View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0616_low_11 (Length: 562)
Name: NF0616_low_11
Description: NF0616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0616_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 26 - 505
Target Start/End: Complemental strand, 46712667 - 46712179
Alignment:
| Q |
26 |
atcattatcaattagcaaaataactaccaatattatgtaaattctgggttatgtgagtattaaattattaccttgatggaattagatatgctcataataa |
125 |
Q |
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| T |
46712667 |
atcattatcatttagcaaaataactaccaatattatgtaaattctgggttatgtgagtattaaattattaccttgatggaattagatatgctcataataa |
46712568 |
T |
|
| Q |
126 |
taatatcatttttgtaaaaggagtttctcttacaagtcacagactaaagagttcactttagatatnnnnnnntaaaa------tacaactttaatttacc |
219 |
Q |
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| T |
46712567 |
taatataatttttgtaaaaggagtttctcttacaagtcacagactaaagagttcactttagatataaaaaaaaaaaaaaaaaatacaactttaatttacc |
46712468 |
T |
|
| Q |
220 |
aaacttaatttttctatactgttaattaaatttaatataacccttnnnnnnnttaatataaatataatagttacgaagaaaagtatctttgaatgatgtt |
319 |
Q |
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| T |
46712467 |
aaacttaatttttctatactgttaattaaatttaatataacccttaaaaaaattaatataaatataatagttaccaagaaaactatctttgaatgatgtt |
46712368 |
T |
|
| Q |
320 |
ttaagcttatgatgataaattttgaaggcaatggcatgaaaggaaaagttgggaagcctgcatatctagaagactggaatagcacaatcacacccttaat |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46712367 |
ttaagcttatgatgataaattttgaaggcaatggcatgaaaggaaaagttgggaagcctgcatatctagaagactggaatagcacaatcacacccttaat |
46712268 |
T |
|
| Q |
420 |
agctggtgaatcaacatacaaggttacatttgatttggatgatga---tgatataggaacaccaggagcatttctaattaagaataatc |
505 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
46712267 |
agctggtgaatcaacatacaaggttacatttgatttggatgatgatgatgatataggaacaccaggagcattcctaattaagaataatc |
46712179 |
T |
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