View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0614_low_13 (Length: 284)
Name: NF0614_low_13
Description: NF0614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0614_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 226800 - 227042
Alignment:
| Q |
13 |
aatatcacaacaattacatattatttccctgttcaatgagaagattccttgtgggctataggtctccaatctaatttttcctctccttatggccaattca |
112 |
Q |
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| T |
226800 |
aatatcacaacaattacatattatttccctgttcaatgagaagattccttgtgggctataggcctccaatctaatttttcctctccttatggccaattca |
226899 |
T |
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| Q |
113 |
aaaacgccggctcagtgaatgttactgttatattgcagacaggcagttcaagtcataaactacttatcaatgctcattagtaaagttattgggctcttgt |
212 |
Q |
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| T |
226900 |
aaaacgccggctcagtgaatgttactgttatattgcagacaggcagttcaagtcataaactacttatcaatgctcattagtaaagttattgggctcttgt |
226999 |
T |
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| Q |
213 |
aaacacaaatacgcctcctcctccaccaacagcacgacctaaa |
255 |
Q |
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| T |
227000 |
aaacacaaatacgcctcctcctccaccaacagcacgacctaaa |
227042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 56 - 248
Target Start/End: Original strand, 236486 - 236673
Alignment:
| Q |
56 |
attccttgtgggctataggtctccaatctaatttttcctctccttatggccaattcaaaaacgccggctcagtgaatgttactgttatattgcagacagg |
155 |
Q |
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| T |
236486 |
attccttgtggactacaggcctccaatctatttcttcctctccatatggccaattcctcaacgatggcttatcgagtgttactgttat--tgctgtcaaa |
236583 |
T |
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| Q |
156 |
cagttcaagtcataaactacttatcaatgctcattagtaaagttattgggctcttgtaaacacaaatacgcctcctcctccaccaacagcacg |
248 |
Q |
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| T |
236584 |
cagtaaaagtcttaaactactgatcaatgctcgtcagtaaagtgattgggctctcgtaaacacaaata---ctcctcctccaccaacagcacg |
236673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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