
    |||||||  ||||| ||||| | ||||||||||||| ||||||||  ||| ||||||||||  ||||||||| || | | | |||||||||||  |||||    
T  7915696 gtggtcacgcaactaaaaaattgtggtcacacagacgatatatttgattaactgaaatttttcagagtggtaaaagagggtgtacacattaagaatgtct 7915795  T
Q  306 atc 308  Q
    |||    
T  7915796 atc 7915798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 266
Target Start/End: Complemental strand, 30056117 - 30056072
Alignment:
Q  221 aaaaaatttggtcacacagaccatatatttagttacctgaaatttt 266  Q
    ||||||| |||||||| ||||||||||||| |||| ||||||||||    
T  30056117 aaaaaatgtggtcacatagaccatatatttggttaactgaaatttt 30056072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 266
Target Start/End: Complemental strand, 11108160 - 11108116
Alignment:
Q  222 aaaaatttggtcacacagaccatatatttagttacctgaaatttt 266  Q
    |||||| |||||||||||||||||||||| ||||  |||||||||    
T  11108160 aaaaatgtggtcacacagaccatatatttggttaattgaaatttt 11108116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 117 - 312
Target Start/End: Complemental strand, 34490287 - 34490094
Alignment:
Q  117 tttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcataca 216  Q
    ||||| |||||||||||||||||||||| | ||||||||||||||| | |||||||| |||| ||||||||||||| |||||||||||||||||||||||    
T  34490287 ttttttcagaatttatttggttaactaactagaaaaatagtggtcatgcgcatttta-ttgcatgaccacattttttagcttctaaatagtggtcataca 34490189  T
Q  217 actgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatc 312  Q
    ||||||||||| || |||||||||||||||||||||||| ||||||||||  | |||||||  ||| ||| ||||||||||||||||||| |||||    
T  34490188 actgaaaaaatgtg-tcacacagaccatatatttagttaactgaaattttacatagtggtaccaaaagatatacacattaagggtgtctaccaatc 34490094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 115 - 319
Target Start/End: Complemental strand, 34364333 - 34364131
Alignment:
Q  115 tatttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcata 214  Q
    |||||||||||||||| ||||||||||||| || |||||| |||||||||| ||||||||||| |||||||||| |||||||||||||||| ||| ||      
T  34364333 tatttttccagaatttttttggttaactaagtgaaaaaattgtggtcacgttcattttagttgtgtgaccacatgtttcagcttctaaata-tggccacg 34364235  T
Q  215 caactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatctt 314  Q
    |||||| |||||| ||||||||||||||||||||||||||| || |||||||| ||||||||| |||  ||| | || ||||| |||||| | | |||||    
T  34364234 caactg-aaaaatatggtcacacagaccatatatttagttaacttaaattttccagagtggtacaaatagatgtgcatattaatggtgtcaacctatctt 34364136  T
Q  315 tattc 319  Q
    |||||    
T  34364135 tattc 34364131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 114 - 225
Target Start/End: Original strand, 29677091 - 29677202
Alignment:
Q  114 ctatttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcat 213  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||     
T  29677091 ctattttttcagaatttatttggttaactaagtggaaaaatagtggtcacgcacattttagttgcgtgaccacatttttcagcttctaaatagtggtcac 29677190  T
Q  214 acaactgaaaaa 225  Q
     |||||||||||    
T  29677191 tcaactgaaaaa 29677202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 63 - 243
Target Start/End: Complemental strand, 42604372 - 42604192
Alignment:
Q  63 gttaaccaaatatatggtttgtgtgatcacannnnnnnaattgcgtgatccctatttttccagaatttatttggttaactaaatggaaaaatagtggtca 162  Q
    ||||| |||||||||||||||||||| ||||       | ||| |||||| |||||||| |||||||||||| ||||||||| |||||||||||||||||    
T  42604372 gttaatcaaatatatggtttgtgtgaccacattgttttagttgtgtgatcactattttttcagaatttatttcgttaactaagtggaaaaatagtggtca 42604273  T
Q  163 cgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcatacaactgaaaaaatttggtcacacagacca 243  Q
    || ||||||||||||  |||||| | |||| ||||||||||||||||| || ||||||||||||| |||||||||| ||||    
T  42604272 cgcgcattttagttgtatgaccatacttttaagcttctaaatagtggtgatgcaactgaaaaaatgtggtcacacatacca 42604192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 118 - 255
Target Start/End: Complemental strand, 25238575 - 25238439
Alignment:
Q  118 ttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcatacaa 217  Q
    |||| |||||||||||||||||||||| ||||||||||||||| |||  ||||||| || ||||||||||||||| |||||||||||||||||||  |||    
T  25238575 tttttcagaatttatttggttaactaagtggaaaaatagtggttacgcacatttta-ttacgtgaccacattttttagcttctaaatagtggtcacgcaa 25238477  T
Q  218 ctgaaaaaatttggtcacacagaccatatatttagtta 255  Q
    ||||||||||||| ||| | ||||||||||||||||||    
T  25238476 ctgaaaaaatttgatcatatagaccatatatttagtta 25238439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 61 - 242
Target Start/End: Original strand, 29167764 - 29167943
Alignment:
Q  61 cagttaaccaaatatatggtttgtgtgatcacannnnnnnaattgcgtgatccctatttttccagaatttatttggttaactaaatggaaaaatagtggt 160  Q
    |||||||| ||||||||||||||||||| ||||       | |||| ||| | ||| |||| | |||||||||||||||||||| |||||||||||||||    
T  29167764 cagttaactaaatatatggtttgtgtgaccacatttttt-agttgcctgaccactagtttttcggaatttatttggttaactaagtggaaaaatagtggt 29167862  T
Q  161 cacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcatacaactgaaaaaatttggtcacacagacc 242  Q
    || | |||||||| ||||||||||| |||||| |||||||||||||||||||  ||||||||||||| || | |||||||||    
T  29167863 catgcgcatttta-ttgcgtgaccatattttttagcttctaaatagtggtcacgcaactgaaaaaatgtgattacacagacc 29167943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 64 - 319
Target Start/End: Complemental strand, 5831685 - 5831431
Alignment:
Q  64 ttaaccaaatatatggtttgtgtgatcacannnnnnnaattgcgtgatccctatttttccagaatttatttggttaactaaatggaaaaatagtggtcac 163  Q
    ||||||||||||||||| ||||||| || |       | |||||||| | ||| ||||||||||||||||||||||||||| ||||||||| ||||| |     
T  5831685 ttaaccaaatatatggtctgtgtgaccatatttttttagttgcgtgaccactaattttccagaatttatttggttaactaagtggaaaaattgtggtaat 5831586  T
Q  164 gtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaat 263  Q
      ||||||||||| || ||||| |||||| | |||||||||||||||||| ||||  | ||||| || ||||||| ||||||| |||||||| || ||||    
T  5831585 acgcattttagttacgggaccatattttttaacttctaaatagtggtcatgcaacaaacaaaatatgatcacacataccatatctttagttaactaaaat 5831486  T
Q  264 tttcgagagtggtataaaatgatctacacattaagggtgtctatcaatctttattc 319  Q
    |||  ||| || || |||| | | ||| ||||||  ||||||| ||||||||||||    
T  5831485 ttttcagaatgttacaaaagggtgtactcattaa-agtgtctaccaatctttattc 5831431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 127 - 262
Target Start/End: Complemental strand, 9468199 - 9468064
Alignment:
Q  127 atttatttggttaactaaatgg-aaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcatacaactgaaaaa 225  Q
    |||||||||||||||||| ||| ||||||||| ||||| | ||||||||||| |||| |||||||| |||||| |||||| |||||| ||||||||||||    
T  9468199 atttatttggttaactaagtggcaaaaatagtagtcacatacattttagttgtgtgatcacattttacagcttttaaata-tggtcagacaactgaaaaa 9468101  T
Q  226 atttggtcacacagaccatatatttagttacctgaaa 262  Q
    || |||||||||| ||||||||||| |||| ||||||    
T  9468100 atatggtcacacataccatatatttggttaactgaaa 9468064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 114 - 277
Target Start/End: Complemental strand, 38952010 - 38951844
Alignment:
Q  114 ctatttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccaca--tttttcagcttctaaatagtggtc 211  Q
    |||||| |||| ||||||||||||||||||| | |||||||||||||||   |||||||||||||||||| | |  |||||||| |||||||||||||||    
T  38952010 ctatttctccaaaatttatttggttaactaagtagaaaaatagtggtcagacgcattttagttgcgtgactatatttttttcagtttctaaatagtggtc 38951911  T
Q  212 atacaactg-aaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggta 277  Q
    |  || ||| ||||||| ||||  || ||||||||||||| |||| || ||||||||||||||||||    
T  38951910 acgcagctgaaaaaaatgtggtttcatagaccatatatttggttaacttaaattttcgagagtggta 38951844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 128 - 316
Target Start/End: Original strand, 517433 - 517623
Alignment:
Q  128 tttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcatacaactgaaaaaat 227  Q
    ||||||||||||||||| |  ||||||||| |||| || |||||||||||||||| || |||||| | ||||||||||||||| |  ||| || ||||||    
T  517433 tttatttggttaactaagttaaaaaatagtagtcatgttcattttagttgcgtgatcatattttttaacttctaaatagtggttacgcaattg-aaaaat 517531  T
Q  228 ttggtcacacagaccatatatttagttacctgaaattttcgagagtggtata---aaatgatctacacattaagggtgtctatcaatcttta 316  Q
     ||||  |||| | ||||||||| |||| || ||||||| ||||||| || |   ||||||| |||||||||||| |||||||| |||||||    
T  517532 gtggttgcacatatcatatatttggttaacttaaatttttgagagtgatacaaataaatgatgtacacattaaggatgtctatcgatcttta 517623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 128 - 204
Target Start/End: Complemental strand, 2996101 - 2996025
Alignment:
Q  128 tttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaat 204  Q
    |||||||||||||||||  |||||||||| || |||| |||||||| ||||||||||||||||||||||||||||||    
T  2996101 tttatttggttaactaagcggaaaaatagcggccacgcgcattttatttgcgtgaccacatttttcagcttctaaat 2996025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 127 - 319
Target Start/End: Complemental strand, 5855205 - 5855005
Alignment:
Q  127 atttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaata-----------gtggtcatac 215  Q
    |||||||||||||| |||||||||||||||  |||||||  |||||||||| |||||||||| ||| ||||| |||||            ||||||| ||    
T  5855205 atttatttggttaattaaatggaaaaatagacgtcacgt--attttagttgtgtgaccacatattttagcttttaaatgttggaaaaattgtggtcacac 5855108  T
Q  216 aactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatcttt 315  Q
    ||||||||| || |||||||||||||||||||||| |||| ||||||||||  | ||| ||| |||  ||| || |||||||| ||||||| | ||||||    
T  5855107 aactgaaaatatgtggtcacacagaccatatatttggttagctgaaatttttca-agtagtacaaagggatgtaaacattaagcgtgtctacctatcttt 5855009  T
Q  316 attc 319  Q
    ||||    
T  5855008 attc 5855005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 201 - 306
Target Start/End: Complemental strand, 13350999 - 13350894
Alignment:
Q  201 aaatagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaaggg 300  Q
    ||||||| | ||| ||||||||||||  || ||||||| ||||||||||| |||| ||||||||||||||||||||| |||| | | ||||||||||||     
T  13350999 aaatagtagccatgcaactgaaaaaacgtgatcacacataccatatatttggttaactgaaattttcgagagtggtacaaaagggtgtacacattaagga 13350900  T
Q  301 tgtcta 306  Q
    ||||||    
T  13350899 tgtcta 13350894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 204 - 306
Target Start/End: Original strand, 34490289 - 34490391
Alignment:
Q  204 tagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgt 303  Q
    |||||||||  ||||| ||||||| |||||||||||||||||||||| || | ||||||||||  ||||||||| ||| || | ||||||||||| ||||    
T  34490289 tagtggtcacgcaactaaaaaaatgtggtcacacagaccatatattttgtaaactgaaatttttcagagtggtacaaagtggtgtacacattaagagtgt 34490388  T
Q  304 cta 306  Q
    |||    
T  34490389 cta 34490391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 103 - 164
Target Start/End: Complemental strand, 2570022 - 2569961
Alignment:
Q  103 ttgcgtgatccctatttttccagaatttatttggttaactaaatggaaaaatagtggtcacg 164  Q
    |||||||| | ||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  2570022 ttgcgtgaccactatttttctagaatttatttggttaactaagtggaaaaatagtggtcacg 2569961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 266
Target Start/End: Original strand, 9929836 - 9929935
Alignment:
Q  166 gcattttagttgcgtgaccacat-ttttcagcttctaaatagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaatt 264  Q
    ||||||||||||||||||||||| ||||| |     ||||||||||||  ||| ||||||||| |||||||||||||||||||||||||||  |||||||    
T  9929836 gcattttagttgcgtgaccacatattttctgaaa--aaatagtggtcacgcaaatgaaaaaatgtggtcacacagaccatatatttagttaattgaaatt 9929933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 62 - 155
Target Start/End: Original strand, 9929685 - 9929778
Alignment:
Q  62 agttaaccaaatatatggtttgtgtgatcacannnnnnnaattgcgtgatccctatttttccagaatttatttggttaactaaatggaaaaata 155  Q
    ||||||||||||||||||||||| ||| ||||       | ||||| || |  ||||||| || ||||||||||||||||||||||||||||||    
T  9929685 agttaaccaaatatatggtttgtatgaccacattattttagttgcgcgaccgatattttttcaaaatttatttggttaactaaatggaaaaata 9929778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 250
Target Start/End: Original strand, 38244801 - 38244848
Alignment:
Q  203 atagtggtcatacaactgaaaaaatttggtcacacagaccatatattt 250  Q
    ||||||||||  ||||||||||||| ||||||||||||||||||||||    
T  38244801 atagtggtcacgcaactgaaaaaatgtggtcacacagaccatatattt 38244848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 266
Target Start/End: Original strand, 5831633 - 5831695
Alignment:
Q  204 tagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaatttt 266  Q
    |||||||||  ||||| ||||||| |||||||||||||||||||||| ||||  |||||||||    
T  5831633 tagtggtcacgcaactaaaaaaatatggtcacacagaccatatatttggttaattgaaatttt 5831695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 266
Target Start/End: Complemental strand, 29167818 - 29167757
Alignment:
Q  204 tagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaatttt 266  Q
    |||||||||  ||||| ||||||| |||||||||| |||||||||||||||| ||||||||||    
T  29167818 tagtggtcaggcaact-aaaaaatgtggtcacacaaaccatatatttagttaactgaaatttt 29167757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 201 - 266
Target Start/End: Complemental strand, 29677096 - 29677032
Alignment:
Q  201 aaatagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaatttt 266  Q
    ||||||||||||| ||||| ||||||| ||||||||||| |||||||||| |||| || |||||||    
T  29677096 aaatagtggtcatgcaact-aaaaaatgtggtcacacaggccatatatttggttaactaaaatttt 29677032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 282
Target Start/End: Original strand, 5855201 - 5855283
Alignment:
Q  200 taaatagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaa 282  Q
    |||||||||||||  ||||| |  |||| |||||||||| ||||||||||| |||| || |||||||  ||||||||| ||||    
T  5855201 taaatagtggtcacgcaactaactaaatgtggtcacacataccatatatttggttaacttaaatttttcagagtggtacaaaa 5855283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 250
Target Start/End: Complemental strand, 24708123 - 24708074
Alignment:
Q  201 aaatagtggtcatacaactgaaaaaatttggtcacacagaccatatattt 250  Q
    ||||||||||||  || || ||||||| ||||||||||||||||||||||    
T  24708123 aaatagtggtcacgcaccttaaaaaatgtggtcacacagaccatatattt 24708074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 266
Target Start/End: Original strand, 38952005 - 38952070
Alignment:
Q  201 aaatagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaatttt 266  Q
    ||||||||||||  ||||| ||||||| |||||||| | |||||| |||| |||| ||||||||||    
T  38952005 aaatagtggtcaagcaactaaaaaaatatggtcacatataccatacattttgttaactgaaatttt 38952070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 277
Target Start/End: Original strand, 2570006 - 2570082
Alignment:
Q  201 aaatagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggta 277  Q
    ||||||||||||  ||||| ||||||| |||| ||||| |||||||| || |||| || |||||||| |||| ||||    
T  2570006 aaatagtggtcacgcaactcaaaaaatatggtaacacaaaccatatacttggttaacttaaattttccagagcggta 2570082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 250
Target Start/End: Complemental strand, 17227548 - 17227500
Alignment:
Q  202 aatagtggtcatacaactgaaaaaatttggtcacacagaccatatattt 250  Q
    |||||||||||  || || ||||||| ||||||||||||||||||||||    
T  17227548 aatagtggtcacgcaccttaaaaaatgtggtcacacagaccatatattt 17227500  T

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Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 297
Target Start/End: Original strand, 28499644 - 28499720
Alignment:
Q  221 aaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaa 297  Q
    ||||||| ||||||  | |||||||||||| |||| ||||||||||  ||| ||||| |||||||| ||||| ||||    
T  28499644 aaaaaatgtggtcatccggaccatatatttggttaactgaaattttttagaatggtacaaaatgatgtacacgttaa 28499720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 109; Significance: 8e-55; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 61 - 318
Target Start/End: Complemental strand, 13312754 - 13312498
Alignment:
Q  61 cagttaaccaaatatatggtttgtgtgatcacannnnnnnaattgcgtgatccctatttttccagaatttatttggttaactaaatggaaaaatagtggt 160  Q
    |||||||||| ||||||| ||||||||| ||||       | |||||||| | ||||||||||| ||||||||||||||||||| |||||||||||| |     
T  13312754 cagttaaccatatatatgatttgtgtgaccacatttttttagttgcgtgaccactatttttccataatttatttggttaactaagtggaaaaatagttgc 13312655  T
Q  161 cacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctga 260  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||||  ||||||| ||||| || ||||| ||||||||||||| ||||  |||    
T  13312654 cacgcgcattttagttgcgtgaccacatttttcagcttctaaatagcggtcacccaactga-aaaatgtgttcacatagaccatatatttggttaattga 13312556  T
Q  261 aattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatctttatt 318  Q
    ||||||||| | | ||| |||| | | |||||||||| ||| |||| |||||||||||    
T  13312555 aattttcgaaaatagtacaaaagggtgtacacattaaaggtatctaccaatctttatt 13312498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 115 - 313
Target Start/End: Complemental strand, 22169559 - 22169361
Alignment:
Q  115 tatttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcata 214  Q
    ||||||| || ||||||||||||||||||  | ||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||      
T  22169559 tattttttcaaaatttatttggttaactacgttgaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcaacttataaatagtggtcacg 22169460  T
Q  215 caactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatct 313  Q
    ||||||||||||| || ||||| |  ||||||||||||||| ||||||||||| | | || || || | | | ||||||||||||||||||| ||||||    
T  22169459 caactgaaaaaatgtgatcacatattccatatatttagttaactgaaattttcaaaaatgatacaatagggtgtacacattaagggtgtctaccaatct 22169361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 114 - 320
Target Start/End: Original strand, 43461707 - 43461912
Alignment:
Q  114 ctatttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcat 213  Q
    |||||||| |||||||||||||||| ||||| ||||||||||||||| ||||| |||||||||||||||||  |||||||| |||||||||||||||||     
T  43461707 ctattttttcagaatttatttggtttactaagtggaaaaatagtggttacgtgaattttagttgcgtgaccgtatttttcaacttctaaatagtggtcac 43461806  T
Q  214 acaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatct 313  Q
    |||||||||||||| ||||| || |||||||||||||  ||| ||||||||||| | |||| || |||  | |  |||||||||| ||||||| | ||||    
T  43461807 acaactgaaaaaatatggtc-caaagaccatatatttgattaactgaaattttcaaaagtgctacaaaggggtacacacattaagagtgtctacctatct 43461905  T
Q  314 ttattct 320  Q
    |||||||    
T  43461906 ttattct 43461912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 116 - 318
Target Start/End: Original strand, 33958988 - 33959189
Alignment:
Q  116 atttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcatac 215  Q
    |||||||||||||||||||||| |||||| ||||||||||||||| ||  | |||||||||||||||||| ||||||||| ||||||||||||||||  |    
T  33958988 atttttccagaatttatttggtcaactaagtggaaaaatagtggttactcggattttagttgcgtgaccatatttttcagtttctaaatagtggtcacgc 33959087  T
Q  216 aactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatcttt 315  Q
    | |||||||||| |  ||||| |||  |||||||| |||| ||||| ||||||||| |||||||||   || |||||||||||||||||||  |||||||    
T  33959088 agctgaaaaaatgtaatcacataga-tatatattttgttaactgaagttttcgagaatggtataaaggaatatacacattaagggtgtctactaatcttt 33959186  T
Q  316 att 318  Q
    |||    
T  33959187 att 33959189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 114 - 320
Target Start/End: Complemental strand, 31189680 - 31189473
Alignment:
Q  114 ctatttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcat 213  Q
    |||| ||||||||||||||||| ||||| || ||||||| ||||||||||   |||||||||||||||| ||||||||||||||||||||||||  ||||    
T  31189680 ctatgtttccagaatttatttgattaaccaagtggaaaa-tagtggtcacaaacattttagttgcgtgatcacatttttcagcttctaaatagtaatcat 31189582  T
Q  214 acaactgaa--aaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaat 311  Q
     ||| || |  ||||| |||||||||| || |||||||| |||| ||||||||||||||||||||| |||||| | |||| ||||| |||||||  ||||    
T  31189581 gcaattggacaaaaatgtggtcacacatactatatatttggttaactgaaattttcgagagtggtacaaaatgttgtacatattaaaggtgtctgccaat 31189482  T
Q  312 ctttattct 320  Q
    |||||||||    
T  31189481 ctttattct 31189473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 114 - 227
Target Start/End: Complemental strand, 35922835 - 35922722
Alignment:
Q  114 ctatttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcat 213  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||     
T  35922835 ctattttttcagaatttatttggttaactaaatggaaaaatagtggtcatacgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcac 35922736  T
Q  214 acaactgaaaaaat 227  Q
     |||||||||||||    
T  35922735 gcaactgaaaaaat 35922722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 118 - 255
Target Start/End: Original strand, 38521978 - 38522114
Alignment:
Q  118 ttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcatacaa 217  Q
    ||||| ||||||||||| ||||||||| || |||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||| |||    
T  38521978 ttttctagaatttatttagttaactaagtgtaaaaatagtggtcacgcgcatttta-tcgcgtgaccacatttttcagcttctaaatagtggtcatgcaa 38522076  T
Q  218 ctgaaaaaatttggtcacacagaccatatatttagtta 255  Q
     ||||||||| |||||||| ||||||||||||| ||||    
T  38522077 ttgaaaaaatgtggtcacatagaccatatatttggtta 38522114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 69 - 202
Target Start/End: Complemental strand, 42034904 - 42034771
Alignment:
Q  69 caaatatatggtttgtgtgatcacannnnnnnaattgcgtgatccctatttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgca 168  Q
    |||||||||||| ||||| ||||||       | |||||||| | ||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  42034904 caaatatatggtatgtgtaatcacatttttttagttgcgtgaccactagttttccaaaatttatttggttaactaagtggaaaaatagtggtcacgtgca 42034805  T
Q  169 ttttagttgcgtgaccacatttttcagcttctaa 202  Q
    ||||||||||||||||||||||||||||||||||    
T  42034804 ttttagttgcgtgaccacatttttcagcttctaa 42034771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 169 - 320
Target Start/End: Original strand, 36169394 - 36169544
Alignment:
Q  169 ttttagttgcgtgaccacatttttcagcttctaaatagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcg 268  Q
    ||||||||||||||||| ||||||||||||||||||||||||||  ||||||||| ||| |||||||||| |||||||||||  | | |||||||||| |    
T  36169394 ttttagttgcgtgaccatatttttcagcttctaaatagtggtcacgcaactgaaagaatgtggtcacacataccatatatttgatcagctgaaatttttg 36169493  T
Q  269 agagtggtataaaatgatctacacattaagggtgtctatcaatctttattct 320  Q
    |||||||| ||||| ||| || ||||||| | |||||| |||||||||||||    
T  36169494 agagtggtgtaaaa-gatgtatacattaaagatgtctagcaatctttattct 36169544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 103 - 266
Target Start/End: Original strand, 19621468 - 19621630
Alignment:
Q  103 ttgcgtgatccctatttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttct-- 200  Q
    |||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||| ||||     ||||      
T  19621468 ttgcgtaatcactatttttccagaatttatttggttaactaagtggaaaaatagtggtcacgcacattttagttgcgtgaccacgtttt-----ttctgg 19621562  T
Q  201 --aaatagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaatttt 266  Q
      ||||||||||||  ||| || |||||| |||||||||| ||||||||||| |||| ||||||||||    
T  19621563 aaaaatagtggtcacgcaaatggaaaaatgtggtcacacataccatatatttggttaactgaaatttt 19621630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 130 - 319
Target Start/End: Original strand, 43262708 - 43262911
Alignment:
Q  130 tatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacattt---ttcagcttct-----------aaatagtggtcatac 215  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||   |||||||| |           ||||||| |||| |     
T  43262708 tatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgtgaccacatttttcttcagcttttaaatgttggaaaaatagtagtcacat 43262807  T
Q  216 aactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatcttt 315  Q
    |||| || |||| |||||||||||||||||||||| |||| ||||||||||  | ||| ||| |||  | | |||||||||||||||||||   ||||||    
T  43262808 aactaaacaaatgtggtcacacagaccatatatttggttaactgaaatttttcaaagtagtacaaaggggtgtacacattaagggtgtctacttatcttt 43262907  T
Q  316 attc 319  Q
    ||||    
T  43262908 attc 43262911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 127 - 297
Target Start/End: Complemental strand, 7156182 - 7156000
Alignment:
Q  127 atttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttct------------aaatagtggtcata 214  Q
    |||||||||||||| ||| |||||||||| ||||||||   |||||||||||| || |||||||||||||||||            ||||||||||||||    
T  7156182 atttatttggttaattaagtggaaaaataatggtcacgcatattttagttgcgcgatcacatttttcagcttctaaattctgaaaaaaatagtggtcata 7156083  T
Q  215 caactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaa 297  Q
     |||||||||||| || ||| | | |||||||||||  ||| ||||||||||| | ||||||| |||| ||| ||||||||||    
T  7156082 taactgaaaaaatgtgatcatataaaccatatatttgattaactgaaattttctaaagtggtacaaaaagatgtacacattaa 7156000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 127 - 204
Target Start/End: Original strand, 30704398 - 30704476
Alignment:
Q  127 atttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccaca-tttttcagcttctaaat 204  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||| | ||||||| ||||||||||| |||||    
T  30704398 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 30704476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 201 - 266
Target Start/End: Original strand, 15221662 - 15221727
Alignment:
Q  201 aaatagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaatttt 266  Q
    |||||||||||| |||| | ||||||| ||||||||||||||||||||||||||| ||||||||||    
T  15221662 aaatagtggtcacacaattaaaaaaatgtggtcacacagaccatatatttagttaactgaaatttt 15221727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 125 - 180
Target Start/End: Complemental strand, 30045940 - 30045885
Alignment:
Q  125 gaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgt 180  Q
    |||||||||||||||| ||||||||||||||||||||||| | |||||||||||||    
T  30045940 gaatttatttggttaattaaatggaaaaatagtggtcacgcgtattttagttgcgt 30045885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 163
Target Start/End: Complemental strand, 15221720 - 15221618
Alignment:
Q  61 cagttaaccaaatatatggtttgtgtgatcacannnnnnnaattgcgtgatccctatttttccagaatttatttggttaactaaatggaaaaatagtggt 160  Q
    |||||||| ||||||||||| ||||||| ||||       ||||| |||| | |||||||| |||||||||||| ||||| ||| |||||||| ||||||    
T  15221720 cagttaactaaatatatggtctgtgtgaccacatttttttaattgtgtgaccactattttttcagaatttatttagttaattaagtggaaaaagagtggt 15221621  T
Q  161 cac 163  Q
    |||    
T  15221620 cac 15221618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 318
Target Start/End: Complemental strand, 35922704 - 35922607
Alignment:
Q  221 aaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatctttatt 318  Q
    ||||||| |||||||||| |||||||||||  ||| ||||||||||  |||||| || |||  ||| ||||||||||| ||||||| | |||||||||    
T  35922704 aaaaaatgtggtcacacataccatatatttgattaactgaaatttttcagagtgatacaaagggatgtacacattaagtgtgtctaccgatctttatt 35922607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 201 - 306
Target Start/End: Original strand, 13312696 - 13312797
Alignment:
Q  201 aaatagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaaggg 300  Q
    ||||||||||||  ||||| ||||||| |||||||||| | ||||||| | |||| ||||||||||  ||||||||| ||||     |||||||||||||    
T  13312696 aaatagtggtcacgcaactaaaaaaatgtggtcacacaaatcatatatatggttaactgaaatttttcagagtggtacaaaa----gtacacattaaggg 13312791  T
Q  301 tgtcta 306  Q
    ||||||    
T  13312792 tgtcta 13312797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 114 - 169
Target Start/End: Complemental strand, 2477357 - 2477302
Alignment:
Q  114 ctatttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcat 169  Q
    |||||||| |||||||||||||||||||||| | |||||||||||| |||| ||||    
T  2477357 ctatttttacagaatttatttggttaactaagtcgaaaaatagtggccacgcgcat 2477302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 201 - 266
Target Start/End: Original strand, 35922830 - 35922895
Alignment:
Q  201 aaatagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaatttt 266  Q
    ||||||||||||| ||||| ||||||| ||||| ||||||||||| |||| |||| || |||||||    
T  35922830 aaatagtggtcatgcaacttaaaaaatatggtcccacagaccataaatttggttaacttaaatttt 35922895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 7156178 - 7156226
Alignment:
Q  200 taaatagtggtcatacaactgaaaaaatttggtcacacagaccatatat 248  Q
    ||||||||||||| |||||| ||||||| ||||||||| ||||||||||    
T  7156178 taaatagtggtcacacaactaaaaaaatgtggtcacacggaccatatat 7156226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 306
Target Start/End: Complemental strand, 33958991 - 33958887
Alignment:
Q  201 aaatagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaaggg 300  Q
    |||| |||||||| || || ||||||| || | ||| ||||||||||||| ||||  |||||||||  |||||||||  ||| ||| |||| ||||||||    
T  33958991 aaattgtggtcatgcagctaaaaaaatgtgattacatagaccatatatttggttaagtgaaatttttcagagtggta-caaaggatatacatattaaggg 33958893  T
Q  301 tgtcta 306  Q
    ||||||    
T  33958892 tgtcta 33958887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 277
Target Start/End: Complemental strand, 15221624 - 15221576
Alignment:
Q  229 tggtcacacagaccatatatttagttacctgaaattttcgagagtggta 277  Q
    |||||||||| ||||||||||| |||| || |||||||||||| |||||    
T  15221624 tggtcacacaaaccatatatttggttaactaaaattttcgagaatggta 15221576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1126 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold1126
Description:

Target: scaffold1126; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 61 - 320
Target Start/End: Original strand, 162 - 421
Alignment:
Q  61 cagttaaccaaatatatggtttgtgtgatcacannnnnnnaattgcgtgatccctatttttccagaatttatttggttaactaaatggaaaaatagtggt 160  Q
    |||||||||||||||||||  ||||||||||||       | |||||||| | ||| |||| || || |||||||| ||| ||| |||||||||||||||    
T  162 cagttaaccaaatatatggactgtgtgatcacattgttttagttgcgtgaccactaatttttcaaaaattatttggataagtaagtggaaaaatagtggt 261  T
Q  161 cacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctga 260  Q
    || | |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| | ||| |||||||||||||||||| |||| ||||    
T  262 catgcgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcacgcaactgaaaaagtgtggccacacagaccatatatttggttaactga 361  T
Q  261 aattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatctttattct 320  Q
    || |||  ||||||||| |||  ||| |||| ||||||||||| || |||| ||| ||||    
T  362 aaattttcagagtggtacaaagagatgtacaaattaagggtgtttaccaatttttgttct 421  T

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Target: scaffold0251 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 115 - 318
Target Start/End: Original strand, 10622 - 10825
Alignment:
Q  115 tatttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcata 214  Q
    |||||||  ||||||||||||||||||||| |||||||||| |||||||| | ||||||||||||||||||||||||| |  || ||||||||||||||     
T  10622 tattttttgagaatttatttggttaactaagtggaaaaataatggtcacgggtattttagttgcgtgaccacattttttattttttaaatagtggtcatg 10721  T
Q  215 caactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaagggtgtctatcaatctt 314  Q
    ||||| ||||||| | |||||  ||||||||||||| ||||  |||||||||| ||||||||| |||   || |||| ||||||| ||| || | |||||    
T  10722 caacttaaaaaatatagtcacctagaccatatatttggttaattgaaattttctagagtggtacaaaggaatgtacatattaaggatgtttacctatctt 10821  T
Q  315 tatt 318  Q
    ||||    
T  10822 tatt 10825  T

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Target: scaffold0123 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 118 - 241
Target Start/End: Original strand, 24031 - 24153
Alignment:
Q  118 ttttccagaatttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcatacaa 217  Q
    |||| ||||||||||||||| || ||| ||||||||||||||||||| |||||||| | |||| ||||||||||| |||||||||||||||||||| |||    
T  24031 tttttcagaatttatttggtaaaataagtggaaaaatagtggtcacgcgcattttaat-gcgtaaccacattttttagcttctaaatagtggtcatgcaa 24129  T
Q  218 ctgaaaaaatttggtcacacagac 241  Q
    |||||||||| | |||||| ||||    
T  24130 ctgaaaaaatgtagtcacatagac 24153  T

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Target: scaffold0126 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 177 - 320
Target Start/End: Original strand, 21549 - 21690
Alignment:
Q  177 gcgtgaccacatttttcagcttctaaatagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggt 276  Q
    ||||||||||||||||||||||||| ||||||||||  ||||||||||||| |||||||||||||||||||||  |||| |||| |||||| | |||||     
T  21549 gcgtgaccacatttttcagcttctatatagtggtcacgcaactgaaaaaatgtggtcacacagaccatatattcggttaactgagattttctaaagtggc 21648  T
Q  277 ataaaatgatctacacattaagggtgtctatcaatctttattct 320  Q
    | |||    | |||||||||| |||||||| |||||||||||||    
T  21649 acaaa--cgtgtacacattaaaggtgtctaccaatctttattct 21690  T

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Target: scaffold0043 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 127 - 204
Target Start/End: Complemental strand, 87112 - 87035
Alignment:
Q  127 atttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaat 204  Q
    |||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  87112 atttatttggttaactaagtagaaaaatagtggtcacgtgtattttagttgcgtgaccacatttttcagtttctaaat 87035  T

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Target: scaffold0043; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 319
Target Start/End: Complemental strand, 86991 - 86873
Alignment:
Q  201 aaatagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttcgagagtggtataaaatgatctacacattaaggg 300  Q
    |||||||||||| ||||| |||||||| |||||||||| || ||||||||  |||  |||| ||||| ||| ||||| |||  | | |||||||||||      
T  86991 aaatagtggtcacacaaccgaaaaaatgtggtcacacaaactatatatttgattaattgaagttttctagaatggtagaaaggggtgtacacattaagaa 86892  T
Q  301 tgtctatcaatctttattc 319  Q
    ||| || ||||| ||||||    
T  86891 tgtttaccaatcattattc 86873  T

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Target: scaffold0024 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 127 - 204
Target Start/End: Complemental strand, 112235 - 112158
Alignment:
Q  127 atttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaat 204  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  112235 atttatttagttaactaagtggaaaaatagtggtcacgtgcattttaattgcgtgaccacgtttttcagcttctaaat 112158  T

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Target: scaffold0291 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 127 - 204
Target Start/End: Complemental strand, 5947 - 5870
Alignment:
Q  127 atttatttggttaactaaatggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaat 204  Q
    |||||||||||||| ||| || |||||||||||||||| | ||||||||||||  |||||| |||||||||| |||||    
T  5947 atttatttggttaattaagtgcaaaaatagtggtcacgcgtattttagttgcgacaccacacttttcagcttttaaat 5870  T

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Target: scaffold0213 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 265
Target Start/End: Original strand, 24932 - 24995
Alignment:
Q  202 aatagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattt 265  Q
    ||||||||||| ||||||||||| || ||||||||||||| |||||||| | || |||||||||    
T  24932 aatagtggtcacacaactgaaaacatgtggtcacacagactatatatttggctaactgaaattt 24995  T

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Target: scaffold0213; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 267
Target Start/End: Original strand, 25350 - 25416
Alignment:
Q  201 aaatagtggtcatacaactgaaaaaatttggtcacacagaccatatatttagttacctgaaattttc 267  Q
    |||||||||||||||||||  |||||| |||| | ||||||||||||||| |||| || ||||||||    
T  25350 aaatagtggtcatacaactttaaaaatgtggttatacagaccatatatttggttaactaaaattttc 25416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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