View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0616_high_34 (Length: 250)
Name: NF0616_high_34
Description: NF0616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0616_high_34 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 29 - 250
Target Start/End: Complemental strand, 42212664 - 42212443
Alignment:
| Q |
29 |
atgcaagccatgttagctgagtttcaaacaattaatttacaaagttttaaaattaaaactgatatacagcattccatcaagatatatatgttatttatag |
128 |
Q |
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| T |
42212664 |
atgcaagccatgttagctgagtttcaaacaattaatttacaaagttttaaaattaaaactgatatacagcattccatcaagatatatatgttatttatag |
42212565 |
T |
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| Q |
129 |
ttttatcatcaatcaaccgaaacgagtaagtgaatcaattaatgggctttgttctttcattttaatggattccttcctgcttgtatatggtcagtttctt |
228 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42212564 |
ttttatcatcaatcaactgaaacgagtaagtgaatcaattaatgggctttgttctttcattttaatggattccttcctgcttgtatatggtcagtttctt |
42212465 |
T |
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| Q |
229 |
ttgaagtccattactggttgca |
250 |
Q |
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|||||||||||||||||||||| |
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| T |
42212464 |
ttgaagtccattactggttgca |
42212443 |
T |
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