View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0614_low_6 (Length: 432)

Name: NF0614_low_6
Description: NF0614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0614_low_6
NF0614_low_6
[»] chr5 (1 HSPs)
chr5 (30-421)||(39952157-39952548)
[»] chr8 (1 HSPs)
chr8 (30-339)||(30339493-30339802)
[»] chr4 (3 HSPs)
chr4 (30-175)||(34230259-34230404)
chr4 (222-343)||(34230119-34230240)
chr4 (37-85)||(28546919-28546967)
[»] chr2 (1 HSPs)
chr2 (222-355)||(37221990-37222123)


Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 30 - 421
Target Start/End: Original strand, 39952157 - 39952548
Alignment:
Q  30 ataacttggctgagagtaatttcgctgaagcaattcaaatcatctcattcaacaattatgaaaagtgattaatttgatgacatttatgaggtgatagatg 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39952157 ataacttggctgagagtaatttcgctgaagcaattcaaatcatctcattcaacaattatgaaaagtgattaatttgatgacatttatgaggtgatagatg 39952256  T
Q  130 aatcagaaaacatgctatgggagaatattttgctgatggtcatacaatttcatccactaagaaagcannnnnnnnnnnnnnnnnnnnnnnnnccatcgaa 229  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||                         |||| |||    
T  39952257 aatcagaaaacatgctatgggagaatattttgctgatggtcatataatttcatccactaagaaagcatttttcgttttattttgctctttttccattgaa 39952356  T
Q  230 ggatcaagatgtttcactataatgggtcattgtacttcaagcagatgtttgacaagttataccaggtcagtagtatctcgaactcttgctgattattgtt 329  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39952357 ggatcaagatgtttcactataacgggtcattgtacttcaagcagatgtttgacaagttataccaggtcagtagtatctcgaactcttgctgattattgtt 39952456  T
Q  330 tttgtatatcctttccgcagatgtcaatggatatggtgtgagtagattgaactctggttttgttggtgctctaatttcgctaatcacttcat 421  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  39952457 tttgtatatcctttccgcagatgtcaatggatatggtgtgagtagattgaactctggttttgttggtgctttaatttcgctaatcacttcat 39952548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 30 - 339
Target Start/End: Original strand, 30339493 - 30339802
Alignment:
Q  30 ataacttggctgagagtaatttcgctgaagcaattcaaatcatctcattcaacaattatgaaaagtgattaatttgatgacatttatgaggtgatagatg 129  Q
    ||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30339493 ataacttggctgagagtaatttctctcaagcaattcaaatcatttcattcaacaattatgaaaagtgattaatttgatgacatttatgaggtgatagatg 30339592  T
Q  130 aatcagaaaacatgctatgggagaatattttgctgatggtcatacaatttcatccactaagaaagcannnnnnnnnnnnnnnnnnnnnnnnnccatcgaa 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                         |||| |||    
T  30339593 aatcagaaaacatgctatgggagaatattttgctgatggtcatacaatttcatccactaagaaagcatttttcatttgattttgttctttttccattgaa 30339692  T
Q  230 ggatcaagatgtttcactataatgggtcattgtacttcaagcagatgtttgacaagttataccaggtcagtagtatctcgaactcttgctgattattgtt 329  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  30339693 ggatcaagttttttcactataatgggtcattgtacttcaagcagatgtttgacaagttataacaggtcagtagtatctcaaactcttgctgattattgtt 30339792  T
Q  330 tttgtatatc 339  Q
    ||||||||||    
T  30339793 tttgtatatc 30339802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 30 - 175
Target Start/End: Complemental strand, 34230404 - 34230259
Alignment:
Q  30 ataacttggctgagagtaatttcgctgaagcaattcaaatcatctcattcaacaattatgaaaagtgattaatttgatgacatttatgaggtgatagatg 129  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||| ||||||||| | ||||||||||||||||||||||||||||    
T  34230404 ataacttggctgagagtaatttctctcaagcaattcaaatcatctcattgaacaattattaaaagtgataagtttgatgacatttatgaggtgatagatg 34230305  T
Q  130 aatcagaaaacatgctatgggagaatattttgctgatggtcataca 175  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||    
T  34230304 aatcagaaaacatactataggagaatattttgctgatggtcataca 34230259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 222 - 343
Target Start/End: Complemental strand, 34230240 - 34230119
Alignment:
Q  222 ccatcgaaggatcaagatgtttcactataatgggtcattgtacttcaagcagatgtttgacaagttataccaggtcagtagtatctcgaactcttgctga 321  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34230240 ccattgaaggatcaagatttttcactataatgggtcattgtacttcaagcagatgtttgacaagttataccaggtcagtagtatctcgaactcttgctga 34230141  T
Q  322 ttattgtttttgtatatccttt 343  Q
    |||||||||||||| |||||||    
T  34230140 ttattgtttttgtacatccttt 34230119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 28546967 - 28546919
Alignment:
Q  37 ggctgagagtaatttcgctgaagcaattcaaatcatctcattcaacaat 85  Q
    |||||||||||||||  || |||||||||||||||||||||| ||||||    
T  28546967 ggctgagagtaatttttctcaagcaattcaaatcatctcatttaacaat 28546919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 222 - 355
Target Start/End: Original strand, 37221990 - 37222123
Alignment:
Q  222 ccatcgaaggatcaagatgtttcactataatgggtcattgtacttcaagcagatgtttgacaagttataccaggtcagtagtatctcgaactcttgctga 321  Q
    |||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37221990 ccattgaaagatcaagatttttcactataatgggtcattgtacttcaagcagatgtttgacaagttataccaggtcagtagtatctcgaactcttgctga 37222089  T
Q  322 ttattgtttttgtatatcctttccgcagatgtca 355  Q
    | |||||||||||||||||||| |||||||||||    
T  37222090 taattgtttttgtatatccttttcgcagatgtca 37222123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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