View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0616_low_16 (Length: 440)
Name: NF0616_low_16
Description: NF0616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0616_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 30 - 421
Target Start/End: Original strand, 15393857 - 15394253
Alignment:
| Q |
30 |
aagtttgccggcttcaatccaaacttatagatttgtttgaatccttgctttgacttggcagttttttggtaactacataagtttttgttctgtttccaat |
129 |
Q |
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| T |
15393857 |
aagtttgccggcttcaatccaaacttatagatttgtttgaatccttgctttgacttggcagttttttggtaactacataagtttttgttctgtttccaat |
15393956 |
T |
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| Q |
130 |
gttttctgtannnnnnnn-----gtgatggttagggttacactgaggacaagggagtatcagatagaaattagtagttggaagttattgaatacagttcg |
224 |
Q |
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| T |
15393957 |
gttttctgtatttttttttttttgtgatggttagggttacactgaggacaagggagtatcagatagaaattagtagttggaagttattgaatacagttcg |
15394056 |
T |
|
| Q |
225 |
aaatggcttcaccgttagagattgatgaagagaatgataacaaaggtagtatgtgggatttgcaacagaaattcgaccagccaatggatgcagaagcagg |
324 |
Q |
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| T |
15394057 |
aaatggcttcaccgttagagattgatgaagagaatgataacaaaggtagtatgtgggatttgcaacagaaatttgaccagccaatggatgcagaagcagg |
15394156 |
T |
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| Q |
325 |
aaggctcaaaaatatgtacagagaaaaagtatgatgcaatgaattctattttgtttacataggatactgcaatttgcaacgttgaaattttgatgtc |
421 |
Q |
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| T |
15394157 |
aaggctcaaaaatatgtacagagaaaaagtatgatgcaatgaattctattttgtttacataggatactgcaatttgcaactttgaaattttgatgtc |
15394253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 189 - 421
Target Start/End: Original strand, 15385586 - 15385818
Alignment:
| Q |
189 |
agaaattagtagttggaagttattgaatacagttcgaaatggcttcaccgttagagattgatgaagagaatgataacaaaggtagtatgtgggatttgca |
288 |
Q |
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| T |
15385586 |
agaacttaggagttggaagttattgaatcaagttctaaatggcttcgccgttagagattgacgaagagaatgataacaaaggcagtatgtgggatttgga |
15385685 |
T |
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| Q |
289 |
acagaaattcgaccagccaatggatgcagaagcaggaaggctcaaaaatatgtacagagaaaaagtatgatgcaatgaattctattttgtttacatagga |
388 |
Q |
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| T |
15385686 |
acagaaacttgaccagccaatggatgcagaagcaggaaggctcagaaatatgtacagagaaaaagtatgatgcaatgaattctattttgtttacatagga |
15385785 |
T |
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| Q |
389 |
tactgcaatttgcaacgttgaaattttgatgtc |
421 |
Q |
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| T |
15385786 |
aactgcaatttgcaactttgaaattttgatgtc |
15385818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 247 - 359
Target Start/End: Complemental strand, 38669790 - 38669678
Alignment:
| Q |
247 |
tgatgaagagaatgataacaaaggtagtatgtgggatttgcaacagaaattcgaccagccaatggatgcagaagcaggaaggctcaaaaatatgtacaga |
346 |
Q |
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|||||||||| |||||||||||||||||||||||||||| | ||||| | |||||||| ||||| | ||| |||||||| |||| |||||||||||| |
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| T |
38669790 |
tgatgaagagggtgataacaaaggtagtatgtgggatttggatcagaagcttgaccagcctatggaggaagaggcaggaagactcaggaatatgtacaga |
38669691 |
T |
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| Q |
347 |
gaaaaagtatgat |
359 |
Q |
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| T |
38669690 |
gaaaaagtatgat |
38669678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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