View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0614_low_23 (Length: 260)
Name: NF0614_low_23
Description: NF0614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0614_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 30 - 257
Target Start/End: Complemental strand, 9441267 - 9441040
Alignment:
| Q |
30 |
aaaccgactatcctataagtttaaattgttaagtaaaaaaggacatgaattttatatctgatacacctcatatatttgtcatcctttctcatgaatatgt |
129 |
Q |
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| T |
9441267 |
aaaccgactatcctataagtttaaattgttaagtaaaaaaggacatgaattttatatctgatacacctcatatatttgtcatcctttctcatgaatatgt |
9441168 |
T |
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| Q |
130 |
aaaatattgaattttatcaataaacacacattattattaagcaaagagttgaatcttattctccctgtgtcatacagtttcttccaggagcatgtttggc |
229 |
Q |
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| T |
9441167 |
aaaatattgaattttatcaataaacgcacattattattaagcaaagagttgaatcttattcaccctgtgtcatacagtttcttccaggagcatgtttggc |
9441068 |
T |
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| Q |
230 |
agcagaaaagaatatccgaggcatgtgt |
257 |
Q |
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| T |
9441067 |
agcagaaaagaatatccgaggcatgtgt |
9441040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 260
Target Start/End: Complemental strand, 9452494 - 9452263
Alignment:
| Q |
30 |
aaaccgactatcctataagtttaaattgttaagtaaaaaaggacatgaattttatatctgatacacctcatatatttgtcatcctttctcatgaatatgt |
129 |
Q |
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| T |
9452494 |
aaaccaactatcctatgagttaaagttgttaagtaaaa--ggacatgaattttataacttacacaccttagatatttctcatccattctcatgaatatgc |
9452397 |
T |
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| Q |
130 |
aaaatattgaattttatcaataaa-cacacattattattaagcaaagagttgaatcttattctccct----gtgtcatacagtttcttccaggagcatgt |
224 |
Q |
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| T |
9452396 |
acaatccttgattttataaaaaaattacacatcattattaaggaa--tatttaataatattacctgttttcgtgtcatacagtttcaaccaggagcatgc |
9452299 |
T |
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| Q |
225 |
ttggcagcagaaaagaatatccgaggcatgtgtcgt |
260 |
Q |
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| T |
9452298 |
ttggcagcaggaaagaatatccgaggcatgtgtcgt |
9452263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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