View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0616_low_1 (Length: 1069)

Name: NF0616_low_1
Description: NF0616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0616_low_1
NF0616_low_1
[»] chr4 (12 HSPs)
chr4 (776-997)||(4337092-4337313)
chr4 (438-722)||(4337367-4337650)
chr4 (776-997)||(4319177-4319407)
chr4 (198-444)||(4132165-4132404)
chr4 (789-995)||(4122538-4122747)
chr4 (890-997)||(4132616-4132720)
chr4 (180-354)||(4318852-4319027)
chr4 (93-171)||(4132017-4132095)
chr4 (777-997)||(4346553-4346779)
chr4 (783-840)||(4132515-4132572)
chr4 (89-174)||(4318713-4318798)
chr4 (890-997)||(4362742-4362849)
[»] chr6 (7 HSPs)
chr6 (890-1003)||(5065447-5065560)
chr6 (895-975)||(5253745-5253825)
chr6 (890-996)||(5177930-5178036)
chr6 (890-996)||(5279755-5279861)
chr6 (890-995)||(5126627-5126732)
chr6 (890-996)||(5346220-5346326)
chr6 (890-996)||(5688901-5689007)
[»] chr7 (1 HSPs)
chr7 (890-1003)||(36212919-36213032)


Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-121; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-121
Query Start/End: Original strand, 776 - 997
Target Start/End: Complemental strand, 4337313 - 4337092
Alignment:
Q  776 aaatcatctgcaggctctacttgaagagagatcctcttggcagcacattcatttttatcaccactctcaacgagaacattctcatctggtgcatgacatt 875  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4337313 aaatcatctgcaggctctacttgaagagagatcctcttggcagcacattcatttttatcaccactctcaacgagaacattctcatctggtgcatgacatt 4337214  T
Q  876 gctcaaatttttcgtcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttc 975  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4337213 gctcaaatttttcgtcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttc 4337114  T
Q  976 catatttgataccactctctgc 997  Q
    ||||||||||||||||||||||    
T  4337113 catatttgataccactctctgc 4337092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 438 - 722
Target Start/End: Complemental strand, 4337650 - 4337367
Alignment:
Q  438 cagaacagttcgtgcttactcaaattaaaacccccaggagttggctttgtggtctgaagacttgggatctaggagcgtgctcttctctaggtatcgaatt 537  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4337650 cagaacaattcgtgcttactcaaattaaaacccctaggagttggctttgtggtgtgaagacttgggatctaggagcgtgctcttctctaggtatcgaatt 4337551  T
Q  538 tgaattccccaagtaccaaaaattcttgtgttgggcccaatggagatacaaagctttgttcttgtagcaattggg-gcccccgctagtggttagtgggat 636  Q
    |||||||||||||||||||||||||||||||||||||        ||||||||||||||||| ||||||||||||  |||||||||||||||||||||||    
T  4337550 tgaattccccaagtaccaaaaattcttgtgttgggcc---gctccatacaaagctttgttctggtagcaattgggcccccccgctagtggttagtgggat 4337454  T
Q  637 ttat-cccccggattagttggtccttaggccggatatggagttttcaagagnnnnnnntcagctcaaattaaaatttacctggcaag 722  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  4337453 ttatccccccggattagttggtccttaggccggatatggagttttcaagagaaaaaaatcagctcaaattaaaatttacctggcaag 4337367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 776 - 997
Target Start/End: Original strand, 4319177 - 4319407
Alignment:
Q  776 aaatcatctgcaggctctacttgaagagagatcctcttggcagcacattcatttttatcaccactctcaacgagaacattctcatctggtgcatgacatt 875  Q
    |||||||||| ||||||||||||  ||||||||||| |||||||||||||||||| ||||||  | ||||| |||||||||| |||||||| ||||||||    
T  4319177 aaatcatctgtaggctctacttggcgagagatcctcatggcagcacattcattttcatcaccgatatcaacaagaacattcttatctggtgtatgacatt 4319276  T
Q  876 gctcaaatttttcg---------tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatc 966  Q
    |||| ||| |||||         |||| ||||||||||||||||| |||| ||||||||||  |||||||||||||||| ||||||||||| || || ||    
T  4319277 gctccaatatttcgacgactggttcatcatatatgagataaactgctgtcttcatcacaatgaaactgttcccaaaaacgacaacaatctccaccttgtc 4319376  T
Q  967 accaggttccatatttgataccactctctgc 997  Q
    ||||||||||||||||| ||| |||||||||    
T  4319377 accaggttccatatttgttacaactctctgc 4319407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 198 - 444
Target Start/End: Original strand, 4132165 - 4132404
Alignment:
Q  198 ataaaacctgcaatccactgtcagaaactaaaattcaacaatctgccacaactaacagcaccaatacaaggtttatgggcaccatgacaatgaaatgcat 297  Q
    |||||||||||||| ||| ||| ||| ||| || ||| ||||| |||||||||| |||||||  |||||||| ||| |||||||| | ||| |||| |||    
T  4132165 ataaaacctgcaattcacagtcggaagctataaatcatcaatcagccacaactagcagcaccgctacaaggtctataggcaccataagaatcaaattcat 4132264  T
Q  298 aaacccccaaaa-gatctttgaaattgtagaaataaggaaaattcagagaagctctctttgaaatgatagaatgtcagtcattttagtccagaaagttat 396  Q
    ||| |||||||| ||||||| |||||| |||||||||||||||||| ||||||||||         ||||| |||| |||||||||||||| |||| |||    
T  4132265 aaatccccaaaatgatctttaaaattgaagaaataaggaaaattcacagaagctctc--------aatagattgtctgtcattttagtccacaaagctat 4132356  T
Q  397 ccttcgaatttctcttatttcaggggattaacctaacagcgcagaaca 444  Q
    |||| |||||||||||||||| || || ||| ||||||||||||||||    
T  4132357 cctttgaatttctcttatttctggagactaagctaacagcgcagaaca 4132404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 789 - 995
Target Start/End: Original strand, 4122538 - 4122747
Alignment:
Q  789 gctctacttgaagagagatcctcttggcagcacattcatttttatcaccactctcaacgagaacattctcatctggtgcatgacattgctcaaatttttc 888  Q
    |||||||||| ||||||| |||||||||||| |||||||||| | ||||||   ||||   |||||||| || ||||||||| |||||||| | ||||||    
T  4122538 gctctacttgcagagagaccctcttggcagcgcattcattttcagcaccac---caac---aacattcttatttggtgcatggcattgctctattttttc 4122631  T
Q  889 g---------tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccata 979  Q
              |||| ||||||||||||||||| |||| ||||||||||  ||||||| |||||||||||||||||||| ||||| |||||||||||||||    
T  4122632 accgattggttcatcatatatgagataaactgatgtcttcatcacaatgaaactgtttccaaaaacaacaacaatctccactttgtcaccaggttccata 4122731  T
Q  980 tttgataccactctct 995  Q
    ||||||||||||||||    
T  4122732 tttgataccactctct 4122747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 890 - 997
Target Start/End: Original strand, 4132616 - 4132720
Alignment:
Q  890 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 989  Q
    |||| ||||||||||||||||| |||| ||||||||||  |||||||||||||||||   |||||||||||||| ||||||||||||||||||||||| |    
T  4132616 tcatcatatatgagataaactgctgtcttcatcacaatgaaactgttcccaaaaaca---acaatctcgactttgtcaccaggttccatatttgatacta 4132712  T
Q  990 ctctctgc 997  Q
    ||||||||    
T  4132713 ctctctgc 4132720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 180 - 354
Target Start/End: Original strand, 4318852 - 4319027
Alignment:
Q  180 gtagccacgaatctacacataaaacctgcaatccactgtcagaaactaaaattcaacaatctgccacaactaacagcaccaatacaaggtttatgggcac 279  Q
    |||||||| ||| ||  ||||||| |||||||||||| ||| |||||| |||||| ||||| |||||||||| || |||| ||||||||||||  |  ||    
T  4318852 gtagccaccaatgtaagcataaaatctgcaatccactttcataaactataattcaccaatcagccacaactagcaacacctatacaaggtttacagagac 4318951  T
Q  280 catgacaatgaaatgcataaacccccaaaa-gatctttgaaattgtagaaataaggaaaattcagagaagctctct 354  Q
     |||| ||| ||| ||| |||||||||||| |||||||||||||   |||||| |||||||||| |||||||||||    
T  4318952 aatgagaattaaaggcacaaacccccaaaatgatctttgaaattaatgaaatatggaaaattcacagaagctctct 4319027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 93 - 171
Target Start/End: Original strand, 4132017 - 4132095
Alignment:
Q  93 gtttccttatcttactccccttaaagcattaggatcagggcttcccaatctagttcaagctggacttctatgaaaccaa 171  Q
    |||||||||||||| ||||| || |||||||||||||||||||||||||| || ||| | ||||||||| |||||||||    
T  4132017 gtttccttatcttattccccgtagagcattaggatcagggcttcccaatcaagctcatgttggacttctgtgaaaccaa 4132095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 777 - 997
Target Start/End: Complemental strand, 4346779 - 4346553
Alignment:
Q  777 aatcatctgcaggctctacttgaagagagatcctcttggcagcacattcatttttatcaccactctcaacgagaacattctcatctggtgcatgacattg 876  Q
    |||||||||  | |||||||||| |||| |||||||||| ||  |||||||||| ||||||||   |||| | |||||||  ||||||||||| ||| ||    
T  4346779 aatcatctgtggactctacttgaggagaaatcctcttggaagagcattcattttcatcaccac---caacaataacattcatatctggtgcatcacaatg 4346683  T
Q  877 ctcaaatttttcgtca---------tgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatca 967  Q
     || | ||||||||||         | ||||||||||||||||| |||| || |||||||   | ||||| | | ||||||||| ||||| ||||| |||    
T  4346682 gtctattttttcgtcaattggttcatcatatatgagataaactgctgtcttcgtcacaatgacattgttcaccataacaacaactatctccactttgtca 4346583  T
Q  968 ccaggttccatatttgataccactctctgc 997  Q
    |||||||||||||| |||| || |||||||    
T  4346582 ccaggttccatattcgatatcattctctgc 4346553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 783 - 840
Target Start/End: Original strand, 4132515 - 4132572
Alignment:
Q  783 ctgcaggctctacttgaagagagatcctcttggcagcacattcatttttatcaccact 840  Q
    |||| |||||||||||||||| || ||||||||||||||||||||||| |||||||||    
T  4132515 ctgcgggctctacttgaagagtgaacctcttggcagcacattcattttcatcaccact 4132572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 174
Target Start/End: Original strand, 4318713 - 4318798
Alignment:
Q  89 atcagtttccttatcttactccccttaaagcattaggatcagggcttcccaatctagttcaagctggacttctatgaaaccaagat 174  Q
    ||||||||||||||||||||||| |||||||||||||||| | |||| ||| || |  ||||| |||| |||| ||||||||||||    
T  4318713 atcagtttccttatcttactcccattaaagcattaggatccgagcttaccagtcaaactcaagttggatttctgtgaaaccaagat 4318798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 890 - 997
Target Start/End: Complemental strand, 4362849 - 4362742
Alignment:
Q  890 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 989  Q
    |||| ||||||||||||||||| |||| || |||||||   | ||||| | |  |||| ||| ||||| ||||| |||||||||||||||||||||| ||    
T  4362849 tcatcatatatgagataaactgctgtcttcgtcacaatgacattgttcaccattacaataactatctccactttgtcaccaggttccatatttgatatca 4362750  T
Q  990 ctctctgc 997  Q
    ||||||||    
T  4362749 ctctctgc 4362742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 4e-19; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 890 - 1003
Target Start/End: Original strand, 5065447 - 5065560
Alignment:
Q  890 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 989  Q
    |||| ||||||||||||||||||||||||| ||||||   ||| |||| |||||||||||||||  || |||||||  |||||||| ||| ||||||| |    
T  5065447 tcatcatatatgagataaactgttgtcctcttcacaacgaaaccgttctcaaaaacaacaacaaaatccactttatttccaggttcaatacttgatacta 5065546  T
Q  990 ctctctgctcctcc 1003  Q
    |||||||| |||||    
T  5065547 ctctctgcccctcc 5065560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 895 - 975
Target Start/End: Complemental strand, 5253825 - 5253745
Alignment:
Q  895 atatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttc 975  Q
    |||||||||||||||||| |||||| |||||||  |||||||| ||||||||||||||| ||| |||||||  ||||||||    
T  5253825 atatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacaacaacaaactccactttatttccaggttc 5253745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 890 - 996
Target Start/End: Complemental strand, 5178036 - 5177930
Alignment:
Q  890 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 989  Q
    |||| ||||| |||||||||||||||  || |||||||  ||| |||| ||||||||||||||| ||| ||||| | || |||||| ||| ||||||| |    
T  5178036 tcatcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatacttgatacta 5177937  T
Q  990 ctctctg 996  Q
    |||||||    
T  5177936 ctctctg 5177930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 890 - 996
Target Start/End: Complemental strand, 5279861 - 5279755
Alignment:
Q  890 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 989  Q
    |||| ||||| |||||||||||||||  || |||||||  ||| |||| ||||||||||||||| ||| ||||| | || |||||| ||| ||||||| |    
T  5279861 tcatcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatacttgatacta 5279762  T
Q  990 ctctctg 996  Q
    |||||||    
T  5279761 ctctctg 5279755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 890 - 995
Target Start/End: Original strand, 5126627 - 5126732
Alignment:
Q  890 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 989  Q
    |||| ||||||||||||||| | |||| || |||||||  ||| ||||  |||||||||||||||||| ||||| | ||||| ||| ||| ||||||| |    
T  5126627 tcatcatatatgagataaacagctgtcttcttcacaatgaaaccgttcttaaaaacaacaacaatctcaactttgttaccagcttctatacttgatacta 5126726  T
Q  990 ctctct 995  Q
    ||||||    
T  5126727 ctctct 5126732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 890 - 996
Target Start/End: Complemental strand, 5346326 - 5346220
Alignment:
Q  890 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 989  Q
    |||| |||||||||||||| || |||| || |||||||  |||  ||| ||| |||||| |||| ||| ||||| | ||||||||| ||| ||||||| |    
T  5346326 tcatcatatatgagataaattgctgtcttcttcacaatgaaaccattctcaataacaacgacaacctccactttgttaccaggttctatacttgatacaa 5346227  T
Q  990 ctctctg 996  Q
    |||||||    
T  5346226 ctctctg 5346220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 890 - 996
Target Start/End: Original strand, 5688901 - 5689007
Alignment:
Q  890 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 989  Q
    |||| ||||| |||||||||||||||  || |||||||  ||| |||| ||||||||  ||||| ||| ||||| | || |||||| ||| ||||||| |    
T  5688901 tcatcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacagaaacaacctccactttgttacaaggttctatacttgatacta 5689000  T
Q  990 ctctctg 996  Q
    |||||||    
T  5689001 ctctctg 5689007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 890 - 1003
Target Start/End: Original strand, 36212919 - 36213032
Alignment:
Q  890 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 989  Q
    |||| ||| ||||||||||  | |||| || |||||||  || ||||| ||||||||||||||| ||| | ||||||||||||||| ||| ||||||| |    
T  36212919 tcatcataaatgagataaatcgctgtcttcttcacaatgaaattgttctcaaaaacaacaacaacctccattttatcaccaggttctatacttgatacta 36213018  T
Q  990 ctctctgctcctcc 1003  Q
     ||||||| |||||    
T  36213019 atctctgcccctcc 36213032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 2263 times since January 2019
Visitors: 3815