View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0616_high_9 (Length: 457)
Name: NF0616_high_9
Description: NF0616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0616_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Complemental strand, 34567533 - 34567089
Alignment:
| Q |
1 |
tacaatatattctataatatatttgcttaaatgcattttcggtcgtctatttttactgattcatgattttatttcgtgtatttctaaattcgaaaatatg |
100 |
Q |
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| T |
34567533 |
tacaatatattctataatatttttgcttaaatgcattttcggccgtctatttttactaattcatgattttatttcgtgtatttctaaattcgaaaatatg |
34567434 |
T |
|
| Q |
101 |
gtctccatttttccaaatttagtgag-actaaaattgtgaatcttttnnnnnnnnngatgaaacgagtaagcatctaagcataaaattcgcgcgacaata |
199 |
Q |
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| T |
34567433 |
gtctccatttttccaaatttagtgaggactaaaattgtgaatcttttaaaaaaaa-gatgaaacgagtaatcatctaagcataaaattcgcgcgacaata |
34567335 |
T |
|
| Q |
200 |
ttagtacaataattggaaaattaaactaatgtatatattttttgattttgcagatttgatagagatttgagatggagaactggtgtaaacatagttccaa |
299 |
Q |
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| T |
34567334 |
ttagtacaataattggaaaattaaactaatgtatatattttttgattttgcagatttgatagagatttgagatggagaactggtgtaaacataattccaa |
34567235 |
T |
|
| Q |
300 |
tccattgtgatagttcaaacaattttcaaatcacacttgaagcattagaaactgcatacaaaaatgcagaatccatgaacatgaaagtaaaagcagtact |
399 |
Q |
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| T |
34567234 |
tccattgtgatagctcaaacaattttcaaatcacacttgaagcattagaaactgcatacaaaaatgcagaatccatgaacatgaaagtaaaagcagtact |
34567135 |
T |
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| Q |
400 |
tataaccaacccatcaaatccattaggcatatcgattcaacgttca |
445 |
Q |
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| T |
34567134 |
tataaccaacccatcaaatccattaggcatatcgattcaacgttca |
34567089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 245 - 387
Target Start/End: Complemental strand, 42789616 - 42789474
Alignment:
| Q |
245 |
ttttgcagatttgatagagatttgagatggagaactggtgtaaacatagttccaatccattgtgatagttcaaacaattttcaaatcacacttgaagcat |
344 |
Q |
| |
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||||| || ||||||||||| || || ||||||||||||||||||||||| ||||| || || | || ||||||||||||||||| |||| |||| | |
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| T |
42789616 |
ttttgtaggtttgatagagacttaaggtggagaactggtgtaaacatagtgccaattcactgcaacagatcaaacaattttcaaattacaccaaaagctt |
42789517 |
T |
|
| Q |
345 |
tagaaactgcatacaaaaatgcagaatccatgaacatgaaagt |
387 |
Q |
| |
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| T |
42789516 |
tagaagcagcttacaaagaagcagaatcaatgaacatgaaagt |
42789474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 245 - 387
Target Start/End: Complemental strand, 42799155 - 42799012
Alignment:
| Q |
245 |
ttttgcagatttgatagagatttgagatggagaactggtgtaaacatagttccaatccattgtgatagttcaaacaattttcaaatcaca-cttgaagca |
343 |
Q |
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||||| || ||||||||||| || || ||||||||||||||||||||||| ||||| || || | || ||||||||||||||||| ||| | |||| |
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| T |
42799155 |
ttttgtaggtttgatagagacttaaggtggagaactggtgtaaacatagtgccaattcactgcaacagatcaaacaattttcaaattacaccaaaaagct |
42799056 |
T |
|
| Q |
344 |
ttagaaactgcatacaaaaatgcagaatccatgaacatgaaagt |
387 |
Q |
| |
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| T |
42799055 |
ttagaagcagcttacaaagaagcagaatcaatgaacatgaaagt |
42799012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 297 - 370
Target Start/End: Original strand, 1462267 - 1462339
Alignment:
| Q |
297 |
caatccattgtgatagttcaaacaattttcaaatcacacttgaagcattagaaactgcatacaaaaatgcagaa |
370 |
Q |
| |
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||||||| ||||| || |||||||||||||||||||||||| |||||||| ||| || |||||||||||||||| |
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| T |
1462267 |
caatccagtgtgacagctcaaacaattttcaaatcacactt-aagcattaaaaattgtatacaaaaatgcagaa |
1462339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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