View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0614_low_4 (Length: 709)

Name: NF0614_low_4
Description: NF0614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0614_low_4
NF0614_low_4
[»] chr5 (5 HSPs)
chr5 (81-694)||(39952349-39952963)
chr5 (289-410)||(23920117-23920238)
chr5 (387-482)||(22917308-22917404)
chr5 (387-485)||(13596832-13596931)
chr5 (392-458)||(1685106-1685172)
[»] chr3 (3 HSPs)
chr3 (482-658)||(50416814-50416993)
chr3 (392-472)||(42614280-42614360)
chr3 (424-485)||(41053754-41053816)
[»] chr2 (5 HSPs)
chr2 (81-214)||(37221990-37222123)
chr2 (375-484)||(25123459-25123571)
chr2 (394-485)||(45003691-45003783)
chr2 (406-472)||(15084343-15084409)
chr2 (395-447)||(44800576-44800628)
[»] chr4 (5 HSPs)
chr4 (81-202)||(34230119-34230240)
chr4 (394-485)||(5482954-5483046)
chr4 (394-485)||(1694811-1694903)
chr4 (393-472)||(36678774-36678851)
chr4 (408-472)||(1967467-1967531)
[»] scaffold0001 (1 HSPs)
scaffold0001 (289-467)||(12729-12907)
[»] chr8 (6 HSPs)
chr8 (81-198)||(30339685-30339802)
chr8 (287-457)||(24847957-24848127)
chr8 (289-410)||(30344377-30344498)
chr8 (373-485)||(28940743-28940856)
chr8 (394-485)||(2680265-2680357)
chr8 (430-485)||(30344500-30344557)
[»] chr6 (11 HSPs)
chr6 (289-410)||(18985279-18985400)
chr6 (361-457)||(8746751-8746847)
chr6 (392-485)||(2627674-2627763)
chr6 (426-485)||(11681699-11681760)
chr6 (393-485)||(22978347-22978435)
chr6 (393-485)||(23809968-23810056)
chr6 (390-472)||(34218741-34218820)
chr6 (387-458)||(22721094-22721165)
chr6 (406-485)||(1363155-1363235)
chr6 (392-472)||(11168835-11168915)
chr6 (289-341)||(11682650-11682702)
[»] chr7 (8 HSPs)
chr7 (289-427)||(25350576-25350714)
chr7 (289-427)||(25356270-25356408)
chr7 (407-472)||(33097879-33097944)
chr7 (387-482)||(25731043-25731139)
chr7 (407-467)||(31299417-31299477)
chr7 (424-485)||(33105296-33105358)
chr7 (406-458)||(4478967-4479019)
chr7 (406-483)||(21895080-21895159)
[»] chr1 (3 HSPs)
chr1 (387-485)||(29693301-29693400)
chr1 (392-485)||(52037420-52037514)
chr1 (392-472)||(13624230-13624309)


Alignment Details
Target: chr5 (Bit Score: 542; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 81 - 694
Target Start/End: Original strand, 39952349 - 39952963
Alignment:
Q  81 ccatcgaaggatcaagatgtttcactataatgggtcattgtacttcaagcagatgtttgacaagttataccaggtcagtagtatctcgaactcttgctga 180  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39952349 ccattgaaggatcaagatgtttcactataacgggtcattgtacttcaagcagatgtttgacaagttataccaggtcagtagtatctcgaactcttgctga 39952448  T
Q  181 ttattgtttttgtatatcctttccgcagatgtcaatggatatggtgtgagtagattgaactctggttttgttggtgctctaatttcgctaatcacttcat 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  39952449 ttattgtttttgtatatcctttccgcagatgtcaatggatatggtgtgagtagattgaactctggttttgttggtgctttaatttcgctaatcacttcat 39952548  T
Q  281 ttttgg-agcatctatatttatgctgcagtacattatgtatgtaatgacaataattgttatgctatcttttatgccatgttttagaccatgcatcacaaa 379  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  39952549 ttttggcagcatctatatttatgctgcagtacattatgtatgtaatgacaataattgttatgctatcttttatgccatgctttagaccatgcatcacaaa 39952648  T
Q  380 tattcggattatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaagtacgta 479  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  39952649 tattcggattatgcgaccttcgttctcaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccgttagagcaaatttttaaaaagtacgta 39952748  T
Q  480 attcaaatgagaataaatcatcgattgtataaactttgttttgatggttaacatcagaaaccatagcttgcaacatatttgggaaagactaaaagtttgg 579  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39952749 attcaaatgagaataaatcatcgattgtataaactttgttgtgatggttaacatcagaaaccatagcttgcaacatatttgggaaagactaaaagtttgg 39952848  T
Q  580 atatatctgataatgtgacatggatgtgtctattattttagtgatatattgatgagaaagctagcatctaacttaactannnnnnnnnnncattcgcaga 679  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||           ||||||||||    
T  39952849 atatatctgataatgtgacatggatgtgtctattattttagtgatatattgatgtgaaagctagcatctaacttaactatttttttttttcattcgcaga 39952948  T
Q  680 gttattctttttcat 694  Q
    |||||||||||||||    
T  39952949 gttattctttttcat 39952963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 289 - 410
Target Start/End: Original strand, 23920117 - 23920238
Alignment:
Q  289 catctatatttatgctgcagtacattatgtatgtaatgacaataattgttatgctatcttttatgccatgttttagaccatgcatcacaaatattcggat 388  Q
    ||||||||||| ||||| ||||||||||||| | ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  23920117 catctatatttctgctggagtacattatgtacgcaatgacaataattgttatgctatctttaatgccatgtcttagaccatgcatcacaaatattcggat 23920216  T
Q  389 tatgcgaccttcgttcccaaat 410  Q
    |||| ||||||||||| |||||    
T  23920217 tatgtgaccttcgttcacaaat 23920238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 387 - 482
Target Start/End: Original strand, 22917308 - 22917404
Alignment:
Q  387 attatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaa-tttttaaaaagtacgtaatt 482  Q
    ||||||| |||||||||| |||||||| ||| |||||||||||   ||||||||||||||| ||| |||||||||| |||||||||| |||||||||    
T  22917308 attatgcaaccttcgttctcaaatttacgaagaatggcaatgtcgcgtaatttgaacatctatcctttagagcaaattttttaaaaattacgtaatt 22917404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 387 - 485
Target Start/End: Original strand, 13596832 - 13596931
Alignment:
Q  387 attatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaa-atttttaaaaagtacgtaattcaa 485  Q
    ||||||| |||||||||| |||||||| |||  ||||||||||    |||||||||||||||||| |||||||||  |||||||||| ||||||||||||    
T  13596832 attatgcaaccttcgttctcaaatttacgaagcatggcaatgtcgcataatttgaacatctctcctttagagcaatttttttaaaaaatacgtaattcaa 13596931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 392 - 458
Target Start/End: Complemental strand, 1685172 - 1685106
Alignment:
Q  392 gcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagag 458  Q
    ||||||||||||| |||| ||| ||| ||| ||||||||| ||||||||||||||||||| ||||||    
T  1685172 gcgaccttcgttctcaaaattacgaagaatagcaatgttccgtaatttgaacatctctcctttagag 1685106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 122; Significance: 3e-62; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 482 - 658
Target Start/End: Complemental strand, 50416993 - 50416814
Alignment:
Q  482 tcaaatgagaataaatcatcgattgtataaactttgttttgatggttaacatcagaaaccatagcttgcaacatatttgggaaagactaaaagtttggat 581  Q
    |||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||| ||    
T  50416993 tcaaatgagaataaattatagattgtataaactttgttgtgatggttaacatcagaaaccattgctttcaacatatctgggaaagactaaaagtttgcat 50416894  T
Q  582 atatctgataatgtgacatggatgtgtc---tattattttagtgatatattgatgagaaagctagcatctaacttaacta 658  Q
    ||||||||||| ||||||||| ||||||   ||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  50416893 atatctgataacgtgacatggctgtgtcatttattattttagtgttatattgatgtgaaagctagcatctaacttaacta 50416814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 392 - 472
Target Start/End: Complemental strand, 42614360 - 42614280
Alignment:
Q  392 gcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaa 472  Q
    ||||||||||||| |||||||  ||| |||  |||||||  ||||||||||||||||| | ||| || |||||||||||||    
T  42614360 gcgaccttcgttctcaaattttcgaagaataacaatgtttcgtaatttgaacatctcttctttaaagtaaatttttaaaaa 42614280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 424 - 485
Target Start/End: Original strand, 41053754 - 41053816
Alignment:
Q  424 caatgttctgtaatttgaacatctctccattagagcaaa-tttttaaaaagtacgtaattcaa 485  Q
    |||||||| |||||||||||||||| |  |||||||||| |||||||||| || |||||||||    
T  41053754 caatgttccgtaatttgaacatctcacatttagagcaaattttttaaaaaatatgtaattcaa 41053816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 2e-57; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 81 - 214
Target Start/End: Original strand, 37221990 - 37222123
Alignment:
Q  81 ccatcgaaggatcaagatgtttcactataatgggtcattgtacttcaagcagatgtttgacaagttataccaggtcagtagtatctcgaactcttgctga 180  Q
    |||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37221990 ccattgaaagatcaagatttttcactataatgggtcattgtacttcaagcagatgtttgacaagttataccaggtcagtagtatctcgaactcttgctga 37222089  T
Q  181 ttattgtttttgtatatcctttccgcagatgtca 214  Q
    | |||||||||||||||||||| |||||||||||    
T  37222090 taattgtttttgtatatccttttcgcagatgtca 37222123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 375 - 484
Target Start/End: Complemental strand, 25123571 - 25123459
Alignment:
Q  375 acaaatattcggattatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaattttt---aaaa 471  Q
    |||||| |||||||||||| |||||||||| ||| |||| ||| |||| |||||||| ||||||||||||||||||  || ||||||||||||   ||||    
T  25123571 acaaatgttcggattatgcaaccttcgttctcaagtttacgaagaatgacaatgttccgtaatttgaacatctctcatttggagcaaatttttttaaaaa 25123472  T
Q  472 agtacgtaattca 484  Q
    | |||||||||||    
T  25123471 aatacgtaattca 25123459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 394 - 485
Target Start/End: Complemental strand, 45003783 - 45003691
Alignment:
Q  394 gaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttt-taaaaagtacgtaattcaa 485  Q
    ||||||||||| |||||||||||| || | |||| ||| ||||||||||||||| ||| ||||||||||||||  ||||| ||||||||||||    
T  45003783 gaccttcgttctcaaatttatgaagaacgacaatattccgtaatttgaacatctttcctttagagcaaattttaaaaaaaatacgtaattcaa 45003691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 406 - 472
Target Start/End: Complemental strand, 15084409 - 15084343
Alignment:
Q  406 caaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaa 472  Q
    |||||||| ||| ||| ||||||||| ||||||||||||| ||||| |||||| ||| |||||||||    
T  15084409 caaatttacgaagaatagcaatgttccgtaatttgaacatatctcctttagagtaaaattttaaaaa 15084343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 395 - 447
Target Start/End: Original strand, 44800576 - 44800628
Alignment:
Q  395 accttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatct 447  Q
    |||||||||| |||||||| ||| ||| ||||||||  |||||||||||||||    
T  44800576 accttcgttctcaaatttacgaagaatagcaatgtttcgtaatttgaacatct 44800628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 5e-55; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 81 - 202
Target Start/End: Complemental strand, 34230240 - 34230119
Alignment:
Q  81 ccatcgaaggatcaagatgtttcactataatgggtcattgtacttcaagcagatgtttgacaagttataccaggtcagtagtatctcgaactcttgctga 180  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34230240 ccattgaaggatcaagatttttcactataatgggtcattgtacttcaagcagatgtttgacaagttataccaggtcagtagtatctcgaactcttgctga 34230141  T
Q  181 ttattgtttttgtatatccttt 202  Q
    |||||||||||||| |||||||    
T  34230140 ttattgtttttgtacatccttt 34230119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 394 - 485
Target Start/End: Original strand, 5482954 - 5483046
Alignment:
Q  394 gaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaattttt-aaaaagtacgtaattcaa 485  Q
    ||||||||||| |||||||||||| || | |||| ||| ||||||||||||||| ||| ||||||||||||||| ||||| ||||||||||||    
T  5482954 gaccttcgttctcaaatttatgaagaacgacaatattccgtaatttgaacatctttcctttagagcaaatttttaaaaaaatacgtaattcaa 5483046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 394 - 485
Target Start/End: Original strand, 1694811 - 1694903
Alignment:
Q  394 gaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaag-tacgtaattcaa 485  Q
    ||||||||||| |||||||| ||| ||| ||||||||| || |||||||||| ||||| ||||||||| ||||| ||||| | ||||||||||    
T  1694811 gaccttcgttctcaaatttacgaagaatagcaatgttccgtgatttgaacatatctcctttagagcaatttttttaaaagatgcgtaattcaa 1694903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 393 - 472
Target Start/End: Complemental strand, 36678851 - 36678774
Alignment:
Q  393 cgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaa 472  Q
    |||||||||||| |||||||| ||||||| |||||||| |||||||| |||||||||   |||||| |||||||||||||    
T  36678851 cgaccttcgttctcaaatttacgaaaaatagcaatgttttgtaatttaaacatctct--tttagagtaaatttttaaaaa 36678774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 408 - 472
Target Start/End: Complemental strand, 1967531 - 1967467
Alignment:
Q  408 aatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaa 472  Q
    |||||| ||| |||| |||||||| ||||||||||||| ||||  ||| ||||||||||||||||    
T  1967531 aatttacgaagaatgacaatgttccgtaatttgaacatttctcttttaaagcaaatttttaaaaa 1967467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 103; Significance: 7e-51; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 289 - 467
Target Start/End: Original strand, 12729 - 12907
Alignment:
Q  289 catctatatttatgctgcagtacattatgtatgtaatgacaataattgttatgctatcttttatgccatgttttagaccatgcatcacaaatattcggat 388  Q
    |||||| |||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||  ||||| ||||||||||||||||||||||    
T  12729 catctacatttctgctgcagtacattatgtatgtaatgacaatgattgttatgttatcttttatgccatgccttagatcatgcatcacaaatattcggat 12828  T
Q  389 tatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaattttt 467  Q
    ||||||||||||||||  ||||||| ||| ||||||||| ||   | |||||||||||||||| |||||| || |||||    
T  12829 tatgcgaccttcgttcttaaatttacgaagaatggcaatatttcctcatttgaacatctctcctttagagtaatttttt 12907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 7e-48; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 81 - 198
Target Start/End: Original strand, 30339685 - 30339802
Alignment:
Q  81 ccatcgaaggatcaagatgtttcactataatgggtcattgtacttcaagcagatgtttgacaagttataccaggtcagtagtatctcgaactcttgctga 180  Q
    |||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  30339685 ccattgaaggatcaagttttttcactataatgggtcattgtacttcaagcagatgtttgacaagttataacaggtcagtagtatctcaaactcttgctga 30339784  T
Q  181 ttattgtttttgtatatc 198  Q
    ||||||||||||||||||    
T  30339785 ttattgtttttgtatatc 30339802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 287 - 457
Target Start/End: Complemental strand, 24848127 - 24847957
Alignment:
Q  287 agcatctatatttatgctgcagtacattatgtatgtaatgacaataattgttatgctatcttttatgccatgttttagaccatgcatcacaaatattcgg 386  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||  |||||||| ||||||| |||  |||  ||||||||||||||  ||||||||||    
T  24848127 agcatctatatttgtgctgcagtacgttatgtatgtaatgacaatggttgttatgttatctttgatgttatgccttagaccatgcatcgtaaatattcgg 24848028  T
Q  387 attatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattaga 457  Q
    |||||||||||||||||| |||||||| ||| |||| ||||||| | |||||||||||||||||| |||||    
T  24848027 attatgcgaccttcgttctcaaatttacgaagaatgacaatgttttataatttgaacatctctcctttaga 24847957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 289 - 410
Target Start/End: Original strand, 30344377 - 30344498
Alignment:
Q  289 catctatatttatgctgcagtacattatgtatgtaatgacaataattgttatgctatcttttatgccatgttttagaccatgcatcacaaatattcggat 388  Q
    ||||||||||| || || ||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30344377 catctatatttctgttgtagtacattatgtacgcaatgacaataattgttatgctatcttttatgccatgtcttagaccatgcatcacaaatattcggat 30344476  T
Q  389 tatgcgaccttcgttcccaaat 410  Q
    |||| ||||||| ||| |||||    
T  30344477 tatgtgaccttcattcacaaat 30344498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 373 - 485
Target Start/End: Complemental strand, 28940856 - 28940743
Alignment:
Q  373 tcacaaatattcggattatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaa-tttttaaaa 471  Q
    |||||||||||| ||||||| |||||| |||| ||| |||| ||| |||| |||||||||||||||||||||||||||| ||||| |||| |||||||||    
T  28940856 tcacaaatattcagattatgggacctttgttctcaagtttacgaagaatgacaatgttctgtaatttgaacatctctcctttagaacaaattttttaaaa 28940757  T
Q  472 agtacgtaattcaa 485  Q
    ||||||||||||||    
T  28940756 agtacgtaattcaa 28940743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 394 - 485
Target Start/End: Complemental strand, 2680357 - 2680265
Alignment:
Q  394 gaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaattttta-aaaagtacgtaattcaa 485  Q
    ||||||||||| |||||||||||| || | |||| ||| ||||||||||||||| ||| |||||||||||||||| |||| ||||||||||||    
T  2680357 gaccttcgttctcaaatttatgaagaacgacaatattccgtaatttgaacatctttcctttagagcaaatttttaaaaaaatacgtaattcaa 2680265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 430 - 485
Target Start/End: Original strand, 30344500 - 30344557
Alignment:
Q  430 tctgtaatttgaacatctctccattagagcaaa--tttttaaaaagtacgtaattcaa 485  Q
    |||||||||||||||||||||| ||||||| ||  ||||| |||| ||||||||||||    
T  30344500 tctgtaatttgaacatctctcctttagagctaatttttttgaaaaatacgtaattcaa 30344557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 4e-43; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 289 - 410
Target Start/End: Complemental strand, 18985400 - 18985279
Alignment:
Q  289 catctatatttatgctgcagtacattatgtatgtaatgacaataattgttatgctatcttttatgccatgttttagaccatgcatcacaaatattcggat 388  Q
    ||||||||||| ||||| ||||||||||||| | ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  18985400 catctatatttctgctggagtacattatgtacgcaatgacaataattgttatgctatctttaatgccatgtcttagaccatgcatcacaaatattcggat 18985301  T
Q  389 tatgcgaccttcgttcccaaat 410  Q
    |||| ||||||||||| |||||    
T  18985300 tatgtgaccttcgttcacaaat 18985279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 361 - 457
Target Start/End: Complemental strand, 8746847 - 8746751
Alignment:
Q  361 ttagaccatgcatcacaaatattcggattatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattaga 457  Q
    ||||||||| ||||  |||||||| |||||||||||||| |||| |||||||| ||| |||| ||||||||  ||||||||||||| |||| |||||    
T  8746847 ttagaccatacatcgtaaatattcagattatgcgacctttgttctcaaatttacgaagaatgacaatgttccataatttgaacatccctcctttaga 8746751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 392 - 485
Target Start/End: Complemental strand, 2627763 - 2627674
Alignment:
Q  392 gcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaagtacgtaattcaa 485  Q
    ||||||||||||| |||||||| ||| ||| |||||||| |||||||||||||||||||   |||||||| ||||| |||| ||||||||||||    
T  2627763 gcgaccttcgttctcaaatttacgaagaatagcaatgttatgtaatttgaacatctctc---tagagcaatttttttaaaa-tacgtaattcaa 2627674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 426 - 485
Target Start/End: Complemental strand, 11681760 - 11681699
Alignment:
Q  426 atgttctgtaatttgaacatctctccattagagcaaattttt--aaaaagtacgtaattcaa 485  Q
    |||||||||||||||||||||||||| |||||| || |||||  ||||||||||||||||||    
T  11681760 atgttctgtaatttgaacatctctcctttagagtaatttttttaaaaaagtacgtaattcaa 11681699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 393 - 485
Target Start/End: Complemental strand, 22978435 - 22978347
Alignment:
Q  393 cgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaagtacgtaattcaa 485  Q
    |||||||||||| |||||||| ||| ||   ||||||| |||||||||||||||||||   |||||||| ||||| |||| ||||||||||||    
T  22978435 cgaccttcgttctcaaatttacgaagaacaacaatgttatgtaatttgaacatctctc---tagagcaatttttttaaaa-tacgtaattcaa 22978347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 393 - 485
Target Start/End: Original strand, 23809968 - 23810056
Alignment:
Q  393 cgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaagtacgtaattcaa 485  Q
    |||||||||||| |||||||| ||| ||   ||||||| |||||||||||||||||||   |||||||| ||||| |||| ||||||||||||    
T  23809968 cgaccttcgttctcaaatttacgaagaacaacaatgttatgtaatttgaacatctctc---tagagcaatttttttaaaa-tacgtaattcaa 23810056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 390 - 472
Target Start/End: Original strand, 34218741 - 34218820
Alignment:
Q  390 atgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaa 472  Q
    ||||||||||||||  | |||||||||| |||  |||| ||| ||||||||||||||||||| |   ||||||||||||||||    
T  34218741 atgcgaccttcgttttcgaatttatgaagaattacaatattccgtaatttgaacatctctcctt---agcaaatttttaaaaa 34218820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 387 - 458
Target Start/End: Original strand, 22721094 - 22721165
Alignment:
Q  387 attatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagag 458  Q
    ||||||| |||| ||||| |||||| | ||| |||||||||||   ||||||||||||||||||| ||||||    
T  22721094 attatgcaacctacgttctcaaattaacgaagaatggcaatgtcgcgtaatttgaacatctctcctttagag 22721165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 406 - 485
Target Start/End: Original strand, 1363155 - 1363235
Alignment:
Q  406 caaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagag-caaatttttaaaaagtacgtaattcaa 485  Q
    |||||||| ||| |||  |||||||| ||||||||||||| ||||| ||||||  ||| ||||||||| || |||||||||    
T  1363155 caaatttacgaagaataacaatgttccgtaatttgaacatatctcctttagagtaaaaattttaaaaaatatgtaattcaa 1363235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 392 - 472
Target Start/End: Original strand, 11168835 - 11168915
Alignment:
Q  392 gcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaa 472  Q
    ||||||||||||| |||| ||| ||| |||   ||||||| |||||||||||||| |||  |||||| || ||||||||||    
T  11168835 gcgaccttcgttctcaaaattacgaagaataagaatgttccgtaatttgaacatccctcttttagagaaattttttaaaaa 11168915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 289 - 341
Target Start/End: Complemental strand, 11682702 - 11682650
Alignment:
Q  289 catctatatttatgctgcagtacattatgtatgtaatgacaataattgttatg 341  Q
    ||||||||| | || |||||||||||||||||| |||||||||| || |||||    
T  11682702 catctatatgtgtgttgcagtacattatgtatgaaatgacaatagttattatg 11682650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 6e-39; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 289 - 427
Target Start/End: Complemental strand, 25350714 - 25350576
Alignment:
Q  289 catctatatttatgctgcagtacattatgtatgtaatgacaataattgttatgctatcttttatgccatgttttagaccatgcatcacaaatattcggat 388  Q
    ||||||||||||||||| |||||||||| |||||||| ||||| ||||||||| ||| ||||||| ||||  ||||||||||||||||||||||||||||    
T  25350714 catctatatttatgctgtagtacattatctatgtaataacaatgattgttatgttattttttatgtcatgccttagaccatgcatcacaaatattcggat 25350615  T
Q  389 tatgcgaccttcgttcccaaatttatgaaaaatggcaat 427  Q
    |||||| ||||||||| |||||||| ||| |||| ||||    
T  25350614 tatgcgtccttcgttctcaaatttacgaagaatgacaat 25350576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 289 - 427
Target Start/End: Complemental strand, 25356408 - 25356270
Alignment:
Q  289 catctatatttatgctgcagtacattatgtatgtaatgacaataattgttatgctatcttttatgccatgttttagaccatgcatcacaaatattcggat 388  Q
    ||||||||||||||||| |||||||||| |||||||| ||||| ||||||||| ||| ||||||| ||||  ||||||||||||||||||||||||||||    
T  25356408 catctatatttatgctgtagtacattatctatgtaataacaatgattgttatgttattttttatgtcatgccttagaccatgcatcacaaatattcggat 25356309  T
Q  389 tatgcgaccttcgttcccaaatttatgaaaaatggcaat 427  Q
    |||||| ||||||||| |||||||| ||| |||| ||||    
T  25356308 tatgcgtccttcgttctcaaatttacgaagaatgacaat 25356270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 407 - 472
Target Start/End: Complemental strand, 33097944 - 33097879
Alignment:
Q  407 aaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaa 472  Q
    ||||||| ||| |||| |||||||| ||||||||||||||||||| ||||||||||||||| ||||    
T  33097944 aaatttacgaagaatgacaatgttccgtaatttgaacatctctcctttagagcaaattttttaaaa 33097879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 387 - 482
Target Start/End: Original strand, 25731043 - 25731139
Alignment:
Q  387 attatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaa-atttttaaaaagtacgtaatt 482  Q
    ||||||| |||||||||| |||||||| ||| | || ||||||   ||||||||||||||||||| |||||||||  |||||||||| |||||||||    
T  25731043 attatgcaaccttcgttctcaaatttacgaagactgacaatgtcgcgtaatttgaacatctctcctttagagcaatttttttaaaaaatacgtaatt 25731139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 407 - 467
Target Start/End: Original strand, 31299417 - 31299477
Alignment:
Q  407 aaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaattttt 467  Q
    ||||||||||| |||| |||||||| ||||||| ||||||||||| ||||| |||||||||    
T  31299417 aaatttatgaagaatgacaatgttccgtaattttaacatctctcctttagaacaaattttt 31299477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 424 - 485
Target Start/End: Original strand, 33105296 - 33105358
Alignment:
Q  424 caatgttctgtaatttgaacatctctccattagagcaaattttt-aaaaagtacgtaattcaa 485  Q
    |||||||| ||||||||||||||||||  || |||||||||||| ||||| ||||||||||||    
T  33105296 caatgttccgtaatttgaacatctctcttttggagcaaatttttaaaaaaatacgtaattcaa 33105358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 406 - 458
Target Start/End: Complemental strand, 4479019 - 4478967
Alignment:
Q  406 caaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagag 458  Q
    |||||||| ||| | | |||||||||||||||||||| |||||||| ||||||    
T  4479019 caaatttacgaagattagcaatgttctgtaatttgaatatctctcctttagag 4478967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 406 - 483
Target Start/End: Original strand, 21895080 - 21895159
Alignment:
Q  406 caaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaa--tttttaaaaagtacgtaattc 483  Q
    |||||||| ||| ||| | ||||||| ||||||||||||| ||||| |||||| |||  |||||||||| || |||||||    
T  21895080 caaatttacgaagaatagtaatgttccgtaatttgaacatatctcctttagagtaaaattttttaaaaaatatgtaattc 21895159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 5e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 387 - 485
Target Start/End: Original strand, 29693301 - 29693400
Alignment:
Q  387 attatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaa-tttttaaaaagtacgtaattcaa 485  Q
    ||||||| |||||||||| |||||||| ||| |||||||||||   ||||||||||||||||| | ||||| |||| |||||||||| ||||||||||||    
T  29693301 attatgcaaccttcgttctcaaatttacgaagaatggcaatgtcgcgtaatttgaacatctcttctttagaacaaattttttaaaaaatacgtaattcaa 29693400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 392 - 485
Target Start/End: Complemental strand, 52037514 - 52037420
Alignment:
Q  392 gcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaa-atttttaaaaagtacgtaattcaa 485  Q
    ||||||||||||| |||| ||| ||| ||| ||||||||| ||||||||||||||||||| |||||| ||  |||||||||| ||| ||||||||    
T  52037514 gcgaccttcgttctcaaaattacgaagaatagcaatgttccgtaatttgaacatctctcctttagaggaatttttttaaaaaatacataattcaa 52037420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 392 - 472
Target Start/End: Original strand, 13624230 - 13624309
Alignment:
Q  392 gcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaa 472  Q
    ||||||||||||| |||| ||| ||| ||| | ||||||| ||||||||||||||||||| |||||| |||||||||||||    
T  13624230 gcgaccttcgttctcaaaattacgaagaataggaatgttccgtaatttgaacatctctcctttagag-aaatttttaaaaa 13624309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1993 times since January 2019
Visitors: 3810