View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0614_low_5 (Length: 445)
Name: NF0614_low_5
Description: NF0614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0614_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 29 - 434
Target Start/End: Original strand, 39372533 - 39372940
Alignment:
| Q |
29 |
agaaacttccaaatgcttcaacatctcaacttgctactagtacaaaaactgatttttaacatgtttttaaggtcataagtctatttcttaaccggtgtaa |
128 |
Q |
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| T |
39372533 |
agaaacttccaaatgcttcaacatctcaacttgctactagtacaaaaactgatttttaacatgtttttaaggtcataagtctatttcttaaccggtgtaa |
39372632 |
T |
|
| Q |
129 |
gatcttccgttttaatatatgaaattttttaggacgatttttcaactggattaaaataatatggttcaatccggttgagaattgagataaacattcatct |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39372633 |
gatcttccgttttaatatatgaaattttttaggacgatttttcaactggattaaaataatatggttcaatccggttgagaattgagataaacattcatct |
39372732 |
T |
|
| Q |
229 |
taacatttttatcatcaacgcaatattgtgttacattttaagttggttgtgagaaacaaatataaacttcgtgttacattattttatgtcgccttttgcc |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39372733 |
taacatttttatcatcaacgcaatattgtgttacattttaagttggttgtgagaaacaaatataaacttcgtgttacattattttatgtcgccttttgcc |
39372832 |
T |
|
| Q |
329 |
aaaaaccagagagaattgagatataataccaaggctaaagtatactttttat--tctctataatttacaaaatgtttgttatggtcttttatcgtctttt |
426 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
39372833 |
aaaaaccagagagaattgagatataataccaaggctaaagtatactttttattctctctataatttacaaaatgtttgttatgatcttttatcgtctttt |
39372932 |
T |
|
| Q |
427 |
ttattcat |
434 |
Q |
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|||||||| |
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| T |
39372933 |
ttattcat |
39372940 |
T |
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