View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0616_low_20 (Length: 378)
Name: NF0616_low_20
Description: NF0616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0616_low_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 10458311 - 10458684
Alignment:
| Q |
1 |
caaattgtatcaagaacataatgcgtttctatttcatcaagtatggttcaagatgtgat-ttttctttaagtcttgtaacct-gttcaacataatgtgtt |
98 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||| ||||||| ||| |||||||||| |||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
10458311 |
caaattgcatcaagaacataatgtgtttctatttcaacaagtatagttgaagatgtgatattttctttaagtcttgtaaccttgttaaacataatgtgtt |
10458410 |
T |
|
| Q |
99 |
gtcctctttttcatgagctat----ctattaaagcgtcatcttttgttaagaaatgttagaattaggtatgtttctatgatacttgtagccataaatgtt |
194 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
10458411 |
gtcctctttttcatgagctatatatctatttaagcgtcatcttttgttaagaaatgttagaattaggtatgtttctatgatgcttgtagccataaatgtt |
10458510 |
T |
|
| Q |
195 |
accttttaaatgtaattatataatgaaatcgattttatactcaattttaactcatttgattgataaatctaattcaacaagttgacaaataacttgagtt |
294 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
10458511 |
atcttttaaatgtaattatataatgaaatcgattttaacctcaattttacctcatttgattgataaatctaattcaacaagttgacaaataactt--gtt |
10458608 |
T |
|
| Q |
295 |
atttttgagttaattcgattcaagttgtc-----aaccctaatttaccaattctgttaaatgaaagtttttcattcat |
367 |
Q |
| |
|
|||||||||||||||||||||| ||| | |||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
10458609 |
atttttgagttaattcgattca--ttgacaacgtaaccttaatttaccaattcagttaaatgaaagtttttcattcat |
10458684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 161 times since January 2019
Visitors: 3833