View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0616_high_5 (Length: 652)
Name: NF0616_high_5
Description: NF0616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0616_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 96 - 304
Target Start/End: Original strand, 4175257 - 4175465
Alignment:
| Q |
96 |
gtatccccatttggacttggttcaatcttgaccaaccgtgaagaatattgaatggtatccgtaggcagttgtccagccaaggtttccaaaagtaccctcc |
195 |
Q |
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| T |
4175257 |
gtatccccatttggacttggttcaatcttgaccaaccgtgaagaatattgaatggtatccgtaggcagttgtccagccaaggtttccaaaagtaccctcc |
4175356 |
T |
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| Q |
196 |
tctccactgcacgcaactcttggctgcacaatagcccatacatttcataaatatttattgtaacaatgacaaaaaccaataatgataaatatctaaaata |
295 |
Q |
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| T |
4175357 |
tctccactgcacgcaactcttggctgcacaatagcccatacatttcataaatatttgttgtaacaatgacaaaaaccaataatgataaatatctaaaata |
4175456 |
T |
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| Q |
296 |
agatactac |
304 |
Q |
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||||||||| |
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| T |
4175457 |
agatactac |
4175465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 96 - 250
Target Start/End: Original strand, 4171267 - 4171423
Alignment:
| Q |
96 |
gtatccccatttggacttggttcaatcttgaccaaccgtgaagaatattgaatggtatccgtaggcagttgtccagccaaggtttccaaaagtaccctcc |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||| | || ||||||| |||||||||||||| |||| |
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| T |
4171267 |
gtatccccatttggacttggttcaatcttgaccaaccgtgaagaatattgaatgctatcaggaggtaactgagcagccaaagtttccaaaagtactctcc |
4171366 |
T |
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| Q |
196 |
tctccactgcacgcaactcttggctgcacaatagccc--atacatttcataaatatt |
250 |
Q |
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| T |
4171367 |
tctccactgcacgcacctcttggctgcacaataccccttatgcatttcataaatatt |
4171423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 322 - 414
Target Start/End: Original strand, 4175751 - 4175843
Alignment:
| Q |
322 |
ttctatgaaattcataagcaatgtatgttgttagggactattctattgttagaaagagagtgccgataacattcttcttggtctcaattccta |
414 |
Q |
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| T |
4175751 |
ttctttgaaattcataagcaatgtatgttgttagggactattctattgttagaaagagagtgtcgataacactcttcttagtctcaattccta |
4175843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 415 - 459
Target Start/End: Original strand, 40948354 - 40948398
Alignment:
| Q |
415 |
gggaatggattgtctcctgtataaatgcctccagttttctcctgt |
459 |
Q |
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| T |
40948354 |
gggaatggattttctccggtgtaaatgcctccagttttctcctgt |
40948398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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