View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0616_low_18 (Length: 408)
Name: NF0616_low_18
Description: NF0616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0616_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 4 - 306
Target Start/End: Original strand, 7727603 - 7727905
Alignment:
| Q |
4 |
tgtttggaggagtcttcatcttaattttggacnnnnnnncttatgaagaggtggtttgagtttgggttgagagagtactcaagtttgggtgataagtatg |
103 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7727603 |
tgtttggaggagtcttcatcttaattttggagtttttttcttatgaagaggtggtttgagtttgggttgagagagtactcaagtttgggtgataagtatg |
7727702 |
T |
|
| Q |
104 |
gttttaagctttgctatttatagaattcgtagcagccaggatgtatatctgttttagtgaaagttggtcaaacagaaaggcttaaaataatgagataaga |
203 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
7727703 |
gttttaatctttgctatttatagaattcgtagcagccaggatgtatatctgttttagtgaaagttggtcaaacagaaaggcttaaaataatgagatatga |
7727802 |
T |
|
| Q |
204 |
ccctttgaatgcatccaaccatatatacattgacgtctagggaggtatatgtggagtaaagggctgctaccacaatatatcattaaagagaagggaacaa |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7727803 |
ccctttgaatgcatccaaccatatatacattgacgtctagggaggtgtatgtggagtaaagggctgctaccacaatatatcattaaagagaagggaacaa |
7727902 |
T |
|
| Q |
304 |
aaa |
306 |
Q |
| |
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||| |
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| T |
7727903 |
aaa |
7727905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 45 - 194
Target Start/End: Original strand, 7731814 - 7731965
Alignment:
| Q |
45 |
tatgaagaggtggtttgag-tttgggttgagagagtactcaagtttgggtgataagtatgg-ttttaagctttgctatttatagaattcgtagcagccag |
142 |
Q |
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||||||||||||||||||| |||| ||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
7731814 |
tatgaagaggtggtttgagctttgtgttaagagagtactcaagtttgggtgattagtattaattttaagctttgctatttatagaattcgtagtcgccag |
7731913 |
T |
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| Q |
143 |
gatgtatatctgttttagtgaaagttggtcaaacagaaaggcttaaaataat |
194 |
Q |
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| T |
7731914 |
gatgtatatctgttttagtgaaagttggtcaaacaaggaggcttaaaataat |
7731965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 298 - 393
Target Start/End: Original strand, 7728089 - 7728184
Alignment:
| Q |
298 |
gaacaaaaataacgaggggacataaaggcgcaacctcctaggaattgataaacctatagttaggcaccaagtctattctttacataatattctctt |
393 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
7728089 |
gaacaaaaataacgaggggacataaagccgcaacctcctaggaattgataaacctatagttaggcaccaagtctattctttacatagtattctctt |
7728184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 87 - 200
Target Start/End: Original strand, 7739995 - 7740106
Alignment:
| Q |
87 |
tttgggtgataagtatggttttaagctttgctatttatagaattcgtagcagccaggatgtatatctgttttagtgaaagttggtcaaacagaaaggctt |
186 |
Q |
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||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||| |||||| |
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| T |
7739995 |
tttgggtgataagtatgattttaagctttgctatttatagaaaacgtagcagccagtatg--tatctgttttagtgaaagttggtcaaacaagtaggctt |
7740092 |
T |
|
| Q |
187 |
aaaataatgagata |
200 |
Q |
| |
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|||||||||||||| |
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|
| T |
7740093 |
aaaataatgagata |
7740106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 7699732 - 7699765
Alignment:
| Q |
1 |
acatgtttggaggagtcttcatcttaattttgga |
34 |
Q |
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|||||||||||| ||||||||||||||||||||| |
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| T |
7699732 |
acatgtttggagaagtcttcatcttaattttgga |
7699765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 329 - 392
Target Start/End: Original strand, 3562324 - 3562389
Alignment:
| Q |
329 |
aacctcctaggaattgataaacctatagttaggca--ccaagtctattctttacataatattctct |
392 |
Q |
| |
|
|||||||||| | |||||||||||| | ||||||| |||||||||||||| |||||||||||||| |
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| T |
3562324 |
aacctcctagaagttgataaacctaaaattaggcataccaagtctattcttaacataatattctct |
3562389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 340 - 392
Target Start/End: Original strand, 9748892 - 9748946
Alignment:
| Q |
340 |
aattgataaacctatagttaggca--ccaagtctattctttacataatattctct |
392 |
Q |
| |
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|||||||||||||| ||||||||| || ||||||||||| |||||||||||||| |
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| T |
9748892 |
aattgataaacctaaagttaggcatacctagtctattcttaacataatattctct |
9748946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 34066064 - 34066119
Alignment:
| Q |
329 |
aacctcctaggaattgataaacctatagttaggca--ccaagtctattctttacat |
382 |
Q |
| |
|
|||||||||| ||||| |||||||||| ||||||| |||||||||||||| |||| |
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| T |
34066064 |
aacctcctagaaattgctaaacctataattaggcataccaagtctattcttaacat |
34066119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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