View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0616_high_27 (Length: 267)

Name: NF0616_high_27
Description: NF0616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0616_high_27
NF0616_high_27
[»] chr6 (8 HSPs)
chr6 (24-233)||(2450142-2450351)
chr6 (24-225)||(2591372-2591575)
chr6 (24-225)||(2569695-2569896)
chr6 (24-225)||(2673070-2673271)
chr6 (24-225)||(2622918-2623119)
chr6 (27-218)||(2439432-2439623)
chr6 (24-225)||(2641910-2642111)
chr6 (24-225)||(2597251-2597452)
[»] chr3 (1 HSPs)
chr3 (171-225)||(53393427-53393481)


Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 24 - 233
Target Start/End: Complemental strand, 2450351 - 2450142
Alignment:
Q  24 tgagatgaaaaagtagttatggttctaatattcgaaacagcttcaactgctattttgctacttttatcttgggcttcaattgcttttcttgacattctct 123  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2450351 tgagatgaaaaagcagttatggttctaatattcgaaacagcttcaactgctattttgctacttttatcttgggcttcaattgcttttcttgacattctct 2450252  T
Q  124 taagaagggaactccttgtgtagaaacaaaccatgtgaattggttgaactgctatcataacaattgatagtctccatgtaatgattagtcccattatgaa 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2450251 taagaagggaactccttgtgtagaaacaaaccatgtgaattggttgaactgctatcataacaattgatagtctccatgtaatgattagtcccattatgaa 2450152  T
Q  224 tgttgttacc 233  Q
    ||||||||||    
T  2450151 tgttgttacc 2450142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 24 - 225
Target Start/End: Complemental strand, 2591575 - 2591372
Alignment:
Q  24 tgagatgaaaaagtagttatggttctaatattcgaaacagcttcaactgctattttgctacttttatcttgggcttcaattgcttttcttgacattctct 123  Q
    ||||||||||||| | | |||||||| | ||| |||||||||||| | ||||||||||||| || ||||||||| |  || ||||||||||||||  ||     
T  2591575 tgagatgaaaaagcattgatggttcttagatttgaaacagcttcagcagctattttgctacattcatcttgggccttgatggcttttcttgacatgttcc 2591476  T
Q  124 taagaagggaactccttgtgtagaaacaaaccatgtgaattggttgaactgctatcataacaattgatagtctccatgtaatg--attagtcccattatg 221  Q
    ||||||||  || |||||| |||||||||   |||  || |||||||||||||||||||||||| | ||||||||||| ||||  |||||||||||| ||    
T  2591475 taagaaggacacaccttgtatagaaacaacatatgataactggttgaactgctatcataacaatggctagtctccatgcaatgatattagtcccattgtg 2591376  T
Q  222 aatg 225  Q
    ||||    
T  2591375 aatg 2591372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 24 - 225
Target Start/End: Original strand, 2569695 - 2569896
Alignment:
Q  24 tgagatgaaaaagtagttatggttctaatattcgaaacagcttcaactgctattttgctacttttatcttgggcttcaattgcttttcttgacattctct 123  Q
    ||||||||||||| | | |||||||| | ||| |||||||||||| | |||||||||||||  | |||||| || |  || ||||| ||||||||  |||    
T  2569695 tgagatgaaaaagcattgatggttcttagatttgaaacagcttcagcagctattttgctacactgatcttgagccttgatggctttgcttgacatgttct 2569794  T
Q  124 taagaagggaactccttgtgtagaaacaaaccatgtgaattggttgaactgctatcataacaattgatagtctccatgtaatgattagtcccattatgaa 223  Q
    ||||||||  || ||||||||||||||||   |||  || |||||||||||||||||||||||| | |||| |||||| ||||||||| |||||| ||||    
T  2569795 taagaaggacacgccttgtgtagaaacaataaatgataagtggttgaactgctatcataacaatggctagtttccatgcaatgattaggcccattgtgaa 2569894  T
Q  224 tg 225  Q
    ||    
T  2569895 tg 2569896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 24 - 225
Target Start/End: Original strand, 2673070 - 2673271
Alignment:
Q  24 tgagatgaaaaagtagttatggttctaatattcgaaacagcttcaactgctattttgctacttttatcttgggcttcaattgcttttcttgacattctct 123  Q
    ||||||||||||| | | |||||||| | ||| ||||| |||||| | ||||||||||||| || ||||||||| |  || ||||| ||||||||  |||    
T  2673070 tgagatgaaaaagcattgatggttcttagatttgaaactgcttcagcagctattttgctacattcatcttgggccttgatggctttgcttgacatgttct 2673169  T
Q  124 taagaagggaactccttgtgtagaaacaaaccatgtgaattggttgaactgctatcataacaattgatagtctccatgtaatgattagtcccattatgaa 223  Q
    ||||||||  ||  ||||| |||||||||   |||  || |||||||||||||||||||||||| |  |||||||||| |||||||||||||||| ||||    
T  2673170 taagaaggacacgtcttgtatagaaacaacatatgataactggttgaactgctatcataacaatggcgagtctccatgcaatgattagtcccattgtgaa 2673269  T
Q  224 tg 225  Q
    ||    
T  2673270 tg 2673271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 24 - 225
Target Start/End: Complemental strand, 2623119 - 2622918
Alignment:
Q  24 tgagatgaaaaagtagttatggttctaatattcgaaacagcttcaactgctattttgctacttttatcttgggcttcaattgcttttcttgacattctct 123  Q
    ||||||||||||| | | |||||||| | ||| |||||||||||| | ||||||||||||| || ||||||||| |  |  |||||  |||||||  |||    
T  2623119 tgagatgaaaaagcattgatggttcttagatttgaaacagcttcagcagctattttgctacattcatcttgggccttgacggctttgtttgacatattct 2623020  T
Q  124 taagaagggaactccttgtgtagaaacaaaccatgtgaattggttgaactgctatcataacaattgatagtctccatgtaatgattagtcccattatgaa 223  Q
    ||||||||  |  ||||||||||||||||   |||  ||||||||||||||||||||||||||| | || |||||||| ||| | |||||||||| ||||    
T  2623019 taagaaggacaaaccttgtgtagaaacaatatatgataattggttgaactgctatcataacaatggctaatctccatgcaataagtagtcccattgtgaa 2622920  T
Q  224 tg 225  Q
    ||    
T  2622919 tg 2622918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 218
Target Start/End: Complemental strand, 2439623 - 2439432
Alignment:
Q  27 gatgaaaaagtagttatggttctaatattcgaaacagcttcaactgctattttgctacttttatcttgggcttcaattgcttttcttgacattctcttaa 126  Q
    ||||||||||  || ||| |||| | ||| |||||||||||| | |||||||||||||| | |||||| || | ||| ||||| ||||||||  | ||||    
T  2439623 gatgaaaaagatgtgatgattcttagatttgaaacagcttcagcagctattttgctactgtcatcttgagccttaatggctttacttgacatgttattaa 2439524  T
Q  127 gaagggaactccttgtgtagaaacaaaccatgtgaattggttgaactgctatcataacaattgatagtctccatgtaatgattagtcccatt 218  Q
    ||||   ||  ||||||||| ||||||  |||  |||||||||||||| |||||||||||| ||||||||||||||||| ||||| ||||||    
T  2439523 gaagaacacgtcttgtgtagtaacaaaaaatggtaattggttgaactgatatcataacaatggatagtctccatgtaataattagacccatt 2439432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 24 - 225
Target Start/End: Original strand, 2641910 - 2642111
Alignment:
Q  24 tgagatgaaaaagtagttatggttctaatattcgaaacagcttcaactgctattttgctacttttatcttgggcttcaattgcttttcttgacattctct 123  Q
    |||||||||||| || | |||||||||| ||| | ||||||||||   |||||||| |||| || ||||||||| |  || ||||| ||||||||  |||    
T  2641910 tgagatgaaaaactattgatggttctaagatttgtaacagcttcagaagctattttactacattcatcttgggccttgatggctttgcttgacatattct 2642009  T
Q  124 taagaagggaactccttgtgtagaaacaaaccatgtgaattggttgaactgctatcataacaattgatagtctccatgtaatgattagtcccattatgaa 223  Q
    | ||||||  || ||||||||||||||||   |||  ||  ||||||||||||||||||||||| | |||||||||||  |||||||  |||||| ||||    
T  2642010 tgagaaggacacgccttgtgtagaaacaacatatgataaggggttgaactgctatcataacaatggctagtctccatgcgatgattaaacccattgtgaa 2642109  T
Q  224 tg 225  Q
    ||    
T  2642110 tg 2642111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 225
Target Start/End: Original strand, 2597251 - 2597452
Alignment:
Q  24 tgagatgaaaaagtagttatggttctaatattcgaaacagcttcaactgctattttgctacttttatcttgggcttcaattgcttttcttgacattctct 123  Q
    ||||||||||||| | | |||||||| | ||| |||||||||||| | |||||||||||||  | |||||| || |  || ||||| ||| ||||  |||    
T  2597251 tgagatgaaaaagcattgatggttcttagatttgaaacagcttcagcagctattttgctacactcatcttgagccttgatggctttgcttaacatgttct 2597350  T
Q  124 taagaagggaactccttgtgtagaaacaaaccatgtgaattggttgaactgctatcataacaattgatagtctccatgtaatgattagtcccattatgaa 223  Q
    ||||||||  || |||||| |||||||||   ||   || |||||| ||| ||||||||||||| | ||||||||||| ||||||||| |||||| ||||    
T  2597351 taagaaggacacgccttgtatagaaacaacatataataactggttgcactactatcataacaatggttagtctccatgcaatgattaggcccattgtgaa 2597450  T
Q  224 tg 225  Q
    ||    
T  2597451 tg 2597452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 53393481 - 53393427
Alignment:
Q  171 actgctatcataacaattgatagtctccatgtaatgattagtcccattatgaatg 225  Q
    ||||||||||||||||| | ||||||||||| ||||||||  |||||| ||||||    
T  53393481 actgctatcataacaatggctagtctccatgcaatgattaaacccattgtgaatg 53393427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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