View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0614_high_5 (Length: 426)

Name: NF0614_high_5
Description: NF0614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0614_high_5
NF0614_high_5
[»] chr7 (3 HSPs)
chr7 (178-413)||(14736790-14737025)
chr7 (30-100)||(14736653-14736723)
chr7 (334-378)||(2508469-2508513)
[»] chr5 (5 HSPs)
chr5 (178-413)||(17589760-17589994)
chr5 (30-100)||(17590056-17590126)
chr5 (329-378)||(3925416-3925465)
chr5 (329-378)||(4157495-4157544)
chr5 (329-370)||(5214986-5215027)
[»] chr2 (5 HSPs)
chr2 (172-409)||(35657997-35658235)
chr2 (334-378)||(44742107-44742151)
chr2 (334-387)||(27185869-27185923)
chr2 (334-387)||(27835411-27835465)
chr2 (338-376)||(38001931-38001969)
[»] chr6 (1 HSPs)
chr6 (171-382)||(30706293-30706503)
[»] chr3 (4 HSPs)
chr3 (171-282)||(5230896-5231007)
chr3 (334-390)||(9192471-9192527)
chr3 (329-378)||(8819536-8819585)
chr3 (339-370)||(557466-557497)
[»] scaffold0031 (1 HSPs)
scaffold0031 (334-378)||(96086-96130)
[»] chr4 (3 HSPs)
chr4 (333-373)||(18884936-18884976)
chr4 (329-370)||(22065668-22065709)
chr4 (334-370)||(23096677-23096713)
[»] chr1 (1 HSPs)
chr1 (343-378)||(23043407-23043442)
[»] scaffold0445 (1 HSPs)
scaffold0445 (344-378)||(10282-10316)


Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 178 - 413
Target Start/End: Original strand, 14736790 - 14737025
Alignment:
Q  178 gggggttgcagatgagaccttttgcgatgatttggttttgtaaacccaaaaggttacgattctcttaacccgaaagggtctatggttacttacgtgttga 277  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  14736790 gggggctgcagatgagaccttttgtgatgatttggttttgtaaacccgaaaggttatgattctcttaacccgaaagggtctgtggttacttacgtgttga 14736889  T
Q  278 ctcatccctcgatctaggtcaacacgttgacactggtttaattggttttcatgtggttgattctctgatgttccaggtctgttgagatctgcatgtctca 377  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||    
T  14736890 ctcatccctcgatctaggtcaacacgttgacactggtttaattggttttcatgcggttgattctctgaggttccaggtctgttgagatctgcaggtctca 14736989  T
Q  378 atgtgttaggtctacctattatccggtaccgtcttc 413  Q
    |||||| |||||||||||| ||||||||||||||||    
T  14736990 atgtgtcaggtctacctataatccggtaccgtcttc 14737025  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 14736653 - 14736723
Alignment:
Q  30 tattcaactctgttttgttcctgagccggttggatttgaggcgattttagtttctatttttgtataatcac 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14736653 tattcaactctgttttgttcctgaaccggttggatttgaggcgattttagtttctatttttgtataatcac 14736723  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 334 - 378
Target Start/End: Complemental strand, 2508513 - 2508469
Alignment:
Q  334 ttgattctctgatgttccaggtctgttgagatctgcatgtctcaa 378  Q
    |||||||||||||||||||| |||||||||||||| | |||||||    
T  2508513 ttgattctctgatgttccagatctgttgagatctgtaggtctcaa 2508469  T

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Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 178 - 413
Target Start/End: Complemental strand, 17589994 - 17589760
Alignment:
Q  178 gggggttgcagatgagaccttttgcgatgatttggttttgtaaacccaaaaggttacgattctcttaacccgaaagggtctatggttacttacgtgttga 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||| ||||||||||||||||||    
T  17589994 gggggttgcagatgagaccttttgcgatgatttggttttgtaaacccgaaagggtatgattctcttaacccgaaagggtctgtggttacttacgtgttga 17589895  T
Q  278 ctcatccctcgatctaggtcaacacgttgacactggtttaattggttttcatgtggttgattctctgatgttccaggtctgttgagatctgcatgtctca 377  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  17589894 ctcatccctcgatctaggtcaacacgttgacactggtttaattgg-tttcatgtggttgattctctgatgttccaggtctgttgagatctgcaggtctca 17589796  T
Q  378 atgtgttaggtctacctattatccggtaccgtcttc 413  Q
    |||||| |||||||||||| ||| |||| |||||||    
T  17589795 atgtgtcaggtctacctataatctggtatcgtcttc 17589760  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 30 - 100
Target Start/End: Complemental strand, 17590126 - 17590056
Alignment:
Q  30 tattcaactctgttttgttcctgagccggttggatttgaggcgattttagtttctatttttgtataatcac 100  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  17590126 tattcaactctattttgttcctgaaccggttggatttgaggcgattttagtttctatttttgtatgatcac 17590056  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 378
Target Start/End: Original strand, 3925416 - 3925465
Alignment:
Q  329 tgtggttgattctctgatgttccaggtctgttgagatctgcatgtctcaa 378  Q
    |||| |||| |||||||||  ||||||||||||||||||||| |||||||    
T  3925416 tgtgcttgactctctgatgcaccaggtctgttgagatctgcaggtctcaa 3925465  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 378
Target Start/End: Original strand, 4157495 - 4157544
Alignment:
Q  329 tgtggttgattctctgatgttccaggtctgttgagatctgcatgtctcaa 378  Q
    |||| |||||||| |||| |||||||||||||| |||||||| |||||||    
T  4157495 tgtgcttgattctttgatattccaggtctgttgtgatctgcaggtctcaa 4157544  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 370
Target Start/End: Original strand, 5214986 - 5215027
Alignment:
Q  329 tgtggttgattctctgatgttccaggtctgttgagatctgca 370  Q
    |||| |||||||||||||||| |||||||||| |||||||||    
T  5214986 tgtgattgattctctgatgtttcaggtctgttaagatctgca 5215027  T

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Target: chr2 (Bit Score: 99; Significance: 1e-48; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 172 - 409
Target Start/End: Original strand, 35657997 - 35658235
Alignment:
Q  172 gggcttggg-ggttgcagatgagaccttttgcgatgatttggttttgtaaacccaaaaggttacgattctcttaacccgaaagggtctatggttacttac 270  Q
    ||||||||| |||| |||| | |||||||| ||||| ||||||||||||||||| ||||| || | |||| ||||||| ||||||||| |||||||||||    
T  35657997 gggcttgggtggttacagacgcgaccttttacgatggtttggttttgtaaacccgaaagggtatggttctattaacccaaaagggtctgtggttacttac 35658096  T
Q  271 gtgttgactcatccctcgatctaggtcaacacgttgacactggtttaattggttttcatgtggttgattctctgatgttccaggtctgttgagatctgca 370  Q
    | ||||| |||||||| ||||| ||| ||  |||| | ||| ||||| ||||||||| |||| ||||||||||||||||||||||||||| |||||||||    
T  35658097 gcgttgattcatcccttgatctgggttaatgcgttaaaactagtttagttggttttcctgtgcttgattctctgatgttccaggtctgtttagatctgca 35658196  T
Q  371 tgtctcaatgtgttaggtctacctattatccggtaccgt 409  Q
     ||||  |||||| |||||||||| | ||| ||||||||    
T  35658197 ggtcttgatgtgtcaggtctacctctaatctggtaccgt 35658235  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 334 - 378
Target Start/End: Original strand, 44742107 - 44742151
Alignment:
Q  334 ttgattctctgatgttccaggtctgttgagatctgcatgtctcaa 378  Q
    |||||||||| || ||| |||||||||||||||||||||||||||    
T  44742107 ttgattctcttatattctaggtctgttgagatctgcatgtctcaa 44742151  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 387
Target Start/End: Original strand, 27185869 - 27185923
Alignment:
Q  334 ttgattctctgatgtt-ccaggtctgttgagatctgcatgtctcaatgtgttagg 387  Q
    |||||||||| ||||| ||| ||||||||||||||| | ||||||||||||||||    
T  27185869 ttgattctcttatgtttccatgtctgttgagatctgtaggtctcaatgtgttagg 27185923  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 387
Target Start/End: Original strand, 27835411 - 27835465
Alignment:
Q  334 ttgattctctgatgtt-ccaggtctgttgagatctgcatgtctcaatgtgttagg 387  Q
    |||||||||| ||||| ||| ||||||||||||||| | ||||||||||||||||    
T  27835411 ttgattctcttatgtttccatgtctgttgagatctgtaggtctcaatgtgttagg 27835465  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 376
Target Start/End: Original strand, 38001931 - 38001969
Alignment:
Q  338 ttctctgatgttccaggtctgttgagatctgcatgtctc 376  Q
    ||||||||||||||||||||||| ||||||||| |||||    
T  38001931 ttctctgatgttccaggtctgtttagatctgcaggtctc 38001969  T

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Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 171 - 382
Target Start/End: Complemental strand, 30706503 - 30706293
Alignment:
Q  171 agggcttggg-ggttgcagatgagaccttttgcgatgatttggttttgtaaacccaaaaggttacgattctcttaacccgaaagggtctatggttactta 269  Q
    |||||||||| ||||||||||| ||||||||| |||| |||||||| |||||||| ||||| || |  | | ||||| ||||||||||| | ||||||||    
T  30706503 agggcttgggtggttgcagatgtgaccttttgagatggtttggttt-gtaaacccgaaagggtatggct-tattaactcgaaagggtctgtagttactta 30706406  T
Q  270 cgtgttgactcatccctcgatctaggtcaacacgttgacactggtttaattggttttcatgtggttgattctctgatgttccaggtctgttgagatctgc 369  Q
    | ||||||||||||||||||| | ||||||| |||||| ||||||||| | |||||||||||| || ||||| | ||||||||||| |||||||| ||||    
T  30706405 catgttgactcatccctcgatttgggtcaacgcgttgaaactggtttagtaggttttcatgtgcttaattctttaatgttccaggtttgttgagacctgc 30706306  T
Q  370 atgtctcaatgtg 382  Q
    | |||||||||||    
T  30706305 aggtctcaatgtg 30706293  T

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Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 171 - 282
Target Start/End: Complemental strand, 5231007 - 5230896
Alignment:
Q  171 agggcttggg-ggttgcagatgagaccttttgcgatgatttggttttgtaaacccaaaaggttacgattctcttaacccgaaagggtctatggttactta 269  Q
    |||||||||| ||||||||||| || ||||||||||| |||||||| |||||||| ||||| || || | | ||||||||||||||||| ||||||||||    
T  5231007 agggcttgggtggttgcagatgtgatcttttgcgatggtttggttt-gtaaacccgaaagggtatgactttattaacccgaaagggtctgtggttactta 5230909  T
Q  270 cgtgttgactcat 282  Q
    | |||||||||||    
T  5230908 catgttgactcat 5230896  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 334 - 390
Target Start/End: Complemental strand, 9192527 - 9192471
Alignment:
Q  334 ttgattctctgatgttccaggtctgttgagatctgcatgtctcaatgtgttaggtct 390  Q
    |||||||||||||||||||||||||||||||| |||| ||||||| ||| |||||||    
T  9192527 ttgattctctgatgttccaggtctgttgagatttgcaggtctcaaggtgataggtct 9192471  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 378
Target Start/End: Complemental strand, 8819585 - 8819536
Alignment:
Q  329 tgtggttgattctctgatgttccaggtctgttgagatctgcatgtctcaa 378  Q
    |||| ||||||||||||||||||||||||||||||||||| | |||||||    
T  8819585 tgtgattgattctctgatgttccaggtctgttgagatctgtaggtctcaa 8819536  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 370
Target Start/End: Original strand, 557466 - 557497
Alignment:
Q  339 tctctgatgttccaggtctgttgagatctgca 370  Q
    ||||||||||||||||||||||||||||||||    
T  557466 tctctgatgttccaggtctgttgagatctgca 557497  T

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Target: scaffold0031 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 334 - 378
Target Start/End: Complemental strand, 96130 - 96086
Alignment:
Q  334 ttgattctctgatgttccaggtctgttgagatctgcatgtctcaa 378  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  96130 ttgattctctgatgttccagatctgttgagatctgcatgtctcaa 96086  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 333 - 373
Target Start/End: Original strand, 18884936 - 18884976
Alignment:
Q  333 gttgattctctgatgttccaggtctgttgagatctgcatgt 373  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  18884936 gttgattctctgatgttccaggtctgttgagatctgcatgt 18884976  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 370
Target Start/End: Original strand, 22065668 - 22065709
Alignment:
Q  329 tgtggttgattctctgatgttccaggtctgttgagatctgca 370  Q
    |||| |||| ||||||||||||||||||||||||||||||||    
T  22065668 tgtgcttgactctctgatgttccaggtctgttgagatctgca 22065709  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 370
Target Start/End: Complemental strand, 23096713 - 23096677
Alignment:
Q  334 ttgattctctgatgttccaggtctgttgagatctgca 370  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  23096713 ttgattctctgatgttcctggtctgttgagatatgca 23096677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 378
Target Start/End: Original strand, 23043407 - 23043442
Alignment:
Q  343 tgatgttccaggtctgttgagatctgcatgtctcaa 378  Q
    ||||||||||||| ||||||||||||||||||||||    
T  23043407 tgatgttccaggtttgttgagatctgcatgtctcaa 23043442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 378
Target Start/End: Original strand, 10282 - 10316
Alignment:
Q  344 gatgttccaggtctgttgagatctgcatgtctcaa 378  Q
    ||||||||||||||||||||||||||| |||||||    
T  10282 gatgttccaggtctgttgagatctgcaagtctcaa 10316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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