View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0614_low_11 (Length: 336)
Name: NF0614_low_11
Description: NF0614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0614_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 30 - 326
Target Start/End: Complemental strand, 21124203 - 21123907
Alignment:
| Q |
30 |
attatgatggtcctgatgtttcaagcacagattggccaccttctttgttactaagttggcaagttgggagatccaattacaacagtaccagaattgcttt |
129 |
Q |
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| T |
21124203 |
attatgatggccctgatgtttcaagcacatattggccaccttctttgttactaagttggcaagttggaagatccaattacaatagtaccataattgcttt |
21124104 |
T |
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| Q |
130 |
gttggattctcttggaaagttcatatcatctgataattacactttttccacttatgattatggtatggttatgcaaagaaaattaaccatggattatgat |
229 |
Q |
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| T |
21124103 |
gttggattctcttggaaagttcatatcatctgataattacactttttccacttatgattatggtatggttatgcaaagaaaattaaccatggattatgat |
21124004 |
T |
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| Q |
230 |
ggtaatgttcgagtttatagtcgaaaaaacatgtcagaaaattggtatgtttcatggcaagtaatatctgacacttgcatcattcatggagtctgtg |
326 |
Q |
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| T |
21124003 |
ggtaatgttcgagtttatagtcgaaaaaacatgtcagaaaattggtatgtttcatggcaagtcatatctgacacttgcatcattcatggagtttgtg |
21123907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 27 - 326
Target Start/End: Complemental strand, 18659934 - 18659635
Alignment:
| Q |
27 |
tcaattatgatggtcctgatgtttcaagcacagattggccaccttctttgttactaagttggcaagttgggagatccaattacaacagtaccagaattgc |
126 |
Q |
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| T |
18659934 |
tcaattatgatggtcctgatgtttcaagtacatattggccacctgctttattgttaagctggcaagctggaagatccaattacaatagtagtagaattgc |
18659835 |
T |
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| Q |
127 |
tttgttggattctcttggaaagttcatatcatctgataattacactttttccacttatgattatggtatggttatgcaaagaaaattaaccatggattat |
226 |
Q |
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| T |
18659834 |
attgttggattctcttggaaagttcatatcatctgataattacattttttccacttatgattatggtatggtcatgcaaagaaaattaaccatggattct |
18659735 |
T |
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| Q |
227 |
gatggtaatgttcgagtttatagtcgaaaaaacatgtcagaaaattggtatgtttcatggcaagtaatatctgacacttgcatcattcatggagtctgtg |
326 |
Q |
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|||||||||||||||||||| |||||||||||| |||||| ||||||| |||||||||||||||| ||| ||||||||||||||||||||||||| |||| |
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| T |
18659734 |
gatggtaatgttcgagtttacagtcgaaaaaacttgtcagcaaattggcatgtttcatggcaagtcatacctgacacttgcatcattcatggagtttgtg |
18659635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 30 - 312
Target Start/End: Complemental strand, 21112809 - 21112527
Alignment:
| Q |
30 |
attatgatggtcctgatgtttcaagcacagattggccaccttctttgttactaagttggcaagttgggagatccaattacaacagtaccagaattgcttt |
129 |
Q |
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||||||||||||||||| ||||||||||| |||||||||| ||||| || |||||||||||| ||| || |||||||||| ||||| ||||||||||| |
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| T |
21112809 |
attatgatggtcctgatatttcaagcacatattggccaccatcttttttgttaagttggcaagctggaaggaccaattacaatagtactagaattgcttt |
21112710 |
T |
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| Q |
130 |
gttggattctcttggaaagttcatatcatctgataattacactttttccacttatgattatggtatggttatgcaaagaaaattaaccatggattatgat |
229 |
Q |
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| T |
21112709 |
gttggattctcttggaaagttcatatcatctgataattactttttttccacatatgattatggtatggttatgcaaagaagattaaccttggattctgat |
21112610 |
T |
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| Q |
230 |
ggtaatgttcgagtttatagtcgaaaaaacatgtcagaaaattggtatgtttcatggcaagtaatatctgacacttgcatcat |
312 |
Q |
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| T |
21112609 |
ggtaatattcgagtttacagccgaaaaaacttgttagaaaattggtatgtttcatggcaagtcatatctgacacctgcatcat |
21112527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 30 - 291
Target Start/End: Complemental strand, 21131769 - 21131508
Alignment:
| Q |
30 |
attatgatggtcctgatgtttcaagcacagattggccaccttctttgttactaagttggcaagttgggagatccaattacaacagtaccagaattgcttt |
129 |
Q |
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||||||||||||||||||||||||||||| |||||||||| ||| ||| |||||||| ||| ||| || | ||||||||| |||| ||||||||||| |
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| T |
21131769 |
attatgatggtcctgatgtttcaagcacatattggccaccaccttggttgttaagttgggaagctggaaggttcaattacaatagtagtagaattgcttt |
21131670 |
T |
|
| Q |
130 |
gttggattctcttggaaagttcatatcatctgataattacactttttccacttatgattatggtatggttatgcaaagaaaattaaccatggattatgat |
229 |
Q |
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|| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||| || | |||||||| ||| |
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| T |
21131669 |
cttagattctcttggaaagttcatttcatctgataattacactttttccacatatgattatggcatggttatgcaaagaaggttgagcatggattctgac |
21131570 |
T |
|
| Q |
230 |
ggtaatgttcgagtttatagtcgaaaaaacatgtcagaaaattggtatgtttcatggcaagt |
291 |
Q |
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| T |
21131569 |
ggtaatattcgtgtttacagtcgaaaaaacttgtcaaaaaattggtatgtttcatggcaagt |
21131508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 209
Target Start/End: Original strand, 21097493 - 21097622
Alignment:
| Q |
80 |
ctaagttggcaagttgggagatccaattacaacagtaccagaattgctttgttggattctcttggaaagttcatatcatctgataattacactttttcca |
179 |
Q |
| |
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||||||||| | ||||| ||||| |||| ||| |||| ||||| ||| ||||||||||| |||| | ||| ||||| ||||||| ||||||||| | |
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| T |
21097493 |
ctaagttgggatgttggcagatctaatttcaatagtagcagaaatgcagtgttggattcttttggtagtttccattcatcagataatttcactttttcaa |
21097592 |
T |
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| Q |
180 |
cttatgattatggtatggttatgcaaagaa |
209 |
Q |
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||| ||||||||| | ||| ||||||||| |
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| T |
21097593 |
cttctgattatggaactgttctgcaaagaa |
21097622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 32 - 319
Target Start/End: Original strand, 39130969 - 39131256
Alignment:
| Q |
32 |
tatgatggtcctgatgtttcaagcacagattggccaccttctttgttactaagttggcaagttgggagatccaattacaacagtaccagaattgctttgt |
131 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||| | | ||| |||||||||||| ||| || | |||||| || |||| ||||||||||||| |
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| T |
39130969 |
tatgatggtcctgatgtttcaagcacatattggccaccaccatggttgttaagttggcaagctggaaggttcaattataatagtagtagaattgctttgt |
39131068 |
T |
|
| Q |
132 |
tggattctcttggaaagttcatatcatctgataattacactttttccacttatgattatggtatggttatgcaaagaaaattaaccatggattatgatgg |
231 |
Q |
| |
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||||||||| ||||||||| || |||||||||||||||| ||||||||| |||||||| |||| |||||||||||||| |||||||||||||| |||||| |
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| T |
39131069 |
tggattctcatggaaagtttatttcatctgataattacattttttccacatatgattacggtacggttatgcaaagaagattaaccatggattctgatgg |
39131168 |
T |
|
| Q |
232 |
taatgttcgagtttatagtcgaaaaaacatgtcagaaaattggtatgtttcatggcaagtaatatctgacacttgcatcattcatgga |
319 |
Q |
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|||| |||| ||||| |||||||||| ||| ||||||||||||||||||||||||||| |||| ||| || |||| |||||||||| |
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| T |
39131169 |
taatattcgtgtttacagtcgaaaaagtttgttagaaaattggtatgtttcatggcaagtcatatatgatacatgcaccattcatgga |
39131256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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