View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0615_low_2 (Length: 298)

Name: NF0615_low_2
Description: NF0615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0615_low_2
NF0615_low_2
[»] chr4 (14 HSPs)
chr4 (69-150)||(29908145-29908225)
chr4 (167-211)||(29908083-29908127)
chr4 (167-211)||(7230307-7230351)
chr4 (178-211)||(21114306-21114339)
chr4 (167-211)||(10261759-10261803)
chr4 (167-211)||(20799384-20799428)
chr4 (167-211)||(21562652-21562696)
chr4 (167-211)||(26926700-26926744)
chr4 (167-211)||(38374984-38375028)
chr4 (167-211)||(43330173-43330217)
chr4 (167-211)||(49041971-49042015)
chr4 (167-211)||(49385296-49385340)
chr4 (167-211)||(51450239-51450283)
chr4 (167-211)||(54294412-54294456)
[»] chr1 (9 HSPs)
chr1 (167-211)||(47417810-47417854)
chr1 (167-211)||(9639807-9639851)
chr1 (175-211)||(32950759-32950795)
chr1 (167-211)||(34521180-34521224)
chr1 (167-211)||(34595899-34595943)
chr1 (174-211)||(26755643-26755680)
chr1 (175-211)||(64676-64712)
chr1 (167-211)||(21638140-21638184)
chr1 (167-211)||(42045362-42045406)
[»] chr8 (12 HSPs)
chr8 (169-211)||(44794920-44794962)
chr8 (167-211)||(27587248-27587292)
chr8 (170-204)||(6248335-6248369)
chr8 (167-212)||(30176409-30176454)
chr8 (167-211)||(6447216-6447260)
chr8 (167-211)||(12748928-12748972)
chr8 (167-211)||(20665353-20665397)
chr8 (179-211)||(27718896-27718928)
chr8 (175-211)||(29652245-29652281)
chr8 (167-211)||(30550716-30550760)
chr8 (167-211)||(32051522-32051566)
chr8 (167-211)||(44215465-44215509)
[»] chr6 (10 HSPs)
chr6 (168-211)||(33824908-33824951)
chr6 (168-214)||(291391-291437)
chr6 (167-204)||(8916464-8916501)
chr6 (167-204)||(11982585-11982621)
chr6 (178-211)||(13496143-13496176)
chr6 (167-211)||(247686-247730)
chr6 (167-211)||(2726407-2726451)
chr6 (167-211)||(4450289-4450333)
chr6 (167-211)||(4467305-4467349)
chr6 (167-211)||(8569736-8569780)
[»] chr2 (11 HSPs)
chr2 (167-210)||(20017046-20017089)
chr2 (167-211)||(3708720-3708764)
chr2 (167-211)||(4056817-4056861)
chr2 (167-211)||(10735821-10735865)
chr2 (167-211)||(11868652-11868696)
chr2 (167-211)||(15447704-15447748)
chr2 (167-211)||(27848185-27848229)
chr2 (167-211)||(29544654-29544698)
chr2 (167-211)||(35360045-35360089)
chr2 (167-211)||(35820291-35820335)
chr2 (167-211)||(36359341-36359385)
[»] chr7 (12 HSPs)
chr7 (175-211)||(7670461-7670497)
chr7 (167-211)||(16198410-16198454)
chr7 (167-211)||(16537526-16537570)
chr7 (167-211)||(16628092-16628136)
chr7 (167-211)||(20763181-20763225)
chr7 (167-211)||(27462426-27462470)
chr7 (167-211)||(29488747-29488791)
chr7 (167-211)||(33232387-33232431)
chr7 (167-211)||(34284529-34284573)
chr7 (175-211)||(37516800-37516836)
chr7 (176-212)||(42095942-42095978)
chr7 (179-211)||(47342436-47342468)
[»] chr5 (4 HSPs)
chr5 (179-211)||(20688067-20688099)
chr5 (167-211)||(22522791-22522835)
chr5 (167-211)||(37462138-37462182)
chr5 (167-211)||(40715939-40715983)
[»] chr3 (8 HSPs)
chr3 (167-211)||(913590-913634)
chr3 (167-211)||(916466-916510)
chr3 (167-211)||(10498685-10498729)
chr3 (167-211)||(16792964-16793008)
chr3 (167-203)||(36623456-36623492)
chr3 (167-211)||(38130949-38130993)
chr3 (167-211)||(44075146-44075190)
chr3 (167-211)||(48849753-48849797)


Alignment Details
Target: chr4 (Bit Score: 62; Significance: 8e-27; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 69 - 150
Target Start/End: Complemental strand, 29908225 - 29908145
Alignment:
Q  69 ataggtgaaatcctatagatgaaaggtcaattgaataaaattaatgtatttgataaaattagctttagaaagtaaccgataa 150  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||    
T  29908225 ataggtgaaatcttatagatgaaaggtcaattgaataaaa-taatgtattttataaaattagctttagaaagtaatcgataa 29908145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 29908127 - 29908083
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||    
T  29908127 gtggtgatcgaggtttgaactccggaccttgcatatattatgcat 29908083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 7230351 - 7230307
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||| ||||||||||||| ||||||||||||||||| ||||||    
T  7230351 gtggtggccgaggtttgaaccccggaccttgcatatattatgcat 7230307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 211
Target Start/End: Original strand, 21114306 - 21114339
Alignment:
Q  178 ggtttgaactccggaccttgcatatatcatgcat 211  Q
    ||||||||| ||||||||||||||||||||||||    
T  21114306 ggtttgaaccccggaccttgcatatatcatgcat 21114339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 10261759 - 10261803
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||| ||| ||||||||||||||||||||||||| | ||||||    
T  10261759 gtggtggccggggtttgaactccggaccttgcatattttatgcat 10261803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 20799384 - 20799428
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||||||  ||||||||| ||||||||||||||||| ||||||    
T  20799384 gtggtgaccagggtttgaaccccggaccttgcatatattatgcat 20799428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 21562696 - 21562652
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||| ||| ||||||||||||||||||||||||| | ||||||    
T  21562696 gtggtggccggggtttgaactccggaccttgcatattttatgcat 21562652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 26926700 - 26926744
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||| ||| ||||||||||||||||||||||||| | ||||||    
T  26926700 gtggtggccggggtttgaactccggaccttgcatattttatgcat 26926744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 38375028 - 38374984
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||| ||| |||||||||||| |||||||||||||| ||||||    
T  38375028 gtggtggccggggtttgaactccagaccttgcatatattatgcat 38374984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 43330217 - 43330173
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||| ||| ||||||||||||||||||||||||| | ||||||    
T  43330217 gtggtggccggggtttgaactccggaccttgcatattttatgcat 43330173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 49041971 - 49042015
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||| ||| ||||||||| ||||||||||||||||| ||||||    
T  49041971 gtggtggccggggtttgaaccccggaccttgcatatattatgcat 49042015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 49385296 - 49385340
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||| ||||||||||||||||||| ||| ||||||| ||||||    
T  49385296 gtggtggccgaggtttgaactccggatcttacatatattatgcat 49385340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 51450283 - 51450239
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||| ||| ||||||||||||||||||||||||| | ||||||    
T  51450283 gtggtggccggggtttgaactccggaccttgcatatcttatgcat 51450239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 54294412 - 54294456
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||| ||| ||||||||| ||||||||||||||||| ||||||    
T  54294412 gtggtgtccggggtttgaaccccggaccttgcatatattatgcat 54294456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 47417854 - 47417810
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||    
T  47417854 gtggtgaccgaggtttgaactccgaaccttgcatatattatgcat 47417810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 9639807 - 9639851
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||| |||||||| |||||||||||||||||||||| ||||||    
T  9639807 gtggtgtccgaggttcgaactccggaccttgcatatattatgcat 9639851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 32950759 - 32950795
Alignment:
Q  175 cgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||||||||||||||||||||||||||| ||||||    
T  32950759 cgaggtttgaactccggaccttgcatatattatgcat 32950795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 34521180 - 34521224
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||| ||||||||||||| ||||||||||||||||| ||||||    
T  34521180 gtggtggccgaggtttgaaccccggaccttgcatatattatgcat 34521224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 34595943 - 34595899
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||| ||||||||||||| ||||||||||||||||| ||||||    
T  34595943 gtggtggccgaggtttgaaccccggaccttgcatatattatgcat 34595899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 211
Target Start/End: Complemental strand, 26755680 - 26755643
Alignment:
Q  174 ccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    ||||||||||||| ||||||||||||||||| ||||||    
T  26755680 ccgaggtttgaaccccggaccttgcatatataatgcat 26755643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 64676 - 64712
Alignment:
Q  175 cgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  64676 cgaggtttgaactccggactttgcatatattatgcat 64712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 21638184 - 21638140
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||| ||| |||| |||| ||||||||||||||||||||||||    
T  21638184 gtggtgtccggggttcgaaccccggaccttgcatatatcatgcat 21638140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 42045362 - 42045406
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||| ||| |||||||||||| |||||||||||||| ||||||    
T  42045362 gtggtggccggggtttgaactccagaccttgcatatattatgcat 42045406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 44794962 - 44794920
Alignment:
Q  169 ggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||| ||||||||||||||||||||||||||||||| ||||||    
T  44794962 ggtggccgaggtttgaactccggaccttgcatatattatgcat 44794920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 27587292 - 27587248
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||| ||| ||||||||| ||||||||||||||||||||||||    
T  27587292 gtggtggccggggtttgaaccccggaccttgcatatatcatgcat 27587248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 204
Target Start/End: Complemental strand, 6248369 - 6248335
Alignment:
Q  170 gtgaccgaggtttgaactccggaccttgcatatat 204  Q
    |||||||||||| ||||||||||||||||||||||    
T  6248369 gtgaccgaggttcgaactccggaccttgcatatat 6248335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 30176409 - 30176454
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcatg 212  Q
    |||||| ||| ||||||||| ||||||||||||||||| |||||||    
T  30176409 gtggtgtccggggtttgaaccccggaccttgcatatattatgcatg 30176454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 6447260 - 6447216
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||| | ||| ||||||||||||||||||||||||| ||||||    
T  6447260 gtggtggctgagatttgaactccggaccttgcatatattatgcat 6447216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 12748972 - 12748928
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||| ||| ||||||||| ||||||||||||||||| ||||||    
T  12748972 gtggtggccggggtttgaaccccggaccttgcatatattatgcat 12748928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 20665353 - 20665397
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||| ||| ||||||||||||||||||||||||| | ||||||    
T  20665353 gtggtggccggggtttgaactccggaccttgcatattttatgcat 20665397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 27718896 - 27718928
Alignment:
Q  179 gtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||||||||||||||||||||||| ||||||    
T  27718896 gtttgaactccggaccttgcatatattatgcat 27718928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 29652281 - 29652245
Alignment:
Q  175 cgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  29652281 cgaggtttgaactctggaccttgcatatattatgcat 29652245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 30550716 - 30550760
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||| ||| ||||||||||||||||||||||||| | ||||||    
T  30550716 gtggtggccggggtttgaactccggaccttgcatattttatgcat 30550760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 32051522 - 32051566
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||| ||| ||||||||| ||||||||||||||||| ||||||    
T  32051522 gtggtggccggggtttgaaccccggaccttgcatatattatgcat 32051566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 44215465 - 44215509
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||| ||| ||||||||||||||||||||||||| | ||||||    
T  44215465 gtggtggccggggtttgaactccggaccttgcatattttatgcat 44215509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 168 - 211
Target Start/End: Complemental strand, 33824951 - 33824908
Alignment:
Q  168 tggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    ||||| ||||||||||||| ||||||||||||||||| ||||||    
T  33824951 tggtggccgaggtttgaaccccggaccttgcatatattatgcat 33824908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 291437 - 291391
Alignment:
Q  168 tggtgaccgaggtttgaactccggaccttgcatatatcatgcatgat 214  Q
    ||||||| | ||||||||| ||||||||||||||||| |||||||||    
T  291437 tggtgacgggggtttgaaccccggaccttgcatatattatgcatgat 291391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 204
Target Start/End: Original strand, 8916464 - 8916501
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatat 204  Q
    |||||| ||||| |||||||||||||||||||||||||    
T  8916464 gtggtggccgagatttgaactccggaccttgcatatat 8916501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 204
Target Start/End: Complemental strand, 11982621 - 11982585
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatat 204  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  11982621 gtggtgaccgaggtt-gaactccggaccttgcatatat 11982585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 211
Target Start/End: Complemental strand, 13496176 - 13496143
Alignment:
Q  178 ggtttgaactccggaccttgcatatatcatgcat 211  Q
    ||||||||||||||||||||||||||| ||||||    
T  13496176 ggtttgaactccggaccttgcatatattatgcat 13496143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 247730 - 247686
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||| ||| ||||||||||||||||||||||||| | ||||||    
T  247730 gtggtggccggggtttgaactccggaccttgcatattttatgcat 247686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 2726407 - 2726451
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||||||| |||| |||| ||||||||||||||||| ||||||    
T  2726407 gtggtgaccggggttcgaaccccggaccttgcatatattatgcat 2726451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 4450333 - 4450289
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||||||||| || |||| ||||||||||||||||| ||||||    
T  4450333 gtggtgaccgagattcgaaccccggaccttgcatatattatgcat 4450289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 4467349 - 4467305
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||| ||||||||||| | || |||||||||||||||||||||    
T  4467349 gtggtggccgaggtttgagccccagaccttgcatatatcatgcat 4467305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 8569780 - 8569736
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||| ||| ||||||||| ||||||||||||||||| ||||||    
T  8569780 gtggtggccggggtttgaaccccggaccttgcatatattatgcat 8569736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 167 - 210
Target Start/End: Original strand, 20017046 - 20017089
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgca 210  Q
    |||||| ||||| ||||||||||||||||||||||||| |||||    
T  20017046 gtggtggccgagatttgaactccggaccttgcatatataatgca 20017089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 3708764 - 3708720
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||| ||| ||||||||||||||||||||||||| | ||||||    
T  3708764 gtggtggccggggtttgaactccggaccttgcatattttatgcat 3708720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 4056861 - 4056817
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||| ||||| || |||||||||||||||||||||| ||||||    
T  4056861 gtggtgcccgagattcgaactccggaccttgcatatattatgcat 4056817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 10735821 - 10735865
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||| ||| ||||||||| ||||||||||||||||| ||||||    
T  10735821 gtggtggccggggtttgaaccccggaccttgcatatattatgcat 10735865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 11868652 - 11868696
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||| ||| ||||||||||||||||||||||||| | ||||||    
T  11868652 gtggtggccggggtttgaactccggaccttgcatattttatgcat 11868696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 15447704 - 15447748
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||| ||| |||||||||||| |||||||||||||| ||||||    
T  15447704 gtggtggccggggtttgaactccagaccttgcatatattatgcat 15447748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 27848229 - 27848185
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||| ||| ||||||||| ||||||||||||||||| ||||||    
T  27848229 gtggtggccggggtttgaaccccggaccttgcatatattatgcat 27848185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 29544698 - 29544654
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||| ||| ||||||||| ||||||||||||||||| ||||||    
T  29544698 gtggtggccggggtttgaaccccggaccttgcatatattatgcat 29544654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 35360045 - 35360089
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||| ||| ||||||||||||||||||||||||| | ||||||    
T  35360045 gtggtggccggggtttgaactccggaccttgcatattttatgcat 35360089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 35820291 - 35820335
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||| ||||||||||||| ||||||||||||| ||| ||||||    
T  35820291 gtggtggccgaggtttgaaccccggaccttgcatgtattatgcat 35820335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 36359385 - 36359341
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||| || |||||||||| ||||||||||||||||| ||||||    
T  36359385 gtggtggccaaggtttgaaccccggaccttgcatatattatgcat 36359341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 7670497 - 7670461
Alignment:
Q  175 cgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||||||||| ||||||||||||||||| ||||||    
T  7670497 cgaggtttgaaccccggaccttgcatatattatgcat 7670461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 16198454 - 16198410
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||| ||||| || |||||||||||||||||||||| ||||||    
T  16198454 gtggtggccgagattcgaactccggaccttgcatatattatgcat 16198410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 16537526 - 16537570
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||||||||||||||||| || ||||||| |||||| ||||||    
T  16537526 gtggtgaccgaggtttgaaccccagaccttgtatatattatgcat 16537570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 16628136 - 16628092
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||||||||||||||||| || ||||||| |||||| ||||||    
T  16628136 gtggtgaccgaggtttgaaccccagaccttgtatatattatgcat 16628092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 20763225 - 20763181
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||| ||| ||||||||||||||||||||||||| | ||||||    
T  20763225 gtggtggccggggtttgaactccggaccttgcatattttatgcat 20763181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 27462426 - 27462470
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||| ||| ||||||||| ||||||||||||||||| ||||||    
T  27462426 gtggtggccggggtttgaaccccggaccttgcatatattatgcat 27462470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 29488791 - 29488747
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||| ||| ||||||||||||||||||||||||| | ||||||    
T  29488791 gtggtggccggggtttgaactccggaccttgcatattttatgcat 29488747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 33232387 - 33232431
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||| ||| ||||||||||||||||||||||||| | ||||||    
T  33232387 gtggtggccggggtttgaactccggaccttgcatattttatgcat 33232431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 34284529 - 34284573
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||| ||| ||||||||||||||||||||||||| | ||||||    
T  34284529 gtggtggccggggtttgaactccggaccttgcatattttatgcat 34284573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 37516800 - 37516836
Alignment:
Q  175 cgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||||||||||||||||||||||||| | ||||||    
T  37516800 cgaggtttgaactccggaccttgcatatgttatgcat 37516836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 42095942 - 42095978
Alignment:
Q  176 gaggtttgaactccggaccttgcatatatcatgcatg 212  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  42095942 gaggtttgaaccccggaccttgcatatattatgcatg 42095978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 47342436 - 47342468
Alignment:
Q  179 gtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||||||||||||||||||||||| ||||||    
T  47342436 gtttgaactccggaccttgcatatattatgcat 47342468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 20688099 - 20688067
Alignment:
Q  179 gtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||||||||||||||||||||||| ||||||    
T  20688099 gtttgaactccggaccttgcatatattatgcat 20688067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 22522791 - 22522835
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||| ||| ||||||||| ||||||||||||||||| ||||||    
T  22522791 gtggtggccggggtttgaaccccggaccttgcatatattatgcat 22522835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 37462182 - 37462138
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||| ||| ||||||||||||||||||||||||| | ||||||    
T  37462182 gtggtggccggggtttgaactccggaccttgcatattttatgcat 37462138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 40715939 - 40715983
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||| ||| ||||||||| ||||||||||||||||| ||||||    
T  40715939 gtggtggccggggtttgaaccccggaccttgcatatattatgcat 40715983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 913590 - 913634
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||| | ||||||||||| ||||||||||||||||| ||||||    
T  913590 gtggtggcagaggtttgaaccccggaccttgcatatattatgcat 913634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 916510 - 916466
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||| ||| ||||||||||||||||||||||||| | ||||||    
T  916510 gtggtggccggggtttgaactccggaccttgcatattttatgcat 916466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 10498685 - 10498729
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||| |||||||||||||||  |||||||||||||| ||||||    
T  10498685 gtggtggccgaggtttgaactcatgaccttgcatatattatgcat 10498729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 16792964 - 16793008
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||||||| ||||||||| | ||||||||||||||| ||||||    
T  16792964 gtggtgaccggggtttgaaccctggaccttgcatatattatgcat 16793008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 36623492 - 36623456
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatata 203  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  36623492 gtggtggccggggtttgaactccggaccttgcatata 36623456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 38130949 - 38130993
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||| ||| ||||||||| ||||||||||||||||| ||||||    
T  38130949 gtggtggccggggtttgaaccccggaccttgcatatattatgcat 38130993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 44075146 - 44075190
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||| ||| ||||||||||||||||||||||||| | ||||||    
T  44075146 gtggtggccggggtttgaactccggaccttgcatattttatgcat 44075190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 48849753 - 48849797
Alignment:
Q  167 gtggtgaccgaggtttgaactccggaccttgcatatatcatgcat 211  Q
    |||||| ||| ||||||||| ||||||||||||||||| ||||||    
T  48849753 gtggtggccggggtttgaaccccggaccttgcatatattatgcat 48849797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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