View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0615_high_1 (Length: 251)

Name: NF0615_high_1
Description: NF0615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0615_high_1
NF0615_high_1
[»] chr4 (21 HSPs)
chr4 (18-251)||(2293340-2293572)
chr4 (56-251)||(36604694-36604888)
chr4 (18-232)||(43894193-43894405)
chr4 (41-246)||(29687817-29688020)
chr4 (18-211)||(38418833-38419024)
chr4 (40-211)||(39592128-39592296)
chr4 (95-218)||(6616103-6616225)
chr4 (68-227)||(44302813-44302970)
chr4 (40-218)||(35787898-35788074)
chr4 (40-218)||(11094628-11094802)
chr4 (51-218)||(47668453-47668611)
chr4 (153-218)||(86905-86970)
chr4 (40-154)||(52980150-52980262)
chr4 (78-135)||(36604583-36604639)
chr4 (197-251)||(2292219-2292273)
chr4 (114-202)||(26393038-26393125)
chr4 (132-218)||(6140288-6140374)
chr4 (172-218)||(17319144-17319190)
chr4 (114-200)||(29663762-29663847)
chr4 (108-211)||(34438515-34438616)
chr4 (114-218)||(56000389-56000492)
[»] chr1 (23 HSPs)
chr1 (18-251)||(51218781-51219013)
chr1 (42-218)||(26055987-26056161)
chr1 (40-250)||(30551427-30551635)
chr1 (40-218)||(37624408-37624584)
chr1 (40-228)||(50678455-50678640)
chr1 (40-250)||(27689353-27689565)
chr1 (56-211)||(9633884-9634037)
chr1 (40-218)||(23081964-23082140)
chr1 (53-218)||(22766670-22766834)
chr1 (137-249)||(44977292-44977404)
chr1 (25-211)||(14764338-14764522)
chr1 (40-217)||(52742814-52742989)
chr1 (121-211)||(49141414-49141503)
chr1 (197-251)||(51217687-51217741)
chr1 (114-208)||(51726754-51726848)
chr1 (131-218)||(14169721-14169808)
chr1 (132-211)||(21277103-21277182)
chr1 (199-250)||(25889487-25889538)
chr1 (195-250)||(34654331-34654386)
chr1 (199-250)||(48935105-48935156)
chr1 (137-218)||(8092700-8092781)
chr1 (108-211)||(19466111-19466212)
chr1 (194-250)||(35683125-35683181)
[»] chr8 (30 HSPs)
chr8 (23-251)||(44103115-44103343)
chr8 (18-251)||(13513489-13513720)
chr8 (18-251)||(13603022-13603253)
chr8 (25-251)||(21670133-21670357)
chr8 (23-251)||(21961892-21962118)
chr8 (18-251)||(39325649-39325881)
chr8 (41-251)||(10052173-10052381)
chr8 (40-250)||(13363416-13363624)
chr8 (40-218)||(36756166-36756343)
chr8 (81-220)||(37276122-37276259)
chr8 (40-218)||(7486179-7486355)
chr8 (41-218)||(39546516-39546691)
chr8 (52-218)||(117150-117313)
chr8 (95-218)||(21267234-21267356)
chr8 (150-218)||(36938783-36938851)
chr8 (51-210)||(45541594-45541746)
chr8 (197-251)||(13514858-13514912)
chr8 (197-251)||(13604391-13604445)
chr8 (138-218)||(13366984-13367064)
chr8 (140-211)||(12281716-12281787)
chr8 (101-206)||(2421191-2421295)
chr8 (137-218)||(19913594-19913675)
chr8 (132-218)||(35944010-35944096)
chr8 (132-218)||(36070280-36070366)
chr8 (114-211)||(44606248-44606344)
chr8 (112-218)||(8095448-8095553)
chr8 (197-243)||(39323864-39323910)
chr8 (197-251)||(44102018-44102072)
chr8 (114-218)||(8395097-8395200)
chr8 (114-202)||(24069357-24069444)
[»] chr7 (16 HSPs)
chr7 (18-251)||(24494865-24495098)
chr7 (63-211)||(14108932-14109078)
chr7 (63-211)||(14418889-14419035)
chr7 (40-201)||(4167570-4167729)
chr7 (18-166)||(35315053-35315199)
chr7 (40-218)||(38406120-38406295)
chr7 (58-206)||(19848690-19848836)
chr7 (174-211)||(4857310-4857347)
chr7 (137-218)||(46458646-46458727)
chr7 (58-206)||(18801329-18801475)
chr7 (114-218)||(25154847-25154950)
chr7 (114-251)||(44113498-44113633)
chr7 (181-250)||(13286971-13287040)
chr7 (150-218)||(26406227-26406295)
chr7 (137-205)||(40930533-40930601)
chr7 (197-249)||(44114649-44114701)
[»] chr3 (19 HSPs)
chr3 (18-250)||(17349918-17350148)
chr3 (18-250)||(39133087-39133317)
chr3 (56-251)||(7483379-7483572)
chr3 (42-218)||(11219532-11219706)
chr3 (40-218)||(34902832-34903008)
chr3 (40-218)||(53808420-53808596)
chr3 (40-218)||(47765540-47765717)
chr3 (40-227)||(32979181-32979366)
chr3 (18-251)||(31638187-31638409)
chr3 (40-218)||(8371322-8371498)
chr3 (71-135)||(7483262-7483325)
chr3 (107-218)||(12062288-12062398)
chr3 (153-218)||(19622107-19622172)
chr3 (89-164)||(20314647-20314721)
chr3 (132-218)||(23559921-23560007)
chr3 (164-206)||(24753462-24753504)
chr3 (197-250)||(17345381-17345433)
chr3 (117-206)||(48867344-48867432)
chr3 (194-250)||(32974213-32974269)
[»] chr2 (25 HSPs)
chr2 (18-251)||(4512175-4512406)
chr2 (18-243)||(14714569-14714792)
chr2 (41-218)||(23177776-23177951)
chr2 (41-218)||(23589033-23589208)
chr2 (107-251)||(26205082-26205225)
chr2 (42-218)||(12852988-12853162)
chr2 (55-217)||(3528117-3528278)
chr2 (42-193)||(6708819-6708968)
chr2 (40-218)||(41296292-41296468)
chr2 (40-228)||(21010336-21010522)
chr2 (112-201)||(3532313-3532401)
chr2 (68-201)||(7983561-7983692)
chr2 (95-218)||(29424505-29424626)
chr2 (18-77)||(14714901-14714960)
chr2 (138-209)||(45047453-45047524)
chr2 (132-209)||(25570798-25570875)
chr2 (137-227)||(37868973-37869062)
chr2 (138-218)||(14509311-14509391)
chr2 (18-62)||(26205230-26205274)
chr2 (199-250)||(2305610-2305661)
chr2 (181-251)||(8537081-8537151)
chr2 (137-211)||(10367348-10367422)
chr2 (112-161)||(34512974-34513022)
chr2 (194-250)||(2306651-2306707)
chr2 (174-218)||(7490165-7490209)
[»] scaffold0015 (1 HSPs)
scaffold0015 (23-251)||(207619-207845)
[»] scaffold0084 (2 HSPs)
scaffold0084 (18-237)||(13020-13237)
scaffold0084 (197-250)||(11776-11829)
[»] chr5 (7 HSPs)
chr5 (40-250)||(21387707-21387915)
chr5 (58-228)||(18693790-18693957)
chr5 (63-201)||(7426760-7426896)
chr5 (132-211)||(2167443-2167522)
chr5 (132-211)||(5383051-5383130)
chr5 (132-218)||(40058120-40058206)
chr5 (164-204)||(7345350-7345390)
[»] scaffold0098 (1 HSPs)
scaffold0098 (18-211)||(41017-41208)
[»] scaffold0051 (1 HSPs)
scaffold0051 (40-227)||(39739-39924)
[»] scaffold1974 (1 HSPs)
scaffold1974 (40-218)||(466-642)
[»] scaffold1878 (1 HSPs)
scaffold1878 (40-218)||(632-808)
[»] chr6 (10 HSPs)
chr6 (53-251)||(18139337-18139534)
chr6 (63-220)||(33801878-33802033)
chr6 (40-123)||(34084072-34084154)
chr6 (154-211)||(13507121-13507178)
chr6 (137-218)||(14328707-14328788)
chr6 (137-218)||(14421717-14421798)
chr6 (150-218)||(31738465-31738533)
chr6 (136-218)||(293572-293654)
chr6 (197-250)||(18773724-18773777)
chr6 (114-218)||(27440086-27440189)
[»] scaffold0290 (1 HSPs)
scaffold0290 (112-218)||(9387-9492)
[»] scaffold0025 (1 HSPs)
scaffold0025 (40-205)||(56536-56701)
[»] scaffold0045 (1 HSPs)
scaffold0045 (114-218)||(77090-77195)
[»] scaffold0122 (1 HSPs)
scaffold0122 (138-211)||(16054-16127)
[»] scaffold0046 (2 HSPs)
scaffold0046 (197-250)||(24808-24861)
scaffold0046 (23-74)||(23674-23725)
[»] scaffold0002 (1 HSPs)
scaffold0002 (199-250)||(458455-458506)
[»] scaffold0003 (1 HSPs)
scaffold0003 (114-218)||(47172-47275)


Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 2293340 - 2293572
Alignment:
Q  18 gaagcagaagatgaatcgattttattaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatca 117  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2293340 gaagaagaagatgaatcgattttattaggtgtgagtggttcacagtaaagtacaatagaccccacatgattcaacggtcctcttttaatgaaataaatca 2293439  T
Q  118 aatggttaaaattaaaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagacca 217  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||| |||||    
T  2293440 aatggttaaaattaaaaa-atttaataaggcatatggtggaccatctttaaatatgattcacttcagacatttgattttaaaaactaacggagaggacca 2293538  T
Q  218 ataaaggtaacagaagaagacataagggaccaat 251  Q
    ||| || | || ||||||||||||||||||||||    
T  2293539 atagagattacggaagaagacataagggaccaat 2293572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 56 - 251
Target Start/End: Original strand, 36604694 - 36604888
Alignment:
Q  56 ttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatatttaataaggcatatggt 155  Q
    ||||||||||| || |||||||||||||| |||||| ||||||||||||| |||| |||||||||||||||||||||||| | |||||||||||||||||    
T  36604694 ttcacagtaaagtataatagaccccacatgattcaatggtcctcttttaaagaaa-aaatcaaatggttaaaattaaaaaaaattaataaggcatatggt 36604792  T
Q  156 ggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaataaaggtaacagaagaagacataagggaccaat 251  Q
    || |||  ||| |||||||||||  ||||| ||||||| ||||||||||||||||| |||||| | ||||||| ||||||||||||||||||||||    
T  36604793 gggccactttttaatatggttcatcttagatatttgatattaaaaactaacggagaggaccaaaagaggtaacggaagaagacataagggaccaat 36604888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 18 - 232
Target Start/End: Complemental strand, 43894405 - 43894193
Alignment:
Q  18 gaagcagaagatgaatcgattttattaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatca 117  Q
    |||| ||||||||||| ||||||||||| ||| ||||||| ||| |||| |||||||||||| ||| |||||||| | |||||||||| |||| ||||||    
T  43894405 gaagaagaagatgaatggattttattagatgttagtggttgacactaaagtacaatagaccctacaaaattcaacagccctcttttaaagaaa-aaatca 43894307  T
Q  118 aatggttaaaattaaaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagacca 217  Q
    ||||||||| |||||||| |||||||| ||||||| |||||||||||||||||||||||||| | |||||||||||||||||||| |||||| | |||||    
T  43894306 aatggttaagattaaaaa-atttaatagggcatattgtggaccatctttaaatatggttcacctcagacatttgatgttaaaaaccaacggatatgacca 43894208  T
Q  218 ataaaggtaacagaa 232  Q
    | | |||||||||||    
T  43894207 aaagaggtaacagaa 43894193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 41 - 246
Target Start/End: Original strand, 29687817 - 29688020
Alignment:
Q  41 attaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatattt 140  Q
    ||||||||  ||||||||||| ||||||||||||||||  |||| || ||||  | ||||||||| |||| ||||||||||||||||| | |||| ||||    
T  29687817 attaggtggtagtggttcacaataaaatacaatagaccttacatgatccaacaattctcttttaaagaaa-aaatcaaatggttaaaacttaaaa-attt 29687914  T
Q  141 aataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaataaaggtaacagaagaagacat 240  Q
    |||||||  || ||||||||| ||||||||||||||| |  |||||||||||||||||||||||| ||||| |||||| | |||||||   | |||||||    
T  29687915 aataaggtttacggtggaccacctttaaatatggttcgccgtagacatttgatgttaaaaactaaaggagatgaccaaaagaggtaacgacaaaagacat 29688014  T
Q  241 aaggga 246  Q
    ||||||    
T  29688015 aaggga 29688020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 38418833 - 38419024
Alignment:
Q  18 gaagcagaagatgaatcgattttattaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatca 117  Q
    |||| ||||||||||| ||||   |||||||| ||||||||| |||||| |||||||||||| |||| ||| ||| |   | |||||| |||| ||||||    
T  38418833 gaagaagaagatgaatggattaacttaggtgttagtggttcatagtaaagtacaatagaccctacatgatttaacagctattttttaaagaaa-aaatca 38418931  T
Q  118 aatggttaaaattaaaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggaga 211  Q
    |||||||||||| ||||| ||||| ||||||||||||||||||| || |||||||||||||  ||| || ||| ||||||||||||||||||||    
T  38418932 aatggttaaaataaaaaa-atttagtaaggcatatggtggaccacctataaatatggttcatcttaaacgtttaatgttaaaaactaacggaga 38419024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 40 - 211
Target Start/End: Original strand, 39592128 - 39592296
Alignment:
Q  40 tattaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatatt 139  Q
    ||||||||||  |||||| ||| ||||||| ||||||||  |||| || ||||  ||||||||||  |||| |||||||| |||||||||| |||| |||    
T  39592128 tattaggtgttggtggtttacaataaaatataatagacct-acatgatccaacaatcctcttttatagaaa-aaatcaaaaggttaaaatttaaaa-att 39592224  T
Q  140 taataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggaga 211  Q
    |||||||| ||||| ||||||| ||||||| |||| |||| ||||||||||||||||||||| |||||||||    
T  39592225 taataaggtatatgatggaccacctttaaacatggctcaccttagacatttgatgttaaaaattaacggaga 39592296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 95 - 218
Target Start/End: Original strand, 6616103 - 6616225
Alignment:
Q  95 tcctcttttaatgaaataaatcaaatggttaaaattaaaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatg 194  Q
    ||||||||||| ||||||||||||| |||||||||| |||| |||||||||||  ||| |||||| ||||||||  || |||||| || |||||||||||    
T  6616103 tcctcttttaaagaaataaatcaaaaggttaaaatttaaaa-atttaataaggtctatagtggactatctttaatcattgttcacctttgacatttgatg 6616201  T
Q  195 ttaaaaactaacggagaagaccaa 218  Q
    ||||||||||| ||||| ||||||    
T  6616202 ttaaaaactaaaggagaggaccaa 6616225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 68 - 227
Target Start/End: Complemental strand, 44302970 - 44302813
Alignment:
Q  68 tacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatatttaataaggcatatggtggaccatcttta 167  Q
    ||||||| | || ||||||||||||  || |||||||| ||| | ||||||||||||||||||||||| |||||||| ||  ||||||| |||| |||||    
T  44302970 tacaatatatcctacataattcaacaatcatcttttaaagaa-tcaatcaaatggttaaaattaaaaa-atttaatacggtctatggtgaaccaccttta 44302873  T
Q  168 aatatggttcactttagacatttgatgttaaaaactaacggagaagaccaataaaggtaa 227  Q
    ||||| |||||| |||| | ||| |||||||||||||||||||| |||||| | ||||||    
T  44302872 aatatagttcaccttagtcttttaatgttaaaaactaacggagaggaccaaaagaggtaa 44302813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 40 - 218
Target Start/End: Complemental strand, 35788074 - 35787898
Alignment:
Q  40 tattaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatatt 139  Q
    ||||||||||  ||| || ||| |||||| ||||||||||  ||| || ||||  || ||||||||||||| || | ||| |||||||||| |||| |||    
T  35788074 tattaggtgttggtgatttacaataaaatgcaatagaccctgcatgatccaacaatcatcttttaatgaaa-aatttaaaaggttaaaatttaaaa-att 35787977  T
Q  140 taataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaa 218  Q
    |||||| |  |||||||||||| ||||||| ||| || || ||||||||||||||||||||||||||||||| ||||||    
T  35787976 taataaagtctatggtggaccacctttaaacatgatttaccttagacatttgatgttaaaaactaacggagaggaccaa 35787898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 40 - 218
Target Start/End: Complemental strand, 11094802 - 11094628
Alignment:
Q  40 tattaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatatt 139  Q
    ||||||||||  |||||| ||| ||||||||||||||||  |||| || ||||  ||||||||||| |||| |||||| | |||||| ||| |||| |||    
T  11094802 tattaggtgttggtggtttacaataaaatacaatagaccttacatgatccaacaatcctcttttaaagaaa-aaatcacaaggttaatatttaaaa-att 11094705  T
Q  140 taataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaa 218  Q
    ||||||||  ||||||| ||||  |||||| |||||  || ||||||||||||||||||||||||||| ||| ||||||    
T  11094704 taataaggtctatggtgaaccacatttaaacatggt--accttagacatttgatgttaaaaactaacgaagaggaccaa 11094628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 51 - 218
Target Start/End: Original strand, 47668453 - 47668611
Alignment:
Q  51 agtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatatttaataaggcat 150  Q
    ||||||||||| ||||||||||||||||| |||| ||  |||  ||||||||||| |||| |||||||| |||||||||| ||||         |||  |    
T  47668453 agtggttcacactaaaatacaatagaccctacatgatcgaacaatcctcttttaaagaaaaaaatcaaaaggttaaaatttaaaa---------aggtct 47668543  T
Q  151 atggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaa 218  Q
    ||||||||||||||||||  |||||| || ||||| |||||||||||||||||||| |||| ||||||    
T  47668544 atggtggaccatctttaaccatggtttaccttagatatttgatgttaaaaactaacagagaggaccaa 47668611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 153 - 218
Target Start/End: Complemental strand, 86970 - 86905
Alignment:
Q  153 ggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaa 218  Q
    ||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  86970 ggtggaccacctttaaacatggttcaccttagacatttgatgttaaaaactaacggagaagaccaa 86905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 154
Target Start/End: Complemental strand, 52980262 - 52980150
Alignment:
Q  40 tattaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatatt 139  Q
    ||||||||||  |||||| ||| ||||||||||||||| | ||||||| ||||  ||||||||||| |||| |||| ||| |||||||||| |||| |||    
T  52980262 tattaggtgttggtggtttacaataaaatacaatagactctacataatccaacaatcctcttttaaagaaa-aaattaaaaggttaaaatttaaaa-att 52980165  T
Q  140 taataaggcatatgg 154  Q
    |||||||| ||||||    
T  52980164 taataaggtatatgg 52980150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 36604583 - 36604639
Alignment:
Q  78 cccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaa 135  Q
    ||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  36604583 cccacatgattcaacggtcctcttttaacgaaa-aaatcaaatggttaaaattaaaaa 36604639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 2292273 - 2292219
Alignment:
Q  197 aaaaactaacggagaagaccaataaaggtaacagaagaagacataagggaccaat 251  Q
    |||||||||| |||| |||||| | ||||||| ||||||||||||||||||||||    
T  2292273 aaaaactaacagagaggaccaagagaggtaacggaagaagacataagggaccaat 2292219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 202
Target Start/End: Original strand, 26393038 - 26393125
Alignment:
Q  114 atcaaatggttaaaattaaaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaac 202  Q
    |||||||||||||||||||||| | ||| |||||  |||||||||||| || |||   |||||||| ||||||||||  ||||||||||    
T  26393038 atcaaatggttaaaattaaaaa-acttagtaaggtctatggtggaccacctataatgttggttcaccttagacatttagtgttaaaaac 26393125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 218
Target Start/End: Original strand, 6140288 - 6140374
Alignment:
Q  132 aaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaa 218  Q
    |||| |||||||||||  |||||||||| | || ||||  |||||||| ||||| |||| | |||||||||||||||| | ||||||    
T  6140288 aaaagatttaataaggtctatggtggactacctataaagttggttcaccttagatatttaaggttaaaaactaacggaaatgaccaa 6140374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 218
Target Start/End: Complemental strand, 17319190 - 17319144
Alignment:
Q  172 tggttcactttagacatttgatgttaaaaactaacggagaagaccaa 218  Q
    |||||||| |||||||||| | ||||||||||||||| |||||||||    
T  17319190 tggttcaccttagacatttaaggttaaaaactaacggtgaagaccaa 17319144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 200
Target Start/End: Complemental strand, 29663847 - 29663762
Alignment:
Q  114 atcaaatggttaaaattaaaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaa 200  Q
    ||||| ||||||||||||||||| || | |||||  |||||||||||| || |||   |||||||| |||||||||| |||||||||    
T  29663847 atcaagtggttaaaattaaaaatctt-agtaaggtttatggtggaccacctataatgttggttcaccttagacatttaatgttaaaa 29663762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 211
Target Start/End: Complemental strand, 34438616 - 34438515
Alignment:
Q  108 aaataaatcaaatggttaaaattaaaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacg 207  Q
    ||||| ||||||||||| ||||||||||   |||||||||  |||||||||| |||| |||   | || |||  ||||||||||| |||||||||||||     
T  34438616 aaatagatcaaatggttgaaattaaaaaa--ttaataaggtctatggtggactatctataatgttagtccaccatagacatttgaggttaaaaactaaca 34438519  T
Q  208 gaga 211  Q
    ||||    
T  34438518 gaga 34438515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 218
Target Start/End: Complemental strand, 56000492 - 56000389
Alignment:
Q  114 atcaaatggttaaaattaaaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaag 213  Q
    |||||||||||||||||||||| | ||| |||||  || ||||||||| || |||   |||| ||| ||||||||||  ||||||||||| | ||| |||    
T  56000492 atcaaatggttaaaattaaaaa-acttagtaaggtctacggtggaccacctataatgttggtccaccttagacatttagtgttaaaaactgatggaaaag 56000394  T
Q  214 accaa 218  Q
    |||||    
T  56000393 accaa 56000389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 51218781 - 51219013
Alignment:
Q  18 gaagcagaagatgaatcgattttattaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatca 117  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  51218781 gaagaagaagatgaatcgattttattaggtgtgagtggttcacaggaaagtacaatagaccccacatgattcaacagtcctcttttaatgaaataaatca 51218880  T
Q  118 aatggttaaaattaaaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagacca 217  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  51218881 aatgattaaaattaaaaa-atttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaggacca 51218979  T
Q  218 ataaaggtaacagaagaagacataagggaccaat 251  Q
    ||  || |||| ||||||||||||||||||||||    
T  51218980 attgagttaacggaagaagacataagggaccaat 51219013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 42 - 218
Target Start/End: Original strand, 26055987 - 26056161
Alignment:
Q  42 ttaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatattta 141  Q
    |||||||| |||||||||||| ||| |||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||    
T  26055987 ttaggtgttagtggttcacaggaaagtacaatagaccctacataattcaacggtcctcttttaaagaa-taaatcaaatggttaaaattaaaaa-attta 26056084  T
Q  142 ataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaa 218  Q
    ||| ||| ||||||| |||| |||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||    
T  26056085 atacggcctatggtgaaccacctttaaatatggttcactttagacttttgatgttaaaatctaacggagaggaccaa 26056161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 40 - 250
Target Start/End: Original strand, 30551427 - 30551635
Alignment:
Q  40 tattaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatatt 139  Q
    |||||||||| ||||||||||| ||||||||||||||||| |||| || ||||  ||||||||||| |||| |||||||| ||||||||||||||| |||    
T  30551427 tattaggtgttagtggttcacactaaaatacaatagaccctacatgatccaacaatcctcttttaaagaaa-aaatcaaaaggttaaaattaaaaa-att 30551524  T
Q  140 taataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaataaaggtaacagaagaagaca 239  Q
    || |||||   |||||| |||| |||| ||||||||||||||||||||||||||| |||||||||||||||| |||||| | |||||||   |||| |||    
T  30551525 tactaaggtccatggtgcaccaccttttaatatggttcactttagacatttgatgctaaaaactaacggagatgaccaaaagaggtaacgatagaaaaca 30551624  T
Q  240 taagggaccaa 250  Q
    |||||||||||    
T  30551625 taagggaccaa 30551635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 40 - 218
Target Start/End: Original strand, 37624408 - 37624584
Alignment:
Q  40 tattaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatatt 139  Q
    |||||||||| ||||||||||| ||||||||||||||||| |||| |||||||  ||||||||||| |||| |||||||| ||||||||||||||| |||    
T  37624408 tattaggtgttagtggttcacactaaaatacaatagaccctacatgattcaacaatcctcttttaaagaaa-aaatcaaaaggttaaaattaaaaa-att 37624505  T
Q  140 taataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaa 218  Q
    || |||||   |||||| || | |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37624506 tactaaggtccatggtgcacaaccttttaatatggttcactttagacatttgatgttaaaaactaacggagaggaccaa 37624584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 40 - 228
Target Start/End: Complemental strand, 50678640 - 50678455
Alignment:
Q  40 tattaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatatt 139  Q
    |||||||||| ||| |||||||||||| |||||||||||| |  ||||||||| |||||||||||| |||| |||||||||||||||||||||||||  |    
T  50678640 tattaggtgttagtcgttcacagtaaagtacaatagaccctatgtaattcaacagtcctcttttaaagaaa-aaatcaaatggttaaaattaaaaat--t 50678544  T
Q  140 taataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaataaaggtaac 228  Q
    ||||| ||  ||||||| |||| ||||||||||||||||| |||||  ||||||||||||||||||| |||| |||||| | |||||||    
T  50678543 taatacggtctatggtgaaccacctttaaatatggttcaccttagagttttgatgttaaaaactaacagagaggaccaaaagaggtaac 50678455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 40 - 250
Target Start/End: Complemental strand, 27689565 - 27689353
Alignment:
Q  40 tattaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatat- 138  Q
    |||||||||| ||||||||||| ||||||||||||||||| |||| || ||||  |  |||||||| |||| |||||||| ||||||||||||||| |      
T  27689565 tattaggtgttagtggttcacactaaaatacaatagaccctacatgatccaacaattatcttttaaagaaa-aaatcaaaaggttaaaattaaaaaaaaa 27689467  T
Q  139 --ttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaataaaggtaacagaagaag 236  Q
      |||||||||   ||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| | |||||||   ||||     
T  27689466 aattaataaggtccatgatggaccacctttaaatatggttcactttagacatttggtgttaaaaactaacggagaggaccaaaagaggtaacgacagaaa 27689367  T
Q  237 acataagggaccaa 250  Q
    ||||||| ||||||    
T  27689366 acataagagaccaa 27689353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 56 - 211
Target Start/End: Complemental strand, 9634037 - 9633884
Alignment:
Q  56 ttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatatttaataaggcatatggt 155  Q
    |||||| |||||||||| |||||| ||||||| ||||  || |||| ||| |||| |||||||| ||| |||||| |||| |||||||||||  ||||||    
T  9634037 ttcacactaaaatacaaaagaccctacataatccaactatcttcttctaaagaaa-aaatcaaagggtcaaaatttaaaa-atttaataaggtctatggt 9633940  T
Q  156 ggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggaga 211  Q
    |||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  9633939 ggaccacctttaaacatggttcaccttagacatttgatgttaaaaactaacggaga 9633884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 40 - 218
Target Start/End: Original strand, 23081964 - 23082140
Alignment:
Q  40 tattaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatatt 139  Q
    |||||||||| ||||||| ||| ||||||||||||||||  |||| || ||||  ||| |||||||  ||| ||||||||  |||||||||||||| |||    
T  23081964 tattaggtgttagtggtttacactaaaatacaatagaccttacattatccaacaatccacttttaaaaaaa-aaatcaaaatgttaaaattaaaaa-att 23082061  T
Q  140 taataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaa 218  Q
    || |||||   ||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||| | ||||||    
T  23082062 tattaaggtccatggtggaccacctttaaatatggttcactttagatatttggtgttaaaaactaacggaaaggaccaa 23082140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 53 - 218
Target Start/End: Original strand, 22766670 - 22766834
Alignment:
Q  53 tggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatatttaataaggcatat 152  Q
    ||||| ||| ||||||||||||||||  |||| || ||||  ||| |||||||  ||| |||||||| ||||||||||||||| |||||  ||||   ||    
T  22766670 tggtttacactaaaatacaatagaccttacattatccaacaatccacttttaaaaaaaaaaatcaaaaggttaaaattaaaaa-atttatgaaggtccat 22766768  T
Q  153 ggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaa 218  Q
    ||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||| | ||||||    
T  22766769 ggtggaccacctttaaatatggttcactttagatatttggtgttaaaaactaacggaaaggaccaa 22766834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 137 - 249
Target Start/End: Complemental strand, 44977404 - 44977292
Alignment:
Q  137 atttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaataaaggtaacagaagaag 236  Q
    |||||||||||  || ||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||   ||||||| | |||||    
T  44977404 atttaataaggtttacggtggaccacctttaaatatggttcaccttagacatttgatgttaaaaactaacagagatgaccaaatgaggtaacggcagaag 44977305  T
Q  237 acataagggacca 249  Q
    |||||||||||||    
T  44977304 acataagggacca 44977292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 211
Target Start/End: Complemental strand, 14764522 - 14764338
Alignment:
Q  25 aagatgaatcgattttattaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggtt 124  Q
    ||||||||| ||||   |||||||| |||||||||||||||| | |||||||||| |||| ||| |||     | |||||| |||| |||||||||||||    
T  14764522 aagatgaatggattaacttaggtgttagtggttcacagtaaagtgcaatagaccctacatgatttaacaactattttttaaagaaa-aaatcaaatggtt 14764424  T
Q  125 aaaattaaaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggaga 211  Q
    ||||| ||||| ||||| || ||| |||||||||||| ||||||||| ||||||| ||| |||||| ||||||||||||||| ||||    
T  14764423 aaaataaaaaa-atttagtatggcgtatggtggaccacctttaaataaggttcaccttaaacatttaatgttaaaaactaacagaga 14764338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 40 - 217
Target Start/End: Original strand, 52742814 - 52742989
Alignment:
Q  40 tattaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatatt 139  Q
    |||||||||| ||||||| |||||||||||||||||| ||    | || ||||  | ||||||||| |||| |||||||| |||||||||| |||| ||     
T  52742814 tattaggtgtcagtggtttacagtaaaatacaatagatcctttgtgatccaacaattctcttttaaagaaa-aaatcaaaaggttaaaatttaaaa-atg 52742911  T
Q  140 taataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagacca 217  Q
    |||| |||  ||||||| |||| ||||||| ||||||||| ||| ||||||||||||||||||||||||||| |||||    
T  52742912 taattaggtctatggtgtaccacctttaaacatggttcaccttaaacatttgatgttaaaaactaacggagaggacca 52742989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 121 - 211
Target Start/End: Original strand, 49141414 - 49141503
Alignment:
Q  121 ggttaaaattaaaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggaga 211  Q
    |||||||||||||   ||||| |||||  ||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  49141414 ggttaaaattaaatgaattta-taaggtctatggtggaacaactttaaatatggttcaccttagacatttgatgttaaaaactaacggaga 49141503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 51217741 - 51217687
Alignment:
Q  197 aaaaactaacggagaagaccaataaaggtaacagaagaagacataagggaccaat 251  Q
    ||||||||||||||| |||||| | ||||||| ||||||||||||||||||||||    
T  51217741 aaaaactaacggagaggaccaagagaggtaacggaagaagacataagggaccaat 51217687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 208
Target Start/End: Original strand, 51726754 - 51726848
Alignment:
Q  114 atcaaatggttaaaattaaaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacgg 208  Q
    |||||| ||||||||   |||| |||||||||||  |||||||||||| || ||||  |||||||| |||||||||| | |||||||||||||||    
T  51726754 atcaaacggttaaaaaataaaagatttaataaggtctatggtggaccacctataaagttggttcaccttagacatttaaggttaaaaactaacgg 51726848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 218
Target Start/End: Complemental strand, 14169808 - 14169721
Alignment:
Q  131 aaaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaa 218  Q
    ||||| ||| |||||||  |||||||| ||| || ||||  |||||||| |||||||||| | ||||||||||||| || ||||||||    
T  14169808 aaaaagattcaataaggtctatggtgggccacctataaagttggttcaccttagacatttaaggttaaaaactaacagataagaccaa 14169721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 211
Target Start/End: Complemental strand, 21277182 - 21277103
Alignment:
Q  132 aaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggaga 211  Q
    |||| |||||||||||  |||||||||||| || ||||  |||||||| |||||||||| | || ||||||||| |||||    
T  21277182 aaaagatttaataaggtctatggtggaccacctataaagttggttcaccttagacatttaaggtcaaaaactaatggaga 21277103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 250
Target Start/End: Original strand, 25889487 - 25889538
Alignment:
Q  199 aaactaacggagaagaccaataaaggtaacagaagaagacataagggaccaa 250  Q
    ||||||||||||| |||||| | ||||||| |||||||||||||| ||||||    
T  25889487 aaactaacggagaggaccaaaagaggtaacggaagaagacataagtgaccaa 25889538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 34654331 - 34654386
Alignment:
Q  195 ttaaaaactaacggagaagaccaataaaggtaacagaagaagacataagggaccaa 250  Q
    ||||||| ||||||||| |||||||| ||||||| | |||||||||||| ||||||    
T  34654331 ttaaaaattaacggagaggaccaatagaggtaacggtagaagacataagagaccaa 34654386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 250
Target Start/End: Original strand, 48935105 - 48935156
Alignment:
Q  199 aaactaacggagaagaccaataaaggtaacagaagaagacataagggaccaa 250  Q
    ||||||||||||| |||||| | ||||||| | |||||||||||||||||||    
T  48935105 aaactaacggagatgaccaaaagaggtaacggcagaagacataagggaccaa 48935156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 218
Target Start/End: Complemental strand, 8092781 - 8092700
Alignment:
Q  137 atttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaa 218  Q
    |||||||||||  |||||||||||| || ||||  |||||||| ||||| |||| | |||||| ||||||||| | ||||||    
T  8092781 atttaataaggtctatggtggaccacctataaagttggttcaccttagatatttaaggttaaatactaacggaaaggaccaa 8092700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 211
Target Start/End: Original strand, 19466111 - 19466212
Alignment:
Q  108 aaataaatcaaatggttaaaattaaaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacg 207  Q
    ||||| ||||||||| | ||||||||||   |||||||||  |||||||||| |||| |||   | || |||  ||||||||||| ||||||||||||||    
T  19466111 aaatagatcaaatggctgaaattaaaaaa--ttaataaggtctatggtggactatctataatgttagtccaccatagacatttgaggttaaaaactaacg 19466208  T
Q  208 gaga 211  Q
    ||||    
T  19466209 gaga 19466212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 35683181 - 35683125
Alignment:
Q  194 gttaaaaactaacggagaagaccaataaaggtaacagaagaagacataagggaccaa 250  Q
    |||||||  ||||||||| |||||| | ||||||| | |||||||||||||||||||    
T  35683181 gttaaaatgtaacggagaggaccaaaagaggtaacggcagaagacataagggaccaa 35683125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 161; Significance: 6e-86; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 23 - 251
Target Start/End: Original strand, 44103115 - 44103343
Alignment:
Q  23 agaagatgaatcgattttattaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatgg 122  Q
    ||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||    
T  44103115 agaagatgaatggattttattaggtgtgagtggttcacaataaagtacaatagaccccacatgattcaacggtcttcttttaatgaaaaaaatcaaatgg 44103214  T
Q  123 ttaaaattaaaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaataaa 222  Q
    ||||||||||||| | ||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||| | |    
T  44103215 ttaaaattaaaaaaaattaataaggcatatggtggaccacctttaaacatggttcaccttagacatttgatgttaaaaactaacggagaggaccaaaaga 44103314  T
Q  223 ggtaacagaagaagacataagggaccaat 251  Q
    || ||| |||||||||||||| |||||||    
T  44103315 ggaaacggaagaagacataagagaccaat 44103343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 13513720 - 13513489
Alignment:
Q  18 gaagcagaagatgaatcgattttattaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatca 117  Q
    |||| |||||||||||| |||||||| |||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| |||||| |||| ||||||    
T  13513720 gaagaagaagatgaatcaattttatttggtgtgagtggttcacagtaaagtacaatagacctcacatgattcaacggtcctattttaaagaaa-aaatca 13513622  T
Q  118 aatggttaaaattaaaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagacca 217  Q
    |||||||||||||||||| ||| ||||||| |||||||||||||  |||||||||||||||  ||| |||||||||||||||| |||||||||| |||||    
T  13513621 aatggttaaaattaaaaaaatt-aataaggtatatggtggaccacttttaaatatggttcatcttatacatttgatgttaaaagctaacggagaggacca 13513523  T
Q  218 ataaaggtaacagaagaagacataagggaccaat 251  Q
    | | ||||||||||||||||||||||||||||||    
T  13513522 aaagaggtaacagaagaagacataagggaccaat 13513489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 13603253 - 13603022
Alignment:
Q  18 gaagcagaagatgaatcgattttattaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatca 117  Q
    |||| |||||||||||| |||||||| |||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| |||||| |||| ||||||    
T  13603253 gaagaagaagatgaatcaattttatttggtgtgagtggttcacagtaaagtacaatagacctcacatgattcaacggtcctattttaaagaaa-aaatca 13603155  T
Q  118 aatggttaaaattaaaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagacca 217  Q
    |||||||||||||||||| ||| ||||||| |||||||||||||  |||||||||||||||  ||| |||||||||||||||| |||||||||| |||||    
T  13603154 aatggttaaaattaaaaaaatt-aataaggtatatggtggaccacttttaaatatggttcatcttatacatttgatgttaaaagctaacggagaggacca 13603056  T
Q  218 ataaaggtaacagaagaagacataagggaccaat 251  Q
    | | ||||||||||||||||||||||||||||||    
T  13603055 aaagaggtaacagaagaagacataagggaccaat 13603022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 25 - 251
Target Start/End: Complemental strand, 21670357 - 21670133
Alignment:
Q  25 aagatgaatcgattttattaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggtt 124  Q
    ||||||||| ||||||||||||||||| || |||||| |||| || |||||||||||||| |||||||||||||||||||| |||| ||| |||||||||    
T  21670357 aagatgaattgattttattaggtgtgaatgattcacactaaagtataatagaccccacatgattcaacggtcctcttttaaagaaa-aaaccaaatggtt 21670259  T
Q  125 aaaattaaaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaataaagg 224  Q
    ||||||||||| ||| |||||||||||||||||||||  ||| |||||||||||| ||||| |||||||||||||||||||||||||||||||| | |||    
T  21670258 aaaattaaaaaaatt-aataaggcatatggtggaccactttttaatatggttcaccttagatatttgatgttaaaaactaacggagaagaccaaaagagg 21670160  T
Q  225 taacagaagaagacataagggaccaat 251  Q
    |||| ||||||||||||||||||||||    
T  21670159 taacggaagaagacataagggaccaat 21670133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 23 - 251
Target Start/End: Complemental strand, 21962118 - 21961892
Alignment:
Q  23 agaagatgaatcgattttattaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatgg 122  Q
    ||||||||||| |||||||| || ||| |||||||||||||||| |||||||||| | || | |||||| |||| | |||||| |||| |||||||||||    
T  21962118 agaagatgaatggattttatcagatgttagtggttcacagtaaagtacaatagactcaacttgattcaatggtcttgttttaaagaaa-aaatcaaatgg 21962020  T
Q  123 ttaaaattaaaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaataaa 222  Q
    ||||||||||||| ||||| ||||||||||||||||||| ||||||| ||||||||| | ||||||||||||||||||||||||||||| |||||| | |    
T  21962019 ttaaaattaaaaa-atttagtaaggcatatggtggaccacctttaaacatggttcacctaagacatttgatgttaaaaactaacggagaggaccaaaaga 21961921  T
Q  223 ggtaacagaagaagacataagggaccaat 251  Q
    | |||| ||||||||||||||||| ||||    
T  21961920 gataacggaagaagacataagggatcaat 21961892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 39325649 - 39325881
Alignment:
Q  18 gaagcagaagatgaatcgattttattaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatca 117  Q
    |||| ||||||||||| ||||||||||||||| | |||||||||||||| ||||||||  |  |||| || |||| |   |||||||| |||| ||||||    
T  39325649 gaagaagaagatgaatagattttattaggtgttaatggttcacagtaaagtacaataggtcgtacatgatccaactgcattcttttaaagaaaaaaatca 39325748  T
Q  118 aatggttaaaattaaaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagacca 217  Q
    |||||||||||||||||| ||||| ||||||||||| | ||||| ||||||| || |||||| |||||||||||||||||||||||| | |||| ||| |    
T  39325749 aatggttaaaattaaaaa-atttagtaaggcatatgatagaccacctttaaacatagttcaccttagacatttgatgttaaaaactagcagagatgacta 39325847  T
Q  218 ataaaggtaacagaagaagacataagggaccaat 251  Q
    | | ||||||| |||||| |||||||||||||||    
T  39325848 aaagaggtaacggaagaaaacataagggaccaat 39325881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 41 - 251
Target Start/End: Complemental strand, 10052381 - 10052173
Alignment:
Q  41 attaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatattt 140  Q
    ||||||||  ||||||||||||||||||||||||||||| |||| || ||||  || |||||||| |||| |||||||| |||||||| | |||| ||||    
T  10052381 attaggtggtagtggttcacagtaaaatacaatagaccctacatgatccaacaatcatcttttaaagaaa-aaatcaaagggttaaaacttaaaa-attt 10052284  T
Q  141 aataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaataaaggtaacagaagaagacat 240  Q
    |||||||  |||||||||||| ||||||||||||||||  |||||||||| |||||||||||||| ||||| |||||| | ||||||| | ||| |||||    
T  10052283 aataaggtttatggtggaccacctttaaatatggttcatcttagacatttaatgttaaaaactaaaggagatgaccaaaagaggtaacggcagatgacat 10052184  T
Q  241 aagggaccaat 251  Q
    |||||||||||    
T  10052183 aagggaccaat 10052173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 40 - 250
Target Start/End: Original strand, 13363416 - 13363624
Alignment:
Q  40 tattaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatatt 139  Q
    |||||||||| |||||||||||  |||||||||||||||| |||| || ||||  ||||||||||| |||| |||| ||| ||||||||||||||| |||    
T  13363416 tattaggtgttagtggttcacacaaaaatacaatagaccctacatgatccaacaatcctcttttaaagaaa-aaattaaaaggttaaaattaaaaa-att 13363513  T
Q  140 taataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaataaaggtaacagaagaagaca 239  Q
    || |||||   |||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| | |||||||   |||| |||    
T  13363514 tactaaggtccatggtgcaccacctttaaatatggttcactttagacatttggtgttaaaaactaacggagaggaccaaaagaggtaaccacagaaaaca 13363613  T
Q  240 taagggaccaa 250  Q
    |||||||||||    
T  13363614 taagggaccaa 13363624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 40 - 218
Target Start/End: Complemental strand, 36756343 - 36756166
Alignment:
Q  40 tattaggtgtgagtggttcacagtaaaatacaat-agaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatat 138  Q
    |||||||||| ||||||||||||||||||||||| |||||| |||| || ||||| | ||||||||| |||| |||| ||| |||||||||| |||| ||    
T  36756343 tattaggtgttagtggttcacagtaaaatacaattagaccctacatgatccaacgattctcttttaaagaaa-aaattaaagggttaaaatttaaaa-at 36756246  T
Q  139 ttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaa 218  Q
    |||||||||| ||||||| |||| ||||||||||| ||||| ||||| ||||||||||||||||||||||||| ||||||    
T  36756245 ttaataaggcttatggtgaaccacctttaaatatgattcaccttagaaatttgatgttaaaaactaacggagatgaccaa 36756166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 81 - 220
Target Start/End: Original strand, 37276122 - 37276259
Alignment:
Q  81 acataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatatttaataaggcatatggtggaccatctttaaatatggttcact 180  Q
    ||||||||||| ||||||||||||| |||| |||||||||||||||||||||||| |||||||| ||  ||| ||| |||| |||||||||||||||||     
T  37276122 acataattcaaaggtcctcttttaaagaaa-aaatcaaatggttaaaattaaaaa-atttaatatggtctatagtgaaccacctttaaatatggttcacc 37276219  T
Q  181 ttagacatttgatgttaaaaactaacggagaagaccaata 220  Q
    |||||| ||||||||||||||||||| |||| ||||||||    
T  37276220 ttagacttttgatgttaaaaactaacagagaggaccaata 37276259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 40 - 218
Target Start/End: Complemental strand, 7486355 - 7486179
Alignment:
Q  40 tattaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatatt 139  Q
    ||||||||||  |||||| ||| |||||||||||||| |  | || ||  |||  ||||||||||| |||| |||||||| || ||||||| |||| |||    
T  7486355 tattaggtgttggtggtttacaataaaatacaatagatcttatatgatctaacaatcctcttttaaagaaa-aaatcaaaaggctaaaatttaaaa-att 7486258  T
Q  140 taataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaa 218  Q
    ||||||||  |||||||||| |  |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7486257 taataaggtctatggtggacaacatttaaacatggttcactttagacatttgatgttaaaaactaacggagaggaccaa 7486179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 41 - 218
Target Start/End: Original strand, 39546516 - 39546691
Alignment:
Q  41 attaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatattt 140  Q
    |||||||||  ||||||||| ||||||||||||||| ||||||| || ||||  |||||||||||  ||| |||||||| ||||||||||||   | |||    
T  39546516 attaggtgtttgtggttcacggtaaaatacaatagatcccacatgatccaacaatcctcttttaaaaaaa-aaatcaaagggttaaaattaatttt-ttt 39546613  T
Q  141 aataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaa 218  Q
    | |||||   ||||||||||| ||||||| ||||||||  ||| ||||||||||||||||||||||||||| ||||||    
T  39546614 actaaggtccatggtggaccacctttaaacatggttcatcttaaacatttgatgttaaaaactaacggagatgaccaa 39546691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 52 - 218
Target Start/End: Complemental strand, 117313 - 117150
Alignment:
Q  52 gtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatatttaataaggcata 151  Q
    |||||| ||| |||||||||||||| || | || || ||||  |||||||| || |||| |||||||| || ||||||| |||||  ||| |||||  ||    
T  117313 gtggtttacaataaaatacaatagatcctatatgatccaacaatcctctttcaaagaaa-aaatcaaaaggctaaaatttaaaat--ttagtaaggtcta 117217  T
Q  152 tggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaa 218  Q
    |||||||||| ||||||| |||  |||| ||||||||||||||||||||||||||||||| ||||||    
T  117216 tggtggaccacctttaaacatgactcaccttagacatttgatgttaaaaactaacggagaggaccaa 117150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 95 - 218
Target Start/End: Complemental strand, 21267356 - 21267234
Alignment:
Q  95 tcctcttttaatgaaataaatcaaatggttaaaattaaaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatg 194  Q
    |||| |||||| |||| |||||||| |||||||||| |||| ||||||| ||| ||||||||||||| ||| ||  ||||| ||| ||||| ||||||||    
T  21267356 tcctattttaaagaaaaaaatcaaaaggttaaaatttaaaa-atttaattaggtatatggtggaccaccttgaatcatggtccaccttagatatttgatg 21267258  T
Q  195 ttaaaaactaacggagaagaccaa 218  Q
    ||||||||||||||||| ||||||    
T  21267257 ttaaaaactaacggagaggaccaa 21267234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 36938851 - 36938783
Alignment:
Q  150 tatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaa 218  Q
    ||||||| |||| ||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||    
T  36938851 tatggtgaaccacctttaaatatggttcactttagatatttgatgttaaaaattaacagagaagaccaa 36938783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 51 - 210
Target Start/End: Complemental strand, 45541746 - 45541594
Alignment:
Q  51 agtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatatttaataaggcat 150  Q
    ||||||| |||||||| |||||||||||| ||||||||||| |||| |   ||||  ||| ||||||||| |||||||||||||| ||||||||          
T  45541746 agtggtttacagtaaagtacaatagaccctacataattcaatggtcat---ttaa--aaaaaaatcaaattgttaaaattaaaaa-atttaatacattcc 45541653  T
Q  151 atggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggag 210  Q
    |||||| |||| ||||||||||| |||||||||||| |||||||||||||| ||| ||||    
T  45541652 atggtgaacca-ctttaaatatgattcactttagacttttgatgttaaaaattaatggag 45541594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 13514858 - 13514912
Alignment:
Q  197 aaaaactaacggagaagaccaataaaggtaacagaagaagacataagggaccaat 251  Q
    ||||||||||||||| |||||| | ||||||||||||||||||||||||||||||    
T  13514858 aaaaactaacggagatgaccaaaagaggtaacagaagaagacataagggaccaat 13514912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 13604391 - 13604445
Alignment:
Q  197 aaaaactaacggagaagaccaataaaggtaacagaagaagacataagggaccaat 251  Q
    ||||||||||||||| |||||| | ||||||||||||||||||||||||||||||    
T  13604391 aaaaactaacggagatgaccaaaagaggtaacagaagaagacataagggaccaat 13604445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 218
Target Start/End: Original strand, 13366984 - 13367064
Alignment:
Q  138 tttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaa 218  Q
    ||||||||||  |||||||||||| || ||||  |||||||| |||||||||| | |||||||||||||||||| ||||||    
T  13366984 tttaataaggtctatggtggaccacctataaagttggttcaccttagacatttaaggttaaaaactaacggagaggaccaa 13367064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 140 - 211
Target Start/End: Original strand, 12281716 - 12281787
Alignment:
Q  140 taataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggaga 211  Q
    |||||||| ||||||||||||| ||| ||  ||||| ||| ||||| |||||||||||||||||||||||||    
T  12281716 taataaggtatatggtggaccaccttgaatcatggtccacattagatatttgatgttaaaaactaacggaga 12281787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 206
Target Start/End: Original strand, 2421191 - 2421295
Alignment:
Q  101 tttaatgaaataaatcaaatggttaaaattaaaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaa 200  Q
    ||||| |||| | |||||| |||||||| |||||  |||||||||||  |||| |||||||||| ||||  |||||||| |||||||||| | |||||||    
T  2421191 tttaaagaaaaagatcaaacggttaaaaataaaag-atttaataaggtctatgatggaccatctataaagttggttcaccttagacatttaaggttaaaa 2421289  T
Q  201 actaac 206  Q
    ||||||    
T  2421290 actaac 2421295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 218
Target Start/End: Complemental strand, 19913675 - 19913594
Alignment:
Q  137 atttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaa 218  Q
    ||||||||| |  ||||||||||||||| ||||  |||||||| ||||| |||| | |||||||||||||||||| ||||||    
T  19913675 atttaataaagtctatggtggaccatctataaagttggttcaccttagaaatttaaggttaaaaactaacggagaggaccaa 19913594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 218
Target Start/End: Complemental strand, 35944096 - 35944010
Alignment:
Q  132 aaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaa 218  Q
    |||| ||||||||||   ||||||||| || || ||||  |||||||| |||||||||| | |||||||||||||||||| ||||||    
T  35944096 aaaagatttaataagatctatggtggatcacctataaagttggttcaccttagacatttaaagttaaaaactaacggagatgaccaa 35944010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 218
Target Start/End: Complemental strand, 36070366 - 36070280
Alignment:
Q  132 aaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaa 218  Q
    ||||||||||||||||  |||||||||||| || ||||  |||||||| |||||||||| | || ||| |||||||| || ||||||    
T  36070366 aaaatatttaataaggtctatggtggaccacctataaagttggttcaccttagacatttaaggtcaaagactaacggggaggaccaa 36070280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 211
Target Start/End: Complemental strand, 44606344 - 44606248
Alignment:
Q  114 atcaaatggttaaaattaaaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggaga 211  Q
    |||||| |||||||| |||||  |||||| ||||  |||||||||||| || ||||  |||||||| |||||||||| | |||||||||||| |||||    
T  44606344 atcaaacggttaaaaataaaag-atttaacaaggtctatggtggaccacctataaagttggttcaccttagacatttaaggttaaaaactaatggaga 44606248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 218
Target Start/End: Complemental strand, 8095553 - 8095448
Alignment:
Q  112 aaatcaaatggttaaaattaaaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggaga 211  Q
    ||||||||||||||||  || ||  ||||||||||| |||||||| | || || ||||  |||||||| |||||||||| |  ||||||||||||||| |    
T  8095553 aaatcaaatggttaaagatacaag-atttaataaggtatatggtgcatcacctataaagttggttcaccttagacatttaagattaaaaactaacggaaa 8095455  T
Q  212 agaccaa 218  Q
     ||||||    
T  8095454 ggaccaa 8095448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 243
Target Start/End: Complemental strand, 39323910 - 39323864
Alignment:
Q  197 aaaaactaacggagaagaccaataaaggtaacagaagaagacataag 243  Q
    ||||||||||||||| |||||| | ||||||| ||||||||||||||    
T  39323910 aaaaactaacggagaggaccaaaagaggtaacggaagaagacataag 39323864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 44102072 - 44102018
Alignment:
Q  197 aaaaactaacggagaagaccaataaaggtaacagaagaagacataagggaccaat 251  Q
    |||||||||| |||| |||||| | ||||||| |||||||||||||| |||||||    
T  44102072 aaaaactaacagagaggaccaaaagaggtaacggaagaagacataagagaccaat 44102018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 218
Target Start/End: Complemental strand, 8395200 - 8395097
Alignment:
Q  114 atcaaatggttaaaattaaaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaag 213  Q
    |||||| |||||||||||||  | |||||||| |  |||||||||||| ||  |||  ||||||| ||||  ||||| | |||||||||||||||||| |    
T  8395200 atcaaacggttaaaattaaattt-tttaataaagtgtatggtggaccacctacaaagttggttcattttaaccatttaaggttaaaaactaacggagagg 8395102  T
Q  214 accaa 218  Q
    |||||    
T  8395101 accaa 8395097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 202
Target Start/End: Original strand, 24069357 - 24069444
Alignment:
Q  114 atcaaatggttaaaattaaaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaac 202  Q
    |||||||||||||||||||||| | ||| |||||  |||||||||||| || |||   |||| ||| ||||||||||  ||||||||||    
T  24069357 atcaaatggttaaaattaaaaa-acttagtaaggtctatggtggaccacctataatgttggtccaccttagacatttagtgttaaaaac 24069444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 24494865 - 24495098
Alignment:
Q  18 gaagcagaagatgaatcgattttattaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatg-aaataaatc 116  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||  |||||||| | ||| |||||    
T  24494865 gaagaagaagatgaatcaattttattaggtgtgagtggttcacagtaaagtacaatagacgccacatgattcaacggttatcttttaaaggaaaaaaatc 24494964  T
Q  117 aaatggttaaaattaaaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagacc 216  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24494965 aaatggttaaaattaaaaaaatt-aataaggcatatggtggaccacttttaaatatggttcactttagacatttgatgttaaaaactaacggagaggacc 24495063  T
Q  217 aataaaggtaacagaagaagacataagggaccaat 251  Q
    ||   ||||||||||||||||||||||||||||||    
T  24495064 aaacgaggtaacagaagaagacataagggaccaat 24495098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 63 - 211
Target Start/End: Original strand, 14108932 - 14109078
Alignment:
Q  63 taaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatatttaataaggcatatggtggaccat 162  Q
    ||||||| |||||| || |||| || ||||  ||||||||||| |||| |||| ||| |||||||||| ||||| ||||||||||  ||||||||||||     
T  14108932 taaaatataatagatcctacatgatccaacaatcctcttttaaagaaa-aaattaaaaggttaaaatttaaaat-tttaataaggtctatggtggaccac 14109029  T
Q  163 ctttaaatatggttcactttagacatttgatgttaaaaactaacggaga 211  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  14109030 ctttaaacatggttcaccttagacatttgatgttaaaaactaacggaga 14109078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 63 - 211
Target Start/End: Original strand, 14418889 - 14419035
Alignment:
Q  63 taaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatatttaataaggcatatggtggaccat 162  Q
    ||||||| |||||| || |||| || ||||  ||||||||||| |||| |||| ||| |||||||||| ||||| ||||||||||  ||||||||||||     
T  14418889 taaaatataatagatcctacatgatccaacaatcctcttttaaagaaa-aaattaaaaggttaaaatttaaaat-tttaataaggtctatggtggaccac 14418986  T
Q  163 ctttaaatatggttcactttagacatttgatgttaaaaactaacggaga 211  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  14418987 ctttaaacatggttcaccttagacatttgatgttaaaaactaacggaga 14419035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 201
Target Start/End: Complemental strand, 4167729 - 4167570
Alignment:
Q  40 tattaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatatt 139  Q
    ||||||||||  |||||| ||| |||||||||| |||||| |||| || ||||   |||||||||| |||| |||||||| |||| ||||| |||| |||    
T  4167729 tattaggtgtcggtggtttacaataaaatacaacagaccctacatcatccaacaaacctcttttaaagaaa-aaatcaaaaggttgaaatttaaaa-att 4167632  T
Q  140 taataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaa 201  Q
    |||||||   |||||||||||| ||||||| ||||||||| ||||| |||||||||||||||    
T  4167631 taataagatctatggtggaccacctttaaacatggttcaccttagaaatttgatgttaaaaa 4167570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 35315053 - 35315199
Alignment:
Q  18 gaagcagaagatgaatcgattttattaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatca 117  Q
    |||| ||||||||||| ||||   |||||||| ||| |||||||||||| ||||| |||||| |||| |||||||  |  |||||||| |||| |||| |    
T  35315053 gaagaagaagatgaatggattaacttaggtgttagtagttcacagtaaagtacaaaagaccctacatgattcaacaattatcttttaaagaaa-aaataa 35315151  T
Q  118 aatggttaaaattaaaaatatttaataaggcatatggtggaccatcttt 166  Q
    ||||||||||| |||||| ||||| ||||||||||||||||||| ||||    
T  35315152 aatggttaaaa-taaaaaaatttagtaaggcatatggtggaccaccttt 35315199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 40 - 218
Target Start/End: Complemental strand, 38406295 - 38406120
Alignment:
Q  40 tattaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatatt 139  Q
    |||| ||||||  ||||| ||| |||||||||||||||   | || || ||||  |||||||||||  ||| |||| ||| |||| ||||| |||| |||    
T  38406295 tatttggtgtggatggtttacaataaaatacaatagactttaaatgatccaacaatcctcttttaaacaaa-aaattaaaaggttgaaatttaaaa-att 38406198  T
Q  140 taataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaa 218  Q
    ||||||||  |||| ||||| | ||||||||||||||||| ||||||||||||||||||||| ||||||| | ||||||    
T  38406197 taataaggtctatg-tggactacctttaaatatggttcaccttagacatttgatgttaaaaattaacggaaaggaccaa 38406120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 206
Target Start/End: Original strand, 19848690 - 19848836
Alignment:
Q  58 cacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatatttaataaggcatatggtgg 157  Q
    |||||||||||||||||||| | |||| || ||||  |||||||||||  ||| |||||||| ||||| |||||||  | |||| |||||   |||||||    
T  19848690 cacagtaaaatacaatagactctacatgatccaacaatcctcttttaaacaaa-aaatcaaagggttacaattaaattt-tttactaaggtccatggtgg 19848787  T
Q  158 accatctttaaatatggttcactttagacatttgatgttaaaaactaac 206  Q
    | || ||| ||||||||||||| ||||| ||||| ||||||||| ||||    
T  19848788 atcaccttgaaatatggttcaccttagagatttgctgttaaaaattaac 19848836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 211
Target Start/End: Complemental strand, 4857347 - 4857310
Alignment:
Q  174 gttcactttagacatttgatgttaaaaactaacggaga 211  Q
    |||||| |||||||||||||||||||||||||||||||    
T  4857347 gttcaccttagacatttgatgttaaaaactaacggaga 4857310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 46458646 - 46458727
Alignment:
Q  137 atttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaa 218  Q
    |||||||||||  |||||||||| | || ||||  |||||||| |||||||||| | ||||||||| |||||||| ||||||    
T  46458646 atttaataaggtctatggtggactacctataaagttggttcaccttagacatttaaggttaaaaacaaacggagaggaccaa 46458727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 206
Target Start/End: Complemental strand, 18801475 - 18801329
Alignment:
Q  58 cacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatatttaataaggcatatggtgg 157  Q
    |||| ||||||||||||||| | |||| || ||||  |||||||||||  ||| |||| ||| ||||| |||||||  | |||| |||||   |||||||    
T  18801475 cacaataaaatacaatagactctacatgatccaacaatcctcttttaaacaaa-aaattaaagggttacaattaaattt-tttactaaggtccatggtgg 18801378  T
Q  158 accatctttaaatatggttcactttagacatttgatgttaaaaactaac 206  Q
    | || ||| ||||||||||||| ||||| ||||| ||||||||| ||||    
T  18801377 atcaccttgaaatatggttcaccttagagatttgctgttaaaaattaac 18801329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 218
Target Start/End: Original strand, 25154847 - 25154950
Alignment:
Q  114 atcaaatggttaaaattaaaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaag 213  Q
    |||||| |||||||| |||||  ||||||||||   ||||||||||||  | ||||  |||||||| |||||||||| | ||||||||| |||||||| |    
T  25154847 atcaaacggttaaaaataaaag-atttaataagttttatggtggaccacttataaagttggttcaccttagacatttaaggttaaaaacaaacggagatg 25154945  T
Q  214 accaa 218  Q
    |||||    
T  25154946 accaa 25154950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 251
Target Start/End: Complemental strand, 44113633 - 44113498
Alignment:
Q  114 atcaaatggttaaaattaaaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaag 213  Q
    |||||| |||||||||||||||| |  |||||||   ||||||||||| || | |   |||||||| ||||| ||||   |||||||||||||| ||  |    
T  44113633 atcaaagggttaaaattaaaaatct--aataaggtgcatggtggaccacctatgatgctggttcaccttagatatttatggttaaaaactaacgaagtgg 44113536  T
Q  214 accaataaaggtaacagaagaagacataagggaccaat 251  Q
    ||||| | ||||||| | |||| |||||||||||||||    
T  44113535 accaaaataggtaacggcagaatacataagggaccaat 44113498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 250
Target Start/End: Original strand, 13286971 - 13287040
Alignment:
Q  181 ttagacatttgatgttaaaaactaacggagaagaccaataaaggtaacagaagaagacataagggaccaa 250  Q
    |||||||||| | |||||||||||||| ||| |||||| | ||  ||||| | |||||||||||||||||    
T  13286971 ttagacatttaaggttaaaaactaacgaagaggaccaaaatagtaaacagcataagacataagggaccaa 13287040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 26406295 - 26406227
Alignment:
Q  150 tatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaa 218  Q
    |||||||||||| ||  |||  |||||||| |||||||||| | |||||||| ||||||||| ||||||    
T  26406295 tatggtggaccacctacaaagttggttcaccttagacatttaaggttaaaaaataacggagatgaccaa 26406227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 205
Target Start/End: Complemental strand, 40930601 - 40930533
Alignment:
Q  137 atttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaa 205  Q
    ||||||||||| |||||| ||| || ||| ||  ||||| ||| ||||| |||||||||||||||||||    
T  40930601 atttaataaggtatatgggggatcaccttgaatcatggtccaccttagatatttgatgttaaaaactaa 40930533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 44114649 - 44114701
Alignment:
Q  197 aaaaactaacggagaagaccaataaaggtaacagaagaagacataagggacca 249  Q
    ||||||||||||||| |||||| | |||| |||| |||||| |||||||||||    
T  44114649 aaaaactaacggagaggaccaaaagaggtgacagtagaagatataagggacca 44114701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 149; Significance: 8e-79; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 17349918 - 17350148
Alignment:
Q  18 gaagcagaagatgaatcgattttattaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatca 117  Q
    |||| |||||||||||  |||||||||||||| ||||||||||| |||| | |||||||||| |||| |||||||||||||||||||| |||| ||||||    
T  17349918 gaagaagaagatgaatgtattttattaggtgttagtggttcacaataaagttcaatagaccctacatgattcaacggtcctcttttaaagaaa-aaatca 17350016  T
Q  118 aatggttaaaattaaaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagacca 217  Q
    |||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  17350017 aatggttaaaattaaaaa-atttagtaaggcatatggtggaccacctttaaatatggttcaccttagacatttgatgttaaaaactaacggagaggacca 17350115  T
Q  218 ataaaggtaacagaagaagacataagggaccaa 250  Q
    | | ||||||||| |||||||||||||||||||    
T  17350116 aaagaggtaacaggagaagacataagggaccaa 17350148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 39133317 - 39133087
Alignment:
Q  18 gaagcagaagatgaatcgattttattaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatca 117  Q
    |||| ||||||||| |  |||||||||||||| ||||||||||| |||| |||||||||||  |||| ||||||| |||||||||||| |||| ||||||    
T  39133317 gaagaagaagatgactgtattttattaggtgttagtggttcacaataaagtacaatagaccttacatgattcaactgtcctcttttaaagaaa-aaatca 39133219  T
Q  118 aatggttaaaattaaaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagacca 217  Q
    |||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||| |||||    
T  39133218 aatggttaaaattaaaaa-atttagtaaggcatatggtggaccacctttaaatatggttcaccttagacatttgatgttaaaaactaacagagaggacca 39133120  T
Q  218 ataaaggtaacagaagaagacataagggaccaa 250  Q
    | | |||||||   |||||||||||||||||||    
T  39133119 aaagaggtaacgagagaagacataagggaccaa 39133087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 56 - 251
Target Start/End: Original strand, 7483379 - 7483572
Alignment:
Q  56 ttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatatttaataaggcatatggt 155  Q
    ||||||||||| || |||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||| ||| |||||||||||||||    
T  7483379 ttcacagtaaagtataatagaccccacatgattcaacggtcctcttttaaagaaa-aaatcaaatggttaaaattaaaaaaatt-aataaggcatatggt 7483476  T
Q  156 ggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaataaaggtaacagaagaagacataagggaccaat 251  Q
    || |||  ||| |||||||||||| ||||| ||||||||||||||||||||||||| |||||| | ||||||| ||||||||||||||||||||||    
T  7483477 gggccactttttaatatggttcaccttagatatttgatgttaaaaactaacggagatgaccaaaagaggtaacggaagaagacataagggaccaat 7483572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 42 - 218
Target Start/End: Complemental strand, 11219706 - 11219532
Alignment:
Q  42 ttaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatattta 141  Q
    |||||||| |||||||||||| ||| |||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||    
T  11219706 ttaggtgttagtggttcacaggaaagtacaatagaccctacataattcaacggtcctcttttaaagaaa-aaatcaaatggttaaaattaaaaa-attta 11219609  T
Q  142 ataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaa 218  Q
    ||| |   ||||||| |||| ||||||||||||||||| |||||  ||||||||||||| |||||||||| ||||||    
T  11219608 atacgatctatggtgaaccacctttaaatatggttcaccttagaattttgatgttaaaatctaacggagatgaccaa 11219532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 40 - 218
Target Start/End: Original strand, 34902832 - 34903008
Alignment:
Q  40 tattaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatatt 139  Q
    |||||||||| ||||||||||| ||||| |||||| |||| |||| || ||||  |||||||||||||||| |||||||| ||||||||||||||| |||    
T  34902832 tattaggtgttagtggttcacactaaaaaacaataaaccctacatgatccaacaatcctcttttaatgaaa-aaatcaaaaggttaaaattaaaaa-att 34902929  T
Q  140 taataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaa 218  Q
    || |||||   |||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  34902930 tactaaggtccatggtgcaccacctttaaatatggttcactttagacatttggtgttaaaaactaacggagatgaccaa 34903008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 40 - 218
Target Start/End: Complemental strand, 53808596 - 53808420
Alignment:
Q  40 tattaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatatt 139  Q
    |||||||||| |||||||||||||||||||||||||| || |||| || ||||| | ||||||||| |||| |||||||| |||||||||| |||| |||    
T  53808596 tattaggtgttagtggttcacagtaaaatacaatagatcctacatgatccaacgattctcttttaaagaaa-aaatcaaagggttaaaatttaaaa-att 53808499  T
Q  140 taataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaa 218  Q
    ||||||||  |||||||||||| ||||| ||||| ||||| ||||| ||||||||||||||||||| ||||| ||||||    
T  53808498 taataaggtttatggtggaccacctttagatatgattcaccttagaaatttgatgttaaaaactaatggagatgaccaa 53808420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 40 - 218
Target Start/End: Complemental strand, 47765717 - 47765540
Alignment:
Q  40 tattaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatatt 139  Q
    ||||| |||| ||||||||||  ||||||||||||||||| |||| || ||||  ||||||||||| |||| |||||||| |||||||||| |||| |||    
T  47765717 tattaagtgttagtggttcacgctaaaatacaatagaccctacatgatccaacaatcctcttttaaagaaaaaaatcaaaaggttaaaatttaaaa-att 47765619  T
Q  140 taataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaa 218  Q
     |||||||  |||||||||||||||||||  ||||||||| | ||| ||||||||||||||||||||||||| ||||||    
T  47765618 caataaggtctatggtggaccatctttaacaatggttcacctaagatatttgatgttaaaaactaacggagatgaccaa 47765540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 40 - 227
Target Start/End: Complemental strand, 32979366 - 32979181
Alignment:
Q  40 tattaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatatt 139  Q
    |||||||||| |||| || ||| |||| ||||||| |||| |||||||||||| ||| |||||||| ||| | ||||||||||||||||||||||| |||    
T  32979366 tattaggtgttagtgatttacaataaagtacaatataccctacataattcaacagtcatcttttaaagaa-tcaatcaaatggttaaaattaaaaa-att 32979269  T
Q  140 taataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaataaaggtaa 227  Q
    ||||| ||  ||||||| |||| |||||||||| |||||| |||| | ||| |||||||||||||||||||| |||||| | ||||||    
T  32979268 taatacggtctatggtgaaccacctttaaatatagttcaccttagtcttttaatgttaaaaactaacggagaggaccaaaagaggtaa 32979181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 31638409 - 31638187
Alignment:
Q  18 gaagcagaagatgaatcgattttattaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatca 117  Q
    |||| ||||||||||| ||||||||||||||| |||||||||||        ||||||  || |||| ||||||| ||| |||||||| |||| ||||||    
T  31638409 gaagaagaagatgaatggattttattaggtgttagtggttcaca--------caataggtcctacatgattcaactgtcttcttttaaagaaa-aaatca 31638319  T
Q  118 aatggttaaaattaaaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacat--ttgatgttaaaaactaacggagaagac 215  Q
    ||    |||||||||||| ||||| |||||| |||||| ||||| ||||||||||||||||| ||||| ||  |||||||||||||||| |||||| ||     
T  31638318 aag---taaaattaaaaa-atttagtaaggcgtatggtagaccacctttaaatatggttcaccttagatatatttgatgttaaaaactagcggagaggat 31638223  T
Q  216 caataaaggtaacagaagaagacataagggaccaat 251  Q
    ||| | |||||||| |||||||||||||| ||||||    
T  31638222 caaaagaggtaacataagaagacataaggaaccaat 31638187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 40 - 218
Target Start/End: Complemental strand, 8371498 - 8371322
Alignment:
Q  40 tattaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatatt 139  Q
    |||||||||| ||||||| ||| || ||||||||||||   | || || ||||  ||||||||||| |||| |||||||| ||||||||||||||| |||    
T  8371498 tattaggtgttagtggtttacaatagaatacaatagactatatatgatccaacaatcctcttttaaagaaa-aaatcaaagggttaaaattaaaaa-att 8371401  T
Q  140 taataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaa 218  Q
    || |||||   ||||||||||| || ||| || ||||| ||||||| ||||||||||||||||||||||||| ||||||    
T  8371400 tactaaggtccatggtggaccacctctaagtacggttcgctttagatatttgatgttaaaaactaacggagaggaccaa 8371322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 7483262 - 7483325
Alignment:
Q  71 aatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaa 135  Q
    |||||||||||||| ||||||||||||||||||||  ||| ||||||||||| ||||||||||||    
T  7483262 aatagaccccacatgattcaacggtcctcttttaa-caaaaaaatcaaatggataaaattaaaaa 7483325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 107 - 218
Target Start/End: Original strand, 12062288 - 12062398
Alignment:
Q  107 gaaataaatcaaatggttaaaattaaaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaac 206  Q
    |||| ||||||||||||||||| || ||  ||||||||||| |||||||||| || || ||||  |||||||| |||||||||| | ||||||||||||     
T  12062288 gaaaaaaatcaaatggttaaaaatacaag-atttaataaggtatatggtggatcacctataaagttggttcaccttagacatttaaggttaaaaactaat 12062386  T
Q  207 ggagaagaccaa 218  Q
    ||| | ||||||    
T  12062387 ggaaatgaccaa 12062398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 218
Target Start/End: Complemental strand, 19622172 - 19622107
Alignment:
Q  153 ggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaa 218  Q
    ||||||||| ||||||| || |||||| ||| |||||||||||| |||||||||||||| ||||||    
T  19622172 ggtggaccacctttaaacatagttcaccttaaacatttgatgttgaaaactaacggagaggaccaa 19622107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 164
Target Start/End: Original strand, 20314647 - 20314721
Alignment:
Q  89 caacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatatttaataaggcatatggtggaccatct 164  Q
    ||||||||||||||| |  ||||||||||||||||| |||||||| | | |||||||||  |||||||||| ||||    
T  20314647 caacggtcctcttttgaaaaaataaatcaaatggtttaaattaaata-aattaataaggtctatggtggactatct 20314721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 218
Target Start/End: Complemental strand, 23560007 - 23559921
Alignment:
Q  132 aaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaa 218  Q
    |||| ||||||||||   |||||||||||| || ||||  |||||||  ||||||| || | |||||||||||||||||| ||||||    
T  23560007 aaaagatttaataagatctatggtggaccacctataaagttggttcatcttagacaattaaggttaaaaactaacggagaggaccaa 23559921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 206
Target Start/End: Original strand, 24753462 - 24753504
Alignment:
Q  164 tttaaatatggttcactttagacatttgatgttaaaaactaac 206  Q
    |||||| ||||||||| |||||||||||| |||||||||||||    
T  24753462 tttaaagatggttcaccttagacatttgaagttaaaaactaac 24753504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 17345433 - 17345381
Alignment:
Q  197 aaaaactaacggagaagaccaataaaggtaacagaagaagacataagggaccaa 250  Q
    ||||||||||||||| |||||| ||||||||||||||||||  ||||| |||||    
T  17345433 aaaaactaacggagaggaccaa-aaaggtaacagaagaagatttaaggaaccaa 17345381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 206
Target Start/End: Original strand, 48867344 - 48867432
Alignment:
Q  117 aaatggttaaaattaaaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaac 206  Q
    ||||||||||||||| |||| |||||||| |  |||||| ||||| ||  |||  |||||||| |||||||||| | |||||||||||||    
T  48867344 aaatggttaaaattacaaat-tttaataaagtctatggtagaccacctacaaagttggttcaccttagacatttaaggttaaaaactaac 48867432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 32974213 - 32974269
Alignment:
Q  194 gttaaaaactaacggagaagaccaataaaggtaacagaagaagacataagggaccaa 250  Q
    |||||||  ||||||||| |||||| | ||||||| | |||||||||||||||||||    
T  32974213 gttaaaatgtaacggagatgaccaaaagaggtaacggcagaagacataagggaccaa 32974269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 134; Significance: 7e-70; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 4512406 - 4512175
Alignment:
Q  18 gaagcagaagatgaatcgattttattaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatca 117  Q
    |||| ||||||||||| ||||||||||||||||| |||||||||||||| || |||||||||||||| ||||||||||| |||||||| |||| ||||||    
T  4512406 gaagaagaagatgaattgattttattaggtgtgaatggttcacagtaaagtataatagaccccacatgattcaacggtcatcttttaaagaaa-aaatca 4512308  T
Q  118 aatggttaaaattaaaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagacca 217  Q
    |||||| ||||||||||| ||| |||||||||||||||||||||  ||| |||||||||||| ||||| ||||||||||||||||||| ||||| |||||    
T  4512307 aatggtcaaaattaaaaaaatt-aataaggcatatggtggaccactttttaatatggttcaccttagatatttgatgttaaaaactaatggagaggacca 4512209  T
Q  218 ataaaggtaacagaagaagacataagggaccaat 251  Q
    | | ||||||| |||||||||| |||||||||||    
T  4512208 aaagaggtaacggaagaagacacaagggaccaat 4512175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 14714792 - 14714569
Alignment:
Q  18 gaagcagaagatgaatcgattttattaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatca 117  Q
    |||| |||||||||||  |||||||||||||| ||||||||||||||||||||||||||| | |||| ||||||||||| |||||||| |||| ||||||    
T  14714792 gaagaagaagatgaatgaattttattaggtgttagtggttcacagtaaaatacaatagactctacatgattcaacggtcatcttttaaagaaa-aaatca 14714694  T
Q  118 aatggttaaaattaaaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagacca 217  Q
    |||||||  ||||||||| ||| |||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  14714693 aatggttgcaattaaaaaaatt-aataaggcgtatggtggaccacctttaaatatggttcaccttagacatttgatgttaaaaactaacggagaggacca 14714595  T
Q  218 ataaaggtaacagaagaagacataag 243  Q
    | |  |||||| ||||||||||||||    
T  14714594 aaagtggtaacggaagaagacataag 14714569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 41 - 218
Target Start/End: Complemental strand, 23177951 - 23177776
Alignment:
Q  41 attaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatattt 140  Q
    ||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||| | ||||| |||| |||||||||||||||||||| ||| ||||    
T  23177951 attaggtgttagtggttcacagtaaagtacaatagacccgacataattcaacggtccgcatttaaagaaa-aaatcaaatggttaaaattagaaa-attt 23177854  T
Q  141 aataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaa 218  Q
    ||||||   || |||| |||||||||||||||||||||  |||||  ||| |||||||||||||||||||| ||||||    
T  23177853 aataagatctacggtgaaccatctttaaatatggttcatcttagattttttatgttaaaaactaacggagaggaccaa 23177776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 41 - 218
Target Start/End: Complemental strand, 23589208 - 23589033
Alignment:
Q  41 attaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatattt 140  Q
    ||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||| | ||||| |||| |||||||||||||||||||| ||| ||||    
T  23589208 attaggtgttagtggttcacagtaaagtacaatagacccgacataattcaacggtccgcatttaaagaaa-aaatcaaatggttaaaattagaaa-attt 23589111  T
Q  141 aataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaa 218  Q
    ||||||   || |||| |||||||||||||||||||||  |||||  ||| |||||||||||||||||||| ||||||    
T  23589110 aataagatctacggtgaaccatctttaaatatggttcatcttagattttttatgttaaaaactaacggagaggaccaa 23589033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 107 - 251
Target Start/End: Complemental strand, 26205225 - 26205082
Alignment:
Q  107 gaaataaatcaaatggttaaaattaaaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaac 206  Q
    |||| ||||||||||||||||||| |||| ||| |||||||||||||||||||||  ||||| |||||||||| ||||||||||||||||||||||||||    
T  26205225 gaaaaaaatcaaatggttaaaatttaaaaaatt-aataaggcatatggtggaccacttttaagtatggttcaccttagacatttgatgttaaaaactaac 26205127  T
Q  207 ggagaagaccaataaaggtaacagaagaagacataagggaccaat 251  Q
    ||||| ||||||   ||||||| ||||||||||||||||||||||    
T  26205126 ggagaggaccaaacgaggtaacggaagaagacataagggaccaat 26205082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 42 - 218
Target Start/End: Complemental strand, 12853162 - 12852988
Alignment:
Q  42 ttaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatattta 141  Q
    |||||||| ||||||| |||| ||| |||||||||| | ||||||||||| ||||||||||||| ||| |||||||||||||||||||| |||| |||||    
T  12853162 ttaggtgttagtggttgacaggaaagtacaatagactctacataattcaatggtcctcttttaaagaa-taaatcaaatggttaaaattcaaaa-attta 12853065  T
Q  142 ataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaa 218  Q
    ||| ||  ||||||| |||| ||||||||||||||||| |||||  ||||||||||||| |||||||||| ||||||    
T  12853064 atacggtctatggtgaaccacctttaaatatggttcaccttagatttttgatgttaaaatctaacggagatgaccaa 12852988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 55 - 217
Target Start/End: Original strand, 3528117 - 3528278
Alignment:
Q  55 gttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatatttaataaggcatatgg 154  Q
    |||||||||||||||||||| |||| ||||||||||| ||||||||||||| | || ||||||| |||||||||||||||| |||||||| ||  |||||    
T  3528117 gttcacagtaaaatacaatacaccctacataattcaatggtcctcttttaaaggaaaaaatcaactggttaaaattaaaaa-atttaatacggtctatgg 3528215  T
Q  155 tggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagacca 217  Q
    || |||| ||||||||||||||||| |||||| |||| | |||||||||||  ||||||||||    
T  3528216 tgaaccacctttaaatatggttcaccttagacttttgctattaaaaactaatagagaagacca 3528278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 42 - 193
Target Start/End: Original strand, 6708819 - 6708968
Alignment:
Q  42 ttaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatattta 141  Q
    |||||||| |||||||||||| ||| | |||||||||| |||||||||||||||||| |||||| | ||||||||||||||||||||||| ||| |||||    
T  6708819 ttaggtgttagtggttcacaggaaagtgcaatagaccctacataattcaacggtccttttttaaag-aataaatcaaatggttaaaattagaaa-attta 6708916  T
Q  142 ataaggcatatggtggaccatctttaaatatggttcactttagacatttgat 193  Q
    ||| ||  ||||||| |||| ||||||||||||||||| | |||| ||||||    
T  6708917 atacggtttatggtgaaccacctttaaatatggttcacctcagacttttgat 6708968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 40 - 218
Target Start/End: Original strand, 41296292 - 41296468
Alignment:
Q  40 tattaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatatt 139  Q
    |||||||||| |||| |||||| |||||||||||||| || |||| ||  |||  ||||||||||| |||| |||||||| |||||| |||||||| |||    
T  41296292 tattaggtgttagtgattcacactaaaatacaatagatcctacatgatcgaacaatcctcttttaaagaaa-aaatcaaaaggttaatattaaaaa-att 41296389  T
Q  140 taataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaa 218  Q
    || ||||    |||||| |||| |||| |||||| ||||||||||||||||| ||||||||||||||||||| ||||||    
T  41296390 tactaagatccatggtgcaccaccttttaatatgattcactttagacatttggtgttaaaaactaacggagaggaccaa 41296468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 40 - 228
Target Start/End: Original strand, 21010336 - 21010522
Alignment:
Q  40 tattaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatatt 139  Q
    |||||||||| ||||||||| | ||||||||||||||||| || | || ||||  |  |||||| | |||| |||| ||| |||||||||| |||| |||    
T  21010336 tattaggtgttagtggttcataataaaatacaatagaccctacctgatccaacaattatctttttaagaaa-aaattaaagggttaaaatttaaaa-att 21010433  T
Q  140 taataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaataaaggtaac 228  Q
    ||||||||  |||| | ||||| ||||||||| ||||||| |||||||||||||||||| ||||||| |||| |||||| ||| |||||    
T  21010434 taataaggtttatgatagaccacctttaaatacggttcacattagacatttgatgttaacaactaacagagaggaccaaaaaatgtaac 21010522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 112 - 201
Target Start/End: Complemental strand, 3532401 - 3532313
Alignment:
Q  112 aaatcaaatggttaaaattaaaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaa 201  Q
    |||||||||||||||||| |||| | |||| ||| ||||||||||||||| ||||||||||||||||| ||| |||||| ||||||||||    
T  3532401 aaatcaaatggttaaaat-aaaattttttagtaatgcatatggtggaccacctttaaatatggttcaccttaaacatttaatgttaaaaa 3532313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 68 - 201
Target Start/End: Original strand, 7983561 - 7983692
Alignment:
Q  68 tacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatatttaataaggcatatggtggaccatcttta 167  Q
    |||||||||||| |||| || ||||   |||||||||| |||| |||||||| || | ||||| |||| ||||||||||   |||||||||||| |||||    
T  7983561 tacaatagaccctacatcatccaacaaacctcttttaaagaaa-aaatcaaaaggatgaaatttaaaa-atttaataagatctatggtggaccaccttta 7983658  T
Q  168 aatatggttcactttagacatttgatgttaaaaa 201  Q
    || ||||||||| |||||||||||||||||||||    
T  7983659 aacatggttcaccttagacatttgatgttaaaaa 7983692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 95 - 218
Target Start/End: Original strand, 29424505 - 29424626
Alignment:
Q  95 tcctcttttaatgaaataaatcaaatggttaaaattaaaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatg 194  Q
    ||||||||||| | || |||||||| |||||||||| |||| |||||||||||  |||| ||||||| ||||||| ||||||||  ||||||||||||||    
T  29424505 tcctcttttaaaggaa-aaatcaaaaggttaaaatttaaaa-atttaataaggtctatgatggaccacctttaaacatggttcatcttagacatttgatg 29424602  T
Q  195 ttaaaaactaacggagaagaccaa 218  Q
    |||  ||||||| |||| ||||||    
T  29424603 ttagtaactaacagagaggaccaa 29424626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 14714960 - 14714901
Alignment:
Q  18 gaagcagaagatgaatcgattttattaggtgtgagtggttcacagtaaaatacaatagac 77  Q
    |||| |||||||||||  |||||||||||||| |||||||||||||||||||||||||||    
T  14714960 gaagaagaagatgaatgaattttattaggtgttagtggttcacagtaaaatacaatagac 14714901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 138 - 209
Target Start/End: Complemental strand, 45047524 - 45047453
Alignment:
Q  138 tttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacgga 209  Q
    |||| ||||| | ||||||||||| ||||||||||||||||| ||||||||||||| ||||||| |||||||    
T  45047524 tttactaaggtacatggtggaccacctttaaatatggttcaccttagacatttgatattaaaaattaacgga 45047453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 209
Target Start/End: Original strand, 25570798 - 25570875
Alignment:
Q  132 aaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacgga 209  Q
    ||||||||||||||||  |||||||||||| || ||||  |||||||| |||||||||| |  |||||||||||||||    
T  25570798 aaaatatttaataaggtctatggtggaccacctataaagttggttcaccttagacatttaagtttaaaaactaacgga 25570875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 227
Target Start/End: Original strand, 37868973 - 37869062
Alignment:
Q  137 atttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaataaaggtaa 227  Q
    |||||||||||  ||| |||||||| || ||||  ||| |||| |||||||||| | ||||||||| ||||||||||||||| ||||||||    
T  37868973 atttaataaggtctattgtggaccacctataaagttggctcaccttagacatttaaggttaaaaacaaacggagaagaccaa-aaaggtaa 37869062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 218
Target Start/End: Complemental strand, 14509391 - 14509311
Alignment:
Q  138 tttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaa 218  Q
    ||||||||||  |||||||||||| || ||||  ||||| || |||||||||| | |||||||| ||||||||| ||||||    
T  14509391 tttaataaggtctatggtggaccacctataaagttggtttaccttagacatttaaggttaaaaattaacggagaggaccaa 14509311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 26205274 - 26205230
Alignment:
Q  18 gaagcagaagatgaatcgattttattaggtgtgagtggttcacag 62  Q
    |||| |||||||||||| |||||||||||||||| ||||||||||    
T  26205274 gaagaagaagatgaatcaattttattaggtgtgactggttcacag 26205230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 250
Target Start/End: Complemental strand, 2305661 - 2305610
Alignment:
Q  199 aaactaacggagaagaccaataaaggtaacagaagaagacataagggaccaa 250  Q
    ||||||||||||| |||||| | ||||||| | |||||||||||||||||||    
T  2305661 aaactaacggagaggaccaaaagaggtaacggcagaagacataagggaccaa 2305610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 8537151 - 8537081
Alignment:
Q  181 ttagacatttgatgttaaaaactaacggagaagaccaataaaggtaacagaagaagacataagggaccaat 251  Q
    |||||||||| | |||||||||||||||||| |||||| | || ||||   |||| |||||||||||||||    
T  8537151 ttagacatttaaggttaaaaactaacggagatgaccaaaatagataacgacagaatacataagggaccaat 8537081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 211
Target Start/End: Complemental strand, 10367422 - 10367348
Alignment:
Q  137 atttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggaga 211  Q
    |||||||||||  ||| |||||||| || ||||  |||||||| |||||||||| | ||||||||| ||||||||    
T  10367422 atttaataaggtctattgtggaccacctataaagttggttcaccttagacatttaaggttaaaaacaaacggaga 10367348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 34513022 - 34512974
Alignment:
Q  112 aaatcaaatggttaaaattaaaaatatttaataaggcatatggtggacca 161  Q
    ||||||||| ||| |||||||||| ||||||||||| |||||||||||||    
T  34513022 aaatcaaatagtttaaattaaaaa-atttaataaggtatatggtggacca 34512974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 2306651 - 2306707
Alignment:
Q  194 gttaaaaactaacggagaagaccaataaaggtaacagaagaagacataagggaccaa 250  Q
    |||| ||||||||||||| |||||| | ||||||| | ||||||||||| |||||||    
T  2306651 gttacaaactaacggagaggaccaaaagaggtaacggcagaagacataatggaccaa 2306707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 7490165 - 7490209
Alignment:
Q  174 gttcactttagacatttgatgttaaaaactaacggagaagaccaa 218  Q
    |||||| |||||||||| | |||||||||||||||| ||||||||    
T  7490165 gttcaccttagacatttaaggttaaaaactaacggataagaccaa 7490209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 23 - 251
Target Start/End: Original strand, 207619 - 207845
Alignment:
Q  23 agaagatgaatcgattttattaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatgg 122  Q
    ||||||||||| |||||||| || ||| |||||||||||||||| |||||||||| | || | |||||| |||| | |||||| |||| |||||||||||    
T  207619 agaagatgaatggattttatcagatgttagtggttcacagtaaagtacaatagactcaacttgattcaatggtcttgttttaaagaaa-aaatcaaatgg 207717  T
Q  123 ttaaaattaaaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaataaa 222  Q
    ||||||||||||| ||||| ||||||||||||||||||| ||||||| ||||||||| | ||||||||||||||||||||||||||||| |||||| | |    
T  207718 ttaaaattaaaaa-atttagtaaggcatatggtggaccacctttaaacatggttcacctaagacatttgatgttaaaaactaacggagaggaccaaaaga 207816  T
Q  223 ggtaacagaagaagacataagggaccaat 251  Q
    | |||| ||||||||||||||||| ||||    
T  207817 gataacggaagaagacataagggatcaat 207845  T

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Target: scaffold0084 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 13020 - 13237
Alignment:
Q  18 gaagcagaagatgaatcgattttattaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatca 117  Q
    |||| ||||||||||| ||||||||||| ||| ||||||| ||| |||| |||||||||||| ||| |||||||| |||||||||||| |||| ||||||    
T  13020 gaagaagaagatgaatggattttattagatgttagtggttgacaataaagtacaatagaccctacaaaattcaacagtcctcttttaaagaaa-aaatca 13118  T
Q  118 aatggttaaaattaaaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagacca 217  Q
    ||||||||| ||||||||| |||| || || ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||| | |||||    
T  13119 aatggttaagattaaaaat-tttagtagggtatatggtggaccatctttaaatatggttcaccttagacatttgatgttaaaacctaatggataggacca 13217  T
Q  218 ataaaggtaacagaagaaga 237  Q
    | | ||||||| ||||||||    
T  13218 aaagaggtaacggaagaaga 13237  T

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Target: scaffold0084; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 11829 - 11776
Alignment:
Q  197 aaaaactaacggagaagaccaataaaggtaacagaagaagacataagggaccaa 250  Q
    ||||||||||||||| |||||| | ||||||| | |||||||||||||||||||    
T  11829 aaaaactaacggagaggaccaaaataggtaactggagaagacataagggaccaa 11776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 6e-49; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 40 - 250
Target Start/End: Complemental strand, 21387915 - 21387707
Alignment:
Q  40 tattaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatatt 139  Q
    |||||||||| ||| ||| |||||||| |||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||    
T  21387915 tattaggtgttagtcgtttacagtaaagtacaatagaccctacataattcaacggtcctcttttaaagaaa-aaatcaaatggttaaaattaaaaa-att 21387818  T
Q  140 taataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaataaaggtaacagaagaagaca 239  Q
    ||||| ||| ||||||| |||| ||||||||||| ||||| |||||  ||||||||||||||||||| || | |||||| | ||||||| | ||||||      
T  21387817 taatacggcctatggtgaaccacctttaaatatgtttcaccttagagttttgatgttaaaaactaacagacaggaccaaaagaggtaacggcagaagatt 21387718  T
Q  240 taagggaccaa 250  Q
    || ||||||||    
T  21387717 tatgggaccaa 21387707  T

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Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 58 - 228
Target Start/End: Complemental strand, 18693957 - 18693790
Alignment:
Q  58 cacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatatttaataaggcatatggtgg 157  Q
    ||||||||| ||||||||||   ||||||||||||||||||||||||| ||||  ||||||||| ||||||||||||| |||||||| ||  |||||||     
T  18693957 cacagtaaagtacaatagactatacataattcaacggtcctcttttaaagaaa--aatcaaatgattaaaattaaaaa-atttaatacggtctatggtga 18693861  T
Q  158 accatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaataaaggtaac 228  Q
    |||| ||||| ||||||||||| |||||  ||||||||||||||||||| |||| |||||| | |||||||    
T  18693860 accacctttatatatggttcaccttagagttttgatgttaaaaactaacagagaggaccaaaagaggtaac 18693790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 63 - 201
Target Start/End: Complemental strand, 7426896 - 7426760
Alignment:
Q  63 taaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatatttaataaggcatatggtggaccat 162  Q
    ||||||||| ||||||| |||| || ||||   |||||||||| |||| |||||||| |||| ||||| |||| |||||||||||  ||||||||||||     
T  7426896 taaaatacagtagaccctacatcatccaacaaacctcttttaaagaaa-aaatcaaaaggttgaaatttaaaa-atttaataaggtctatggtggaccac 7426799  T
Q  163 ctttaaatatggttcactttagacatttgatgttaaaaa 201  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  7426798 ctttaaatatgattcaccttagacatttgatgttaaaaa 7426760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 211
Target Start/End: Original strand, 2167443 - 2167522
Alignment:
Q  132 aaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggaga 211  Q
    |||| |||||||||||  ||||||||||||||| ||||  |||||||| |||||||||| | ||||||||||||| ||||    
T  2167443 aaaagatttaataaggtctatggtggaccatctataaagttggttcaccttagacatttaaggttaaaaactaacagaga 2167522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 211
Target Start/End: Complemental strand, 5383130 - 5383051
Alignment:
Q  132 aaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggaga 211  Q
    |||| |||||||||||  |||||||||||| || ||||  || ||||| |||||||||| | ||||||||||||||||||    
T  5383130 aaaagatttaataaggtctatggtggaccacctataaagttgattcaccttagacatttaaggttaaaaactaacggaga 5383051  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 218
Target Start/End: Complemental strand, 40058206 - 40058120
Alignment:
Q  132 aaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaa 218  Q
    |||| |||||||||||  |||||||||| |  | ||||  |||||||| |||||||||| |  ||||||||||||||||| ||||||    
T  40058206 aaaagatttaataaggtctatggtggactacttataaagttggttcaccttagacatttaagattaaaaactaacggagatgaccaa 40058120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 204
Target Start/End: Original strand, 7345350 - 7345390
Alignment:
Q  164 tttaaatatggttcactttagacatttgatgttaaaaacta 204  Q
    |||||||||||||||| |||||  |||||||||||||||||    
T  7345350 tttaaatatggttcaccttagagttttgatgttaaaaacta 7345390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 41208 - 41017
Alignment:
Q  18 gaagcagaagatgaatcgattttattaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatca 117  Q
    |||| ||||||||||| ||||   |||||||| |||||||||||||||| ||||||| | || |||| ||||||||||  ||||||||  ||| ||||||    
T  41208 gaagaagaagatgaatggattaacttaggtgttagtggttcacagtaaagtacaataaatcctacatgattcaacggttatcttttaaaaaaa-aaatca 41110  T
Q  118 aatggttaaaattaaaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggaga 211  Q
    |||||||||||| ||||| ||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  41109 aatggttaaaataaaaaa-atttagtaaggcatatggtggaccacctttaaatatggttcaccttagacatttgatgttaaaaactaacagaga 41017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 40 - 227
Target Start/End: Original strand, 39739 - 39924
Alignment:
Q  40 tattaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatatt 139  Q
    |||||| ||| |||||||||||||||| |||||||||||| ||||||||||| |||| |||||||| |||| |||||||||||||||||||||||| |||    
T  39739 tattagatgttagtggttcacagtaaagtacaatagaccctacataattcaatggtcatcttttaaagaaa-aaatcaaatggttaaaattaaaaa-att 39836  T
Q  140 taataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaataaaggtaa 227  Q
    ||||| ||   |||||| |||| ||||||||||| ||||| |||||| ||||||||||||||||||| |||| |||||| | ||||||    
T  39837 taatacggtccatggtgaaccacctttaaatatgattcaccttagacttttgatgttaaaaactaacagagaggaccaaaagaggtaa 39924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1974 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold1974
Description:

Target: scaffold1974; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 40 - 218
Target Start/End: Original strand, 466 - 642
Alignment:
Q  40 tattaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatatt 139  Q
    |||||||||| | || ||||||||||| || ||||||||| ||||||||||||||| ||| ||||| |||| |||||||||||||||||||| ||| |||    
T  466 tattaggtgttaatgattcacagtaaagtataatagacccgacataattcaacggttctcatttaaagaaa-aaatcaaatggttaaaattagaaa-att 563  T
Q  140 taataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaa 218  Q
    |||||||   || |||| |||||||||||||||||||||| |||||  ||| |||||||||||||||||||| ||||||    
T  564 taataagatctacggtgaaccatctttaaatatggttcaccttagattttttatgttaaaaactaacggagatgaccaa 642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1878 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold1878
Description:

Target: scaffold1878; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 40 - 218
Target Start/End: Complemental strand, 808 - 632
Alignment:
Q  40 tattaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatatt 139  Q
    |||||||||| | || ||||||||||| || ||||||||| ||||||||||||||| ||| ||||| |||| |||||||||||||||||||| ||| |||    
T  808 tattaggtgttaatgattcacagtaaagtataatagacccgacataattcaacggttctcatttaaagaaa-aaatcaaatggttaaaattagaaa-att 711  T
Q  140 taataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaa 218  Q
    |||||||   || |||| |||||||||||||||||||||| |||||  ||| |||||||||||||||||||| ||||||    
T  710 taataagatctacggtgaaccatctttaaatatggttcaccttagattttttatgttaaaaactaacggagatgaccaa 632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 53 - 251
Target Start/End: Original strand, 18139337 - 18139534
Alignment:
Q  53 tggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaat-ggttaaaattaaaaatatttaataaggcata 151  Q
    ||||||||||||||||||||||||||| |||| || ||||  ||||||||||| |||| ||||||||  |||||||||| |||| ||||||||| |  ||    
T  18139337 tggttcacagtaaaatacaatagaccctacatgatccaacaatcctcttttaaagaaa-aaatcaaaaaggttaaaatttaaaa-atttaataatgtcta 18139434  T
Q  152 tggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaataaaggtaacagaagaagacataagggaccaat 251  Q
    ||||||| |||||||||| ||||||||| ||||||||||||||||||||||||| ||||| |||||| | |   ||| | |||||| |||||||||||||    
T  18139435 tggtggatcatctttaaacatggttcaccttagacatttgatgttaaaaactaatggagaggaccaaaacaataaacggcagaagatataagggaccaat 18139534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 63 - 220
Target Start/End: Original strand, 33801878 - 33802033
Alignment:
Q  63 taaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatatttaataaggcatatggtggaccat 162  Q
    ||||| ||||||||||| |||| || ||||  ||||||||||| |||| |||||||| | |||||||| |||| ||||||||||| |||||||||||||     
T  33801878 taaaaaacaatagaccctacatgatccaacaatcctcttttaaagaaaaaaatcaaaag-ttaaaatttaaaa-atttaataaggtatatggtggaccac 33801975  T
Q  163 ctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaata 220  Q
    ||| ||  |||||  || ||||| ||||||||||||||||||||||||| ||||||||    
T  33801976 cttgaatcatggtctaccttagatatttgatgttaaaaactaacggagaggaccaata 33802033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 40 - 123
Target Start/End: Original strand, 34084072 - 34084154
Alignment:
Q  40 tattaggtgtgagtggttcacagtaaaatacaatagaccccacataattcaacggtcctcttttaatgaaataaatcaaatggt 123  Q
    |||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||| ||||| |||| ||||||||||||    
T  34084072 tattaggtgttagtggttcacagtaaagtacaatagaccctacataattcaacggtcctcatttaaagaaa-aaatcaaatggt 34084154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 13507121 - 13507178
Alignment:
Q  154 gtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggaga 211  Q
    |||||||| ||||||||||||||||| ||| |||||||||||||||||||||| ||||    
T  13507121 gtggaccacctttaaatatggttcaccttaaacatttgatgttaaaaactaacagaga 13507178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 14328707 - 14328788
Alignment:
Q  137 atttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaa 218  Q
    |||||||||||  |||||||||||| || ||||  |||||||| |||||||||| | |||||||| ||||||||| ||||||    
T  14328707 atttaataaggtctatggtggaccacctataaagttggttcaccttagacatttaaggttaaaaagtaacggagaggaccaa 14328788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 14421717 - 14421798
Alignment:
Q  137 atttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaa 218  Q
    |||||||||||  |||||||||||| || ||||  |||||||| |||||||||| | |||||||| ||||||||| ||||||    
T  14421717 atttaataaggtctatggtggaccacctataaagttggttcaccttagacatttaaggttaaaaagtaacggagaggaccaa 14421798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 31738533 - 31738465
Alignment:
Q  150 tatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaa 218  Q
    ||||||||||| ||| ||||  |||||||| |||||||||| | |||||||||||||||||| ||||||    
T  31738533 tatggtggaccgtctataaagttggttcacattagacatttaaggttaaaaactaacggagaggaccaa 31738465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 218
Target Start/End: Original strand, 293572 - 293654
Alignment:
Q  136 tatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaagaccaa 218  Q
    ||||||||||||  |||||||||||| || ||||  |||||||| |||||||||| | ||||||||  |||||||| ||||||    
T  293572 tatttaataaggtctatggtggaccacctataaagttggttcaccttagacatttaaggttaaaaataaacggagaggaccaa 293654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 18773777 - 18773724
Alignment:
Q  197 aaaaactaacggagaagaccaataaaggtaacagaagaagacataagggaccaa 250  Q
    |||||||||| |||| |||||| ||||||||||  ||| |||||||||||||||    
T  18773777 aaaaactaacagagaggaccaaaaaaggtaacacgagaggacataagggaccaa 18773724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 218
Target Start/End: Original strand, 27440086 - 27440189
Alignment:
Q  114 atcaaatggttaaaattaaaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaag 213  Q
    |||||| ||||||||||||||| ||||||||| |  |||||| ||||| ||  |||  |  ||||| |||||||||| | |||||||| ||||||||| |    
T  27440086 atcaaacggttaaaattaaaaa-atttaataaagtttatggtagaccacctacaaagttaattcaccttagacatttaaagttaaaaattaacggagagg 27440184  T
Q  214 accaa 218  Q
    |||||    
T  27440185 accaa 27440189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 112 - 218
Target Start/End: Original strand, 9387 - 9492
Alignment:
Q  112 aaatcaaatggttaaaattaaaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggaga 211  Q
    |||||||||||||||||||| ||| ||||||||||   || |||| |||||||||||||||||||||| |||||  ||| ||||||||||||||||||||    
T  9387 aaatcaaatggttaaaattagaaa-atttaataagatctacggtgaaccatctttaaatatggttcaccttagattttttatgttaaaaactaacggaga 9485  T
Q  212 agaccaa 218  Q
     ||||||    
T  9486 tgaccaa 9492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 40 - 205
Target Start/End: Original strand, 56536 - 56701
Alignment:
Q  40 tattaggtgtgagtggttcacagtaaaatacaatagacccc-acataattcaacggtcctcttttaatgaaataaatcaaatggttaaaattaaaaatat 138  Q
    ||||||||||  |||||| ||| |||||||||||||| | | || | || ||||  || |||||||| |||| |||||||| |||||||||| |||| ||    
T  56536 tattaggtgttggtggtttacaataaaatacaatagaacactacgtgatccaacaatcatcttttaaagaaaaaaatcaaaaggttaaaatttaaaa-at 56634  T
Q  139 ttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaa 205  Q
    |||||||||  | |||||||||||||||||| || |||  | ||||| |||||||||||||||||||    
T  56635 ttaataaggtctttggtggaccatctttaaacatagtttcccttagatatttgatgttaaaaactaa 56701  T

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Target: scaffold0045 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 114 - 218
Target Start/End: Original strand, 77090 - 77195
Alignment:
Q  114 atcaaatggttaaaattaaaaatatttaataaggcatatggtggaccatctttaaatatggttcactttag--acatttgatgttaaaaactaacggaga 211  Q
    ||||||||||||||||||||   | ||| |||||   ||||||||||| ||||||||||||||||| ||||  ||||||||||| ||| | |||||||||    
T  77090 atcaaatggttaaaattaaatgaactta-taaggtcaatggtggaccacctttaaatatggttcaccttagacacatttgatgtcaaacattaacggaga 77188  T
Q  212 agaccaa 218  Q
    |||||||    
T  77189 agaccaa 77195  T

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Target: scaffold0122 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 211
Target Start/End: Complemental strand, 16127 - 16054
Alignment:
Q  138 tttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggaga 211  Q
    ||||||||||  ||||||||||||||| ||||  |||||||  |||||||||| | ||||||||||||||||||    
T  16127 tttaataaggtctatggtggaccatctataaagttggttcatcttagacatttaaggttaaaaactaacggaga 16054  T

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Target: scaffold0046 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 24808 - 24861
Alignment:
Q  197 aaaaactaacggagaagaccaataaaggtaacagaagaagacataagggaccaa 250  Q
    ||||||||||||||| |||||| | ||||||| || ||||||||||||||||||    
T  24808 aaaaactaacggagatgaccaaaataggtaacggaggaagacataagggaccaa 24861  T

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Target: scaffold0046; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 23725 - 23674
Alignment:
Q  23 agaagatgaatcgattttattaggtgtgagtggttcacagtaaaatacaata 74  Q
    ||||||||||| ||||||||||| ||| ||||||| |||||||| |||||||    
T  23725 agaagatgaatggattttattagatgttagtggttgacagtaaagtacaata 23674  T

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Target: scaffold0002 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 250
Target Start/End: Original strand, 458455 - 458506
Alignment:
Q  199 aaactaacggagaagaccaataaaggtaacagaagaagacataagggaccaa 250  Q
    ||||||||||||| |||||| | || |||||| |||||||||||||||||||    
T  458455 aaactaacggagaggaccaaaagagataacagcagaagacataagggaccaa 458506  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 218
Target Start/End: Complemental strand, 47275 - 47172
Alignment:
Q  114 atcaaatggttaaaattaaaaatatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaacggagaag 213  Q
    |||||| ||||||||||||||| ||||||||| |  |||||| ||||| ||  |||  |  ||||| |||||||||| | |||||||| ||||||||| |    
T  47275 atcaaacggttaaaattaaaaa-atttaataaagtttatggtagaccacctacaaagttaattcaccttagacatttaaagttaaaaattaacggagagg 47177  T
Q  214 accaa 218  Q
    |||||    
T  47176 accaa 47172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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