View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0616_high_6 (Length: 584)
Name: NF0616_high_6
Description: NF0616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0616_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 541; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 1 - 569
Target Start/End: Original strand, 50279014 - 50279582
Alignment:
| Q |
1 |
aaaacaagacgagtagttcagttaagcattgcgctgtgctgtcatgcatctcacctttgtttctcggtttagtcgtaaacaatgagaggaaaaagcaatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
50279014 |
aaaacaagacgagtagttcagttaagcattgcactgtgctgtcatgcatctcacctttgtttctctgtttagtcgtaaccaatgagaggaaaaagcaatc |
50279113 |
T |
|
| Q |
101 |
caatgttgagcagatacattaacattatctggtatagattaggagctactatcttctttcttttttctgaacaaaaacgagatcaaactattattaagca |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50279114 |
ctatgttgagcagatacattaacattatctggtatagattaggagctactatcttctttcttttttctgaacaaaaacgagatcaaactattattaagca |
50279213 |
T |
|
| Q |
201 |
tcaaaaccagccaatctgtccggttaccgtttctacctatgaatacaatattagtgttttcttgcctatctaactaacatttgagagcaagtacgagcta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50279214 |
tcaaaaccagccaatctgtccggttaccgtttctacctatgaatacaatattagtgttttcttgcctatctaactaacatttgagagcaagtacgagcta |
50279313 |
T |
|
| Q |
301 |
gcaagcgtgaaaatttctgagaaacaattgctttcaccaacaattctgagtcaatttctgataccaccttgcccagattcatcatttctgcattagtaat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
50279314 |
gcaagcgtgaaaatttctgagaaacaattgctttcaccaacacttctgagtcaatttctgataccaccttgcccagattcatgatttctgcattagtaat |
50279413 |
T |
|
| Q |
401 |
agcttgataaagacccattgtctcagctgtgatgtcatctgagaagggtaagctatgtgaattcagctgtgctatctatgcacgtggttgaatgttttgg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50279414 |
agcttgataaagacccattgtctcagctgtgatgtcatctgagaagggtaagctatgtgaattcagctgtgctatctatgcacgtggttgaatgttttgg |
50279513 |
T |
|
| Q |
501 |
tgccccagcctaatcttcaatgaaataaagctaaaacagaaagtcattagcagataaacacgcctccag |
569 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
50279514 |
tgccccagcctaatcttcaatgaaataaagctaaaacagaaagtcattagcagataaacacacctccag |
50279582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 334 times since January 2019
Visitors: 3833