View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0614_low_19 (Length: 271)
Name: NF0614_low_19
Description: NF0614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0614_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 39 - 225
Target Start/End: Original strand, 7695749 - 7695935
Alignment:
| Q |
39 |
ataaatttaacattttgatagccaagttaaaacaaccatagccataactcattagaaaaagaataagatgaaattagagggtctggaaaatatagcaaca |
138 |
Q |
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| T |
7695749 |
ataaatttaacattttgatagccaagttaaaacaaccatagccataactcatttgaaaaggaaaaggataaaatcagagggtctggaaaatatagcaaca |
7695848 |
T |
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| Q |
139 |
agaaagacttcaaattcatggaaagtctaccatcatgacttctttccataatctcaagattaacagagtctactcgtaagagttcat |
225 |
Q |
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| T |
7695849 |
agaaagacttcaaattcatggaaagtctaccatcatgacttctttccatgatctcaagattaacggagtctactcgtaagagctcat |
7695935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 44465041 - 44465102
Alignment:
| Q |
125 |
aaaatatagcaacaagaaagacttcaaattcatggaaagtctaccatcatgacttctttcca |
186 |
Q |
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| T |
44465041 |
aaaacatagcaacaagaaagacttgagatttatggaaagtctatcattgtaacttctttcca |
44465102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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