View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0616_low_12 (Length: 489)
Name: NF0616_low_12
Description: NF0616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0616_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 199 - 433
Target Start/End: Original strand, 45889570 - 45889798
Alignment:
| Q |
199 |
agacatgtcaacaaatgctggtgacggcatttagaattagttatgttacgtgtttgnnnnnnnggacaaattacgtgtttgttttatctcacgttaatat |
298 |
Q |
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| T |
45889570 |
agacatgtcaacaaatgctggtgacggcatttagaattagttatgttacgtgtttgtttttttggacaaattacgtgtttgttttatctcacgttaatat |
45889669 |
T |
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| Q |
299 |
atgctccaataacctcgannnnnnnnnatggagaaagagaagaaaataaataaataagagaagccattgtcgcaaacttgtggaataaaactgctcataa |
398 |
Q |
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| T |
45889670 |
atgctccaataacctcga--attttttatggagaaagagaaga----aaaaaaataagagaagccattgtcgcaaacttgtggaataaaactgctcataa |
45889763 |
T |
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| Q |
399 |
tctcataaattttggattatacttaaattcacaag |
433 |
Q |
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| T |
45889764 |
tctcataaattttggattatacttaaattcacaag |
45889798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 45889442 - 45889509
Alignment:
| Q |
71 |
ggctctcaaaaccctcgttttcaccaaaatcaatttcagaggacaacttgcaacaagtaggcctgtag |
138 |
Q |
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| T |
45889442 |
ggctctcaaaaccctcgttttcaccaaaatcaatttcagaggacaacttgcaacaagtaggcctgtag |
45889509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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