View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0616_high_23 (Length: 297)
Name: NF0616_high_23
Description: NF0616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0616_high_23 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 7739910 - 7739614
Alignment:
| Q |
1 |
actccacttgacactcctcttcctttcttccatctacttctccacatcaaatgctgatgatgttgagttctcctgcaacgccaatgacaaagccaccctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7739910 |
actccacttgacactcctcttcctttcttccatctacttctccacatcaaatgctgatgatgttgagttctcctgcaacgccaatgacaaagccaccctc |
7739811 |
T |
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| Q |
101 |
ctcaaaatcagagaccatttcggcggccccaacggccgcctttccgattgggacaacggtacagactgttgtagcgactggagcttcgtcgggtgtggca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
7739810 |
ctcaaaatcagagaccatttcggcggccccaacggccgcctttccgattgggacaacggtacagactgttgtagcgactggagcttcgtcgggtgtggta |
7739711 |
T |
|
| Q |
201 |
aacccctacctggccgaatcaccgttgtcacaatcagccgtggctggggtctttccggtatgctaccagcggactttggcgaccttccatatcttaa |
297 |
Q |
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||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
7739710 |
aacccctacctggccgaatcaccgtcgtcaccatcagccgtggctggggtctttccggtacgctaccagcggagtttggcgaccttccatatcttaa |
7739614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 7731752 - 7731456
Alignment:
| Q |
1 |
actccacttgacactcctcttcctttcttccatctacttctccacatcaaatgctgatgatgttgagttctcctgcaacgccaatgacaaagccaccctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7731752 |
actccacttgacactcctcttcctttcttccatctacttctccacatcaaatgctgatgatgttgagttctcctgcaacgccaatgacaaagccaccctc |
7731653 |
T |
|
| Q |
101 |
ctcaaaatcagagaccatttcggcggccccaacggccgcctttccgattgggacaacggtacagactgttgtagcgactggagcttcgtcgggtgtggca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
7731652 |
ctcaaaatcagagaccatttcggcggccccaacggccgcctttccgattgggacaacggtacagactgttgtagcgactggagcttcgtcgggtgtggta |
7731553 |
T |
|
| Q |
201 |
aacccctacctggccgaatcaccgttgtcacaatcagccgtggctggggtctttccggtatgctaccagcggactttggcgaccttccatatcttaa |
297 |
Q |
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||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||| |||| || ||||||||||| || |||||||| |
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| T |
7731552 |
aacccctacctggccgaatcaccgtcgtcaccatcagccgtggctggggtctttccggtacgcttccagtagagtttggcgacctcccttatcttaa |
7731456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 7727592 - 7727296
Alignment:
| Q |
1 |
actccacttgacactcctcttcctttcttccatctacttctccacatcaaatgctgatgatgttgagttctcctgcaacgccaatgacaaagccaccctc |
100 |
Q |
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||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
7727592 |
actccacttaacacttctcttcctttcttccatctacttctccacatcaaatgctgatgatgttgagttctcctgcaatgccaatgacaaagccactctc |
7727493 |
T |
|
| Q |
101 |
ctcaaaatcagagaccatttcggcggccccaacggccgcctttccgattgggacaacggtacagactgttgtagcgactggagcttcgtcgggtgtggca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
7727492 |
ctcaaaatcagagaccatttcggcggccccaacggccgcctctccgattgggacaacagtacagactgttgtagcgactggagcttcgtcgggtgtggca |
7727393 |
T |
|
| Q |
201 |
aacccctacctggccgaatcaccgttgtcacaatcagccgtggctggggtctttccggtatgctaccagcggactttggcgaccttccatatcttaa |
297 |
Q |
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||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||| ||| ||||| || ||||||||||| ||||||||||| |
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| T |
7727392 |
aacccctacctggccgaatcaccgtcgtcaccatcagccgtggctggggtctttctggtacgcttccagcagagtttggcgacctcccatatcttaa |
7727296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 7699724 - 7699435
Alignment:
| Q |
1 |
actccacttgacactcctcttcctttcttccatctacttctccacatcaaatgctgatgatgttgagttctcctgcaacgccaatgacaaagccaccctc |
100 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||||| |||||| || ||||| | |||| |||||||||| | ||||||||| ||||| |
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| T |
7699724 |
actccacttaacacttctcttcctttcttccatctacttctccaaatcaaacgcaagtgatg---acttcttctgcaacgccgacgacaaagccgccctc |
7699628 |
T |
|
| Q |
101 |
ctcaaaatcagagaccatttcggcggccccaacggccgcctttccgattgggacaacggtacagactgttgtagcgactggagcttcgtcgggtgtggca |
200 |
Q |
| |
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||||||||||||||||||||||| || ||||| |||||||| ||| ||||||||| || || |||||| ||||||||||||||||| || |||| |
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| T |
7699627 |
ctcaaaatcagagaccatttcggtggtcccaaaggccgcctcgacgactgggacaacaacaccgaatgttgt---gactggagcttcgtcggttgcggca |
7699531 |
T |
|
| Q |
201 |
aacccctacctggccgaatcaccgttgtcacaatcagccgtggctggggtctttccggtatgctaccagcggactttggcgaccttccatatctta |
296 |
Q |
| |
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||| ||||||||| ||||||| ||||| |||||||||||||||||||||||||||| ||| |||||||| |||||| |||| || ||||||| |
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| T |
7699530 |
gaccttatcctggccgagtcaccgtcgtcaccatcagccgtggctggggtctttccggtacgcttccagcggagtttggcaacctcccttatctta |
7699435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 11 - 296
Target Start/End: Complemental strand, 7714059 - 7713780
Alignment:
| Q |
11 |
acactcctcttcctttcttccatctacttctccacatcaaatgctgatgatgttgagttctcctgcaacgccaatgacaaagccaccctcctcaaaatca |
110 |
Q |
| |
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|||||| ||||||||||||||||||||||||||| |||||| || ||||| | |||| |||||||||| | ||||||||| ||||||||||||||| |
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| T |
7714059 |
acactcttcttcctttcttccatctacttctccaaatcaaacgcaagtgatg---acttcttctgcaacgccgacgacaaagccgccctcctcaaaatca |
7713963 |
T |
|
| Q |
111 |
gagaccatttcggcggccccaacggccgcctttccgattgggacaacggtacagactgttgtagcgactggagcttcgtcgggtgtggcaaacccctacc |
210 |
Q |
| |
|
|||||||||| |||||||| |||||||| ||| ||| ||||||||| || || |||||| ||||||| |||||| || || |||| ||| || |
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| T |
7713962 |
gagaccattttggcggccctaacggccgtcttgacgactgggacaacaacactgaatgttgt---gactggaacttcgtaggttgcggcagaccttatcc |
7713866 |
T |
|
| Q |
211 |
tggccgaatcaccgttgtcacaatcagccgtggctggggtctttccggtatgctaccagcggactttggcgaccttccatatctta |
296 |
Q |
| |
|
||||||| |||||| ||||| ||| |||||||||||||||||||||||| || |||||||| ||||||||||| || ||||||| |
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| T |
7713865 |
tggccgagtcaccggcgtcaccatcggccgtggctggggtctttccggtacacttccagcggagtttggcgacctcccttatctta |
7713780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 173
Target Start/End: Original strand, 12907799 - 12907901
Alignment:
| Q |
71 |
tcctgcaacgccaatgacaaagccaccctcctcaaaatcagagaccatttcggcggccccaacggccgcctttccgattgggacaacggtacagactgtt |
170 |
Q |
| |
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|||||| || ||||||| ||||| | ||||||||||| |||||||||||||||||||| ||||| | ||| ||||| ||| ||| | | ||||||||| |
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| T |
12907799 |
tcctgccaccccaatgataaagctgctctcctcaaaataagagaccatttcggcggccctaacggacccctatccgactggcacaccaatgcagactgtt |
12907898 |
T |
|
| Q |
171 |
gta |
173 |
Q |
| |
|
||| |
|
|
| T |
12907899 |
gta |
12907901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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