View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0614_low_1 (Length: 917)
Name: NF0614_low_1
Description: NF0614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0614_low_1 |
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| [»] scaffold0062 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 685; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 685; E-Value: 0
Query Start/End: Original strand, 96 - 904
Target Start/End: Complemental strand, 22104730 - 22103922
Alignment:
| Q |
96 |
aatccaacctatccttattagtagtacaatcatcaatttttaaaagtcggccttgtgttgccgccaactccagaaagaaaatttcattccatacatgaag |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
22104730 |
aatccaacctatccttattagtagtacaatcatcaatttttaaaagtcggccttgtgttgccgccaactccagaaagaaaatgtcattccatacatgaag |
22104631 |
T |
|
| Q |
196 |
aggcactccataacatctcacccatgatcccctctcatagttcacaatagaatccaacgtccaaggtctacaatcatccaaaaaattaccaataaaatca |
295 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
22104630 |
aggcactccataacatctcacccatgctcccctctcatagttcacaatagaatccaacatccagggtctacaatcatccaaaaaattaccaataaaatca |
22104531 |
T |
|
| Q |
296 |
actgccgccttgaaaagttccatagcatcaccttcgacacctggatgcaaaacaacattgtctccacccaaagaaataagcttgaaatccacaaactccg |
395 |
Q |
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| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
22104530 |
gccgccgccttgaaaagttccatagcatcaccttcgacacccggatgcaaaacaacattgtcttcacccaaagaaataagcttgaaatccacaaacccca |
22104431 |
T |
|
| Q |
396 |
catcaacgaaagcttgttgaacaatagacaagcaaaagtcattttttagtcttgctaaaatactcttggaggcccaagtaatgtcatctgtgaacggcat |
495 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
22104430 |
catcaacgaaagcttgttgaacaatatacaagcaaaagtcatttttaagtcttgctaaaatactcttggatgcccaagtaatgtcatctgtgaacggcat |
22104331 |
T |
|
| Q |
496 |
gaatttacacatcactttcttttcaacatcagcgccattaactagctccttcaccatcactttctttgaatttatacatcaatctattgggaaaattggt |
595 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
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| T |
22104330 |
gaatttacacatcactttcttttcaacatcagcgccattaactagctccttcaccatcactttctttgaatttatacatcaatctattaggaaaatttgt |
22104231 |
T |
|
| Q |
596 |
aatgtaatacacagcagatacctgagttgacactgctggagcgttgccactcttgtcttcagcagttgtgatttttgacagttttgagcctatgcctgca |
695 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
22104230 |
aatgtaatacacagcagatacctgagttgacactgctggagcgttgccactctcatcttcagcagttgtggtttttgacagttttgagcctatgcctgca |
22104131 |
T |
|
| Q |
696 |
ttgctgatgcgtgagtctccctcttgcatgtactgatcctccctcgatttgataacaccctccctcgtacacgaaaacggacgatcacgacagtgtgtca |
795 |
Q |
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||||| || | ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||| |||||||| |
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| T |
22104130 |
ttgcttatacacgagtctccctcttgcctgtactgatcctccctcgattcgataacaccctccctcgtacccaaaaacggacgatcacgacggtgtgtca |
22104031 |
T |
|
| Q |
796 |
atgaccgtccacgtccatactcatgcaaaaccctatccctgggcaattgatcaacacgcaaattgaccctactgcgaggcctgctgtcaaacctgtcgat |
895 |
Q |
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|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
22104030 |
atgaccatccacgtccatactcatgcaaaaccctaaccctgggcaattgatcaacacgcaaactgaccctactgcgaggcctgctgtcaaacctgtcggt |
22103931 |
T |
|
| Q |
896 |
gccatacct |
904 |
Q |
| |
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||||||||| |
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| T |
22103930 |
gccatacct |
22103922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 117 - 295
Target Start/End: Original strand, 13702 - 13880
Alignment:
| Q |
117 |
tagtacaatcatcaatttttaaaagtcggccttgtgttgccgccaactccagaaagaaaatttcattccatacatgaagaggcactccataacatctcac |
216 |
Q |
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||||||||||||| ||||| | || || |||||||||| |||| ||| | |||||| || ||||||| | ||||||||||| ||| ||||| |||| |
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| T |
13702 |
tagtacaatcatctattttaagaactctaccttgtgttgttgccagctcgaaaaagaagataatattccatgcttgaagaggcaccccaaaacatgtcac |
13801 |
T |
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| Q |
217 |
ccatgatcccctctcatagttcacaatagaatccaacgtccaaggtctacaatcatccaaaaaattaccaataaaatca |
295 |
Q |
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||| | ||||||||||| ||||||| | ||| ||||||||||||||| || ||||||||||||||||| |||||| |
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| T |
13802 |
ccaagcacccctctcataattcacaaccgtctccttcgtccaaggtctacactcgtccaaaaaattaccaatcaaatca |
13880 |
T |
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