View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0614_high_3 (Length: 880)
Name: NF0614_high_3
Description: NF0614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0614_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 123; Significance: 1e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 30 - 168
Target Start/End: Original strand, 23901479 - 23901617
Alignment:
| Q |
30 |
tgcaccatagagacctagctgcacttaaattgcagaaagtttacaaaagttttcgaacaagaagacaacttgcagactgtgcagttcttgcagaacagag |
129 |
Q |
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| T |
23901479 |
tgcaccatagagacctagctgcacttagattgcagaaagtttacaaaagttttcgaacaagaagacaacttgcagattgtgcagttcttgcagaacaaag |
23901578 |
T |
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| Q |
130 |
atggttagttagtttcaatatttcatatttacaagtctt |
168 |
Q |
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| T |
23901579 |
atggttagttagtttcaatatttcatatttataagtctt |
23901617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 773 - 867
Target Start/End: Original strand, 23901614 - 23901708
Alignment:
| Q |
773 |
tcttgagcctttaaaatctccatcaaactataacatataggtgttcaaaatcatgtttgtgttaccagaataattacattcatatgtagcaacag |
867 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||| |
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| T |
23901614 |
tcttgagcctttaaaatctccatcaaactataacatataggtgttcaaaatcatgtttatgtgaccagaataattacattcatatgtaacaacag |
23901708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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