View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0614_high_6 (Length: 386)
Name: NF0614_high_6
Description: NF0614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0614_high_6 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 178 - 386
Target Start/End: Original strand, 35317147 - 35317355
Alignment:
| Q |
178 |
gaaccaaacctctctctctttcaatccataaaaacatataaccctaaagaaacacaacacaatcatgtcccttgaagactcactaagatctctttcttta |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35317147 |
gaaccaaacctctctctctttcaatccataaaaacatataaccctaaacaaacacaacacaatcatgtcccttgaagactcactaagatctctttcttta |
35317246 |
T |
|
| Q |
278 |
gactacttaaaccttctcatcaacggacaagcgttcagcgacgttgttttcagcgtcgaaggacgtttagtccacgcacacagacgcatcttagcagcaa |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
35317247 |
gactacttaaaccttctcatcaacggacaagcgttcagcgacgttgttttcagcgtcgaaggacgtttagtccacgcacacagatgcatcttagcagcaa |
35317346 |
T |
|
| Q |
378 |
gaagtctat |
386 |
Q |
| |
|
||||||||| |
|
|
| T |
35317347 |
gaagtctat |
35317355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 35316987 - 35317092
Alignment:
| Q |
13 |
aatatctcctatcacacatttcccatcccaacaggtatacccctccatatatcagaatccctcaaaaaacaacaatcacagtaacctttcctttctttct |
112 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35316987 |
aatatctcctatcaca--tttcccatcccaacaggtatacccctccatatataagaatccctcaaaaaacaacaatcacagtaacctttcctttctttct |
35317084 |
T |
|
| Q |
113 |
ttccacca |
120 |
Q |
| |
|
|||||||| |
|
|
| T |
35317085 |
ttccacca |
35317092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 321
Target Start/End: Complemental strand, 19890100 - 19890020
Alignment:
| Q |
241 |
catgtcccttgaagactcactaagatctctttctttagactacttaaaccttctcatcaacggacaagcgttcagcgacgt |
321 |
Q |
| |
|
||||||||||||||| | ||||||||||| || | |||||| | || || ||||||||||| ||||| ||||||||||| |
|
|
| T |
19890100 |
catgtcccttgaagagactctaagatctctctcccttgactacctgaatctcctcatcaacggccaagccttcagcgacgt |
19890020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2499 times since January 2019
Visitors: 3819