View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0616_low_2 (Length: 1011)

Name: NF0616_low_2
Description: NF0616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0616_low_2
NF0616_low_2
[»] chr5 (3 HSPs)
chr5 (96-304)||(4175257-4175465)
chr5 (96-250)||(4171267-4171423)
chr5 (322-414)||(4175751-4175843)
[»] chr1 (2 HSPs)
chr1 (903-990)||(50053874-50053963)
chr1 (685-717)||(50053966-50053998)
[»] chr6 (3 HSPs)
chr6 (903-990)||(31118187-31118276)
chr6 (685-717)||(31118152-31118184)
chr6 (630-676)||(31118082-31118129)
[»] chr8 (1 HSPs)
chr8 (415-459)||(40948354-40948398)
[»] chr3 (2 HSPs)
chr3 (685-717)||(40396497-40396529)
chr3 (642-676)||(40396440-40396474)


Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-111; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 96 - 304
Target Start/End: Original strand, 4175257 - 4175465
Alignment:
Q  96 gtatccccatttggacttggttcaatcttgaccaaccgtgaagaatattgaatggtatccgtaggcagttgtccagccaaggtttccaaaagtaccctcc 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4175257 gtatccccatttggacttggttcaatcttgaccaaccgtgaagaatattgaatggtatccgtaggcagttgtccagccaaggtttccaaaagtaccctcc 4175356  T
Q  196 tctccactgcacgcaactcttggctgcacaatagcccatacatttcataaatatttattgtaacaatgacaaaaaccaataatgataaatatctaaaata 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4175357 tctccactgcacgcaactcttggctgcacaatagcccatacatttcataaatatttgttgtaacaatgacaaaaaccaataatgataaatatctaaaata 4175456  T
Q  296 agatactac 304  Q
    |||||||||    
T  4175457 agatactac 4175465  T

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Target: chr5; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 96 - 250
Target Start/End: Original strand, 4171267 - 4171423
Alignment:
Q  96 gtatccccatttggacttggttcaatcttgaccaaccgtgaagaatattgaatggtatccgtaggcagttgtccagccaaggtttccaaaagtaccctcc 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||| |  ||  ||||||| |||||||||||||| ||||    
T  4171267 gtatccccatttggacttggttcaatcttgaccaaccgtgaagaatattgaatgctatcaggaggtaactgagcagccaaagtttccaaaagtactctcc 4171366  T
Q  196 tctccactgcacgcaactcttggctgcacaatagccc--atacatttcataaatatt 250  Q
    ||||||||||||||| ||||||||||||||||| |||  || |||||||||||||||    
T  4171367 tctccactgcacgcacctcttggctgcacaataccccttatgcatttcataaatatt 4171423  T

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Target: chr5; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 322 - 414
Target Start/End: Original strand, 4175751 - 4175843
Alignment:
Q  322 ttctatgaaattcataagcaatgtatgttgttagggactattctattgttagaaagagagtgccgataacattcttcttggtctcaattccta 414  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||    
T  4175751 ttctttgaaattcataagcaatgtatgttgttagggactattctattgttagaaagagagtgtcgataacactcttcttagtctcaattccta 4175843  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 903 - 990
Target Start/End: Complemental strand, 50053963 - 50053874
Alignment:
Q  903 ttcaattgattcttgttcaatcccttcttaagttcagatata--gcatgcttaattttgggcttcaattttatactttgattcttgctca 990  Q
    |||||| |||||||| ||||| |||||||||  |||||||||  |||||||||||||| ||| |||||||||||||  ||||||||||||    
T  50053963 ttcaatcgattcttgctcaattccttcttaatatcagatatatagcatgcttaattttcggcgtcaattttatactgcgattcttgctca 50053874  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 685 - 717
Target Start/End: Complemental strand, 50053998 - 50053966
Alignment:
Q  685 cttctctgtttagggtttcattctcactttcaa 717  Q
    |||||||||||||||||||||||||||||||||    
T  50053998 cttctctgtttagggtttcattctcactttcaa 50053966  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 903 - 990
Target Start/End: Original strand, 31118187 - 31118276
Alignment:
Q  903 ttcaattgattcttgttcaatcccttcttaagttcagatat--agcatgcttaattttgggcttcaattttatactttgattcttgctca 990  Q
    |||||| |||||||| ||||| | |||||||  ||||||||  |||||||||||||||  || |||||||||||||  ||||||||||||    
T  31118187 ttcaatcgattcttgctcaattctttcttaatatcagatatatagcatgcttaattttcagcgtcaattttatactaggattcttgctca 31118276  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 685 - 717
Target Start/End: Original strand, 31118152 - 31118184
Alignment:
Q  685 cttctctgtttagggtttcattctcactttcaa 717  Q
    |||||||||||||||||||||||||||||||||    
T  31118152 cttctctgtttagggtttcattctcactttcaa 31118184  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 630 - 676
Target Start/End: Original strand, 31118082 - 31118129
Alignment:
Q  630 atggcgaacacgttt-caaatacgatctctatcttctctgcgaatacg 676  Q
    ||||| ||||||||| ||||||||||||||| ||||||||||||||||    
T  31118082 atggcaaacacgttttcaaatacgatctctaacttctctgcgaatacg 31118129  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 415 - 459
Target Start/End: Original strand, 40948354 - 40948398
Alignment:
Q  415 gggaatggattgtctcctgtataaatgcctccagttttctcctgt 459  Q
    ||||||||||| ||||| || ||||||||||||||||||||||||    
T  40948354 gggaatggattttctccggtgtaaatgcctccagttttctcctgt 40948398  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 685 - 717
Target Start/End: Original strand, 40396497 - 40396529
Alignment:
Q  685 cttctctgtttagggtttcattctcactttcaa 717  Q
    |||||||||||||||||||||||||||||||||    
T  40396497 cttctctgtttagggtttcattctcactttcaa 40396529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 642 - 676
Target Start/End: Original strand, 40396440 - 40396474
Alignment:
Q  642 tttcaaatacgatctctatcttctctgcgaatacg 676  Q
    |||||||||||||||||| ||||||||||||||||    
T  40396440 tttcaaatacgatctctaacttctctgcgaatacg 40396474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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