View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0614_low_10 (Length: 354)
Name: NF0614_low_10
Description: NF0614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0614_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 178 - 344
Target Start/End: Original strand, 14736790 - 14736956
Alignment:
| Q |
178 |
gggggttgcagatgagaccttttgcgatgatttggttttgtaaacccaaaaggttacgattctcttaacccgaaagggtctatggttacttacgtgttga |
277 |
Q |
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| T |
14736790 |
gggggctgcagatgagaccttttgtgatgatttggttttgtaaacccgaaaggttatgattctcttaacccgaaagggtctgtggttacttacgtgttga |
14736889 |
T |
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| Q |
278 |
ctcatccctcgatctaggtcaacacgttgacactggtttaattggttttcatgtggttgattctctg |
344 |
Q |
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| T |
14736890 |
ctcatccctcgatctaggtcaacacgttgacactggtttaattggttttcatgcggttgattctctg |
14736956 |
T |
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Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 14736653 - 14736723
Alignment:
| Q |
30 |
tattcaactctgttttgttcctgagccggttggatttgaggcgattttagtttctatttttgtataatcac |
100 |
Q |
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| T |
14736653 |
tattcaactctgttttgttcctgaaccggttggatttgaggcgattttagtttctatttttgtataatcac |
14736723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 178 - 344
Target Start/End: Complemental strand, 17589994 - 17589829
Alignment:
| Q |
178 |
gggggttgcagatgagaccttttgcgatgatttggttttgtaaacccaaaaggttacgattctcttaacccgaaagggtctatggttacttacgtgttga |
277 |
Q |
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| T |
17589994 |
gggggttgcagatgagaccttttgcgatgatttggttttgtaaacccgaaagggtatgattctcttaacccgaaagggtctgtggttacttacgtgttga |
17589895 |
T |
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| Q |
278 |
ctcatccctcgatctaggtcaacacgttgacactggtttaattggttttcatgtggttgattctctg |
344 |
Q |
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| T |
17589894 |
ctcatccctcgatctaggtcaacacgttgacactggtttaattgg-tttcatgtggttgattctctg |
17589829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 30 - 100
Target Start/End: Complemental strand, 17590126 - 17590056
Alignment:
| Q |
30 |
tattcaactctgttttgttcctgagccggttggatttgaggcgattttagtttctatttttgtataatcac |
100 |
Q |
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| T |
17590126 |
tattcaactctattttgttcctgaaccggttggatttgaggcgattttagtttctatttttgtatgatcac |
17590056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 172 - 344
Target Start/End: Original strand, 35657997 - 35658170
Alignment:
| Q |
172 |
gggcttggg-ggttgcagatgagaccttttgcgatgatttggttttgtaaacccaaaaggttacgattctcttaacccgaaagggtctatggttacttac |
270 |
Q |
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| T |
35657997 |
gggcttgggtggttacagacgcgaccttttacgatggtttggttttgtaaacccgaaagggtatggttctattaacccaaaagggtctgtggttacttac |
35658096 |
T |
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| Q |
271 |
gtgttgactcatccctcgatctaggtcaacacgttgacactggtttaattggttttcatgtggttgattctctg |
344 |
Q |
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| T |
35658097 |
gcgttgattcatcccttgatctgggttaatgcgttaaaactagtttagttggttttcctgtgcttgattctctg |
35658170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 171 - 341
Target Start/End: Complemental strand, 30706503 - 30706334
Alignment:
| Q |
171 |
agggcttggg-ggttgcagatgagaccttttgcgatgatttggttttgtaaacccaaaaggttacgattctcttaacccgaaagggtctatggttactta |
269 |
Q |
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|||||||||| ||||||||||| ||||||||| |||| |||||||| |||||||| ||||| || | | | ||||| ||||||||||| | |||||||| |
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| T |
30706503 |
agggcttgggtggttgcagatgtgaccttttgagatggtttggttt-gtaaacccgaaagggtatggct-tattaactcgaaagggtctgtagttactta |
30706406 |
T |
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| Q |
270 |
cgtgttgactcatccctcgatctaggtcaacacgttgacactggtttaattggttttcatgtggttgattct |
341 |
Q |
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| T |
30706405 |
catgttgactcatccctcgatttgggtcaacgcgttgaaactggtttagtaggttttcatgtgcttaattct |
30706334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 171 - 282
Target Start/End: Complemental strand, 5231007 - 5230896
Alignment:
| Q |
171 |
agggcttggg-ggttgcagatgagaccttttgcgatgatttggttttgtaaacccaaaaggttacgattctcttaacccgaaagggtctatggttactta |
269 |
Q |
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| T |
5231007 |
agggcttgggtggttgcagatgtgatcttttgcgatggtttggttt-gtaaacccgaaagggtatgactttattaacccgaaagggtctgtggttactta |
5230909 |
T |
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| Q |
270 |
cgtgttgactcat |
282 |
Q |
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| T |
5230908 |
catgttgactcat |
5230896 |
T |
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