View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0613_low_20 (Length: 275)

Name: NF0613_low_20
Description: NF0613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0613_low_20
NF0613_low_20
[»] chr7 (1 HSPs)
chr7 (7-275)||(38832751-38833017)


Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 7 - 275
Target Start/End: Original strand, 38832751 - 38833017
Alignment:
Q  7 ggatcttcttcttgcatcatctctgttttctgatgcaattttcgtatttaaaacgacacaacttgttttcttttagcaaaaaacaacactacttgttatg 106  Q
    |||| ||||||||||||||||||||  || ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38832751 ggatgttcttcttgcatcatctctggattatgatgcattttttgtatttaaaacgacacaacttgttttcttttagcaaaaaacaacactacttgttatg 38832850  T
Q  107 aaagtaaaaaatggcaggtgatggcagaagaatgccctcaacgggacatggtcaaattcactagatcatatggtcctataataattataacagtggtgtt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||| ||    
T  38832851 aaagtaaaaaatggcaggtgatggcagaagaatgccctcaacgggacatggtcaaattcactagatcatatggtcc--taataattaaaacagtggtatt 38832948  T
Q  207 aatagcggtaatgttgacccaaaaaagaacgtaataggaatgagccgtgataaaggtttctagttcata 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38832949 aatagcggtaatgttgacccaaaaaagaacgtaataggaatgagccgtgataaaggtttctagttcata 38833017  T

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