View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0613_low_25 (Length: 228)

Name: NF0613_low_25
Description: NF0613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0613_low_25
NF0613_low_25
[»] chr3 (9 HSPs)
chr3 (87-227)||(28085679-28085819)
chr3 (110-228)||(27350768-27350886)
chr3 (107-227)||(26631365-26631485)
chr3 (108-225)||(27981071-27981190)
chr3 (90-228)||(28006595-28006733)
chr3 (87-215)||(27380668-27380796)
chr3 (141-227)||(26632200-26632286)
chr3 (141-228)||(27387921-27388008)
chr3 (141-227)||(19482351-19482437)
[»] scaffold0043 (3 HSPs)
scaffold0043 (87-228)||(50779-50920)
scaffold0043 (155-228)||(29314-29387)
scaffold0043 (155-228)||(44172-44245)
[»] chr5 (1 HSPs)
chr5 (147-228)||(6164258-6164339)
[»] chr2 (1 HSPs)
chr2 (141-228)||(22395627-22395714)
[»] scaffold1163 (1 HSPs)
scaffold1163 (155-225)||(1034-1104)


Alignment Details
Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 87 - 227
Target Start/End: Complemental strand, 28085819 - 28085679
Alignment:
Q  87 ctgttgccaactttctcaccagttcagcttctactacatcgacctccgtcgacacaagtgcagaaagtaattctttactttcgcgtgcccattcagtgca 186  Q
    |||||||||||||  ||||  |||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||   ||||||||||||||||    
T  28085819 ctgttgccaacttcatcacacgttcagcttctattacgtcgacctccgttgacacaagtgcagaaagtaattctttactttgctgtgcccattcagtgca 28085720  T
Q  187 ttcatccttcaacttctccttctgaacatcacatttgttca 227  Q
    |||| |||||||||| |||||||||||||||||||||||||    
T  28085719 ttcagccttcaacttttccttctgaacatcacatttgttca 28085679  T

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Target: chr3; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 110 - 228
Target Start/End: Complemental strand, 27350886 - 27350768
Alignment:
Q  110 tcagcttctactacatcgacctccgtcgacacaagtgcagaaagtaattctttactttcgcgtgcccattcagtgcattcatccttcaacttctccttct 209  Q
    ||||||||||  ||||||| |||||| ||| |||||||||| ||||| ||||| ||||   |||||||||||||||||||| |||||||||||| |||||    
T  27350886 tcagcttctatgacatcgatctccgttgacgcaagtgcagagagtaactctttgctttgcagtgcccattcagtgcattcagccttcaacttctgcttct 27350787  T
Q  210 gaacatcacatttgttcac 228  Q
    |||||||||||||||||||    
T  27350786 gaacatcacatttgttcac 27350768  T

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Target: chr3; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 26631485 - 26631365
Alignment:
Q  107 agttcagcttctactacatcgacctccgtcgacacaagtgcagaaagtaattctttactttcgcgtgcccattcagtgcattcatccttcaacttctcct 206  Q
    ||||||||||||  |||||||||| | |  ||| |||||||||||||| ||||||||||||   ||||||| ||||| |||||| |||||||||| ||||    
T  26631485 agttcagcttctcttacatcgaccccggatgacgcaagtgcagaaagttattctttactttgttgtgcccactcagtacattcagccttcaacttatcct 26631386  T
Q  207 tctgaacatcacatttgttca 227  Q
    |||||||||||||||||||||    
T  26631385 tctgaacatcacatttgttca 26631365  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 108 - 225
Target Start/End: Complemental strand, 27981190 - 27981071
Alignment:
Q  108 gttcagcttctactacatcgacctccgtcgacacaagtgcagaaagtaattctttactttcgcgtgcccattcagtgcattcatccttca--acttctcc 205  Q
    ||||||||||||  ||||||| ||| || ||  |||||||||||||||| ||||||||||   ||||||||||| |||||||| ||||||  | ||| ||    
T  27981190 gttcagcttctatcacatcgatctctgttgatgcaagtgcagaaagtaactctttactttgctgtgcccattcaatgcattcaaccttcaatatttcacc 27981091  T
Q  206 ttctgaacatcacatttgtt 225  Q
    ||||||||| ||||||||||    
T  27981090 ttctgaacaacacatttgtt 27981071  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 228
Target Start/End: Complemental strand, 28006733 - 28006595
Alignment:
Q  90 ttgccaactttctcaccagttcagcttctactacatcgacctccgtcgacacaagtgcagaaagtaattctttactttcgcgtgcccattcagtgcattc 189  Q
    ||||||||||||||||  |||| ||||||  ||  |||||||| |  ||| | |||||||||||||||||||||||||   ||||||| || | ||||||    
T  28006733 ttgccaactttctcacacgttctgcttctcttaggtcgacctctgatgacgcgagtgcagaaagtaattctttactttgttgtgcccactccgcgcattc 28006634  T
Q  190 atccttcaacttctccttctgaacatcacatttgttcac 228  Q
    | ||||||||||   |||||||||||| ||| |||||||    
T  28006633 agccttcaacttgctcttctgaacatcgcatgtgttcac 28006595  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 87 - 215
Target Start/End: Complemental strand, 27380796 - 27380668
Alignment:
Q  87 ctgttgccaactttctcaccagttcagcttctactacatcgacctccgtcgacacaagtgcagaaagtaattctttactttcgcgtgcccattcagtgca 186  Q
    |||||||||  || |||||  |||||||||||  ||| ||||||||||  ||  |||||||||||||||||||||| ||||   | ||||| ||||| ||    
T  27380796 ctgttgccagattcctcacacgttcagcttctcttacgtcgacctccgatgatgcaagtgcagaaagtaattctttgctttgttgagcccactcagtaca 27380697  T
Q  187 ttcatccttcaacttctccttctgaacat 215  Q
    |||| ||||||||||   |||||||||||    
T  27380696 ttcagccttcaacttgatcttctgaacat 27380668  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 227
Target Start/End: Complemental strand, 26632286 - 26632200
Alignment:
Q  141 caagtgcagaaagtaattctttactttcgcgtgcccattcagtgcattcatccttcaacttctccttctgaacatcacatttgttca 227  Q
    |||||||||||||||||||| ||||||   ||||||| | ||  |||||| |||||| ||| | ||||||||||||||||| |||||    
T  26632286 caagtgcagaaagtaattctctactttgttgtgcccacttagaacattcagccttcagctttttcttctgaacatcacattagttca 26632200  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 27387921 - 27388008
Alignment:
Q  141 caagtgcagaaagtaattctttactttcgcgtgcccattcagtgcattcatccttcaacttctccttctgaacatcacatttgttcac 228  Q
    |||||||||||   |||||||||||||   ||||||| ||| |||||||| | |||||||  ||||||||||||| |||| |||||||    
T  27387921 caagtgcagaagcaaattctttacttttttgtgcccactcactgcattcagcgttcaactcttccttctgaacattacatctgttcac 27388008  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 227
Target Start/End: Original strand, 19482351 - 19482437
Alignment:
Q  141 caagtgcagaaagtaattctttactttcgcgtgcccattcagtgcattcatccttcaacttctccttctgaacatcacatttgttca 227  Q
    ||||||||||||| ||||||| |||||   | ||||| | ||  |||||| |||||||||||| | ||||||||||||||| |||||    
T  19482351 caagtgcagaaagcaattcttcactttgttgggcccacttagaacattcagccttcaacttcttcatctgaacatcacattggttca 19482437  T

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Target: scaffold0043 (Bit Score: 62; Significance: 6e-27; HSPs: 3)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 87 - 228
Target Start/End: Original strand, 50779 - 50920
Alignment:
Q  87 ctgttgccaactttctcaccagttcagcttctactacatcgacctccgtcgacacaagtgcagaaagtaattctttactttcgcgtgcccattcagtgca 186  Q
    |||||||||| || ||||   ||||||||||||  |||| || |||||| ||| |||||||||| ||||| ||||| ||||   ||||||||||||||||    
T  50779 ctgttgccaaattcctcatacgttcagcttctatgacattgatctccgttgacgcaagtgcagagagtaactctttgctttgttgtgcccattcagtgca 50878  T
Q  187 ttcatccttcaacttctccttctgaacatcacatttgttcac 228  Q
    |||| |||||||||||| ||||||||||| ||||||||||||    
T  50879 ttcagccttcaacttctgcttctgaacataacatttgttcac 50920  T

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Target: scaffold0043; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 228
Target Start/End: Complemental strand, 29387 - 29314
Alignment:
Q  155 aattctttactttcgcgtgcccattcagtgcattcatccttcaacttctccttctgaacatcacatttgttcac 228  Q
    |||||||||||||   ||||||| ||| |||||||| | |||||||  |||||||| |||||||||||||||||    
T  29387 aattctttactttgttgtgcccactcactgcattcagcgttcaactcttccttctgtacatcacatttgttcac 29314  T

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Target: scaffold0043; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 228
Target Start/End: Complemental strand, 44245 - 44172
Alignment:
Q  155 aattctttactttcgcgtgcccattcagtgcattcatccttcaacttctccttctgaacatcacatttgttcac 228  Q
    |||||||||||||   ||||||| ||| |||||||| | |||||||  |||||||| |||||||||||||||||    
T  44245 aattctttactttgttgtgcccactcactgcattcagcgttcaactcttccttctgtacatcacatttgttcac 44172  T

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Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 147 - 228
Target Start/End: Original strand, 6164258 - 6164339
Alignment:
Q  147 cagaaagtaattctttactttcgcgtgcccattcagtgcattcatccttcaacttctccttctgaacatcacatttgttcac 228  Q
    |||||||||| ||||||||||   |||||||||||||||||| | || ||||| ||||||||||||||||||||||||||||    
T  6164258 cagaaagtaactctttactttgttgtgcccattcagtgcatttagccatcaacctctccttctgaacatcacatttgttcac 6164339  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 22395714 - 22395627
Alignment:
Q  141 caagtgcagaaagtaattctttactttcgcgtgcccattcagtgcattcatccttcaacttctccttctgaacatcacatttgttcac 228  Q
    |||||||||||   |||||||||||||   ||||||| ||| ||||||||   |||||||  ||||||||||||||||||||||||||    
T  22395714 caagtgcagaagcaaattctttactttgttgtgcccactcactgcattcagtgttcaactcttccttctgaacatcacatttgttcac 22395627  T

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Target: scaffold1163 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold1163
Description:

Target: scaffold1163; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 1104 - 1034
Alignment:
Q  155 aattctttactttcgcgtgcccattcagtgcattcatccttcaacttctccttctgaacatcacatttgtt 225  Q
    |||||||||||||   ||||||| ||| |||||||| | |||||||  |||||||||||||||||||||||    
T  1104 aattctttactttgttgtgcccactcactgcattcagcgttcaactcttccttctgaacatcacatttgtt 1034  T

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