View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0616_low_21 (Length: 372)
Name: NF0616_low_21
Description: NF0616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0616_low_21 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 30 - 220
Target Start/End: Complemental strand, 46912532 - 46912344
Alignment:
| Q |
30 |
agtttgtcactatatatggaatcatactacagaatggttactacgtgcatatgattaagtattactacatgtagaattattaaaacaaatggaattaatc |
129 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46912532 |
agtttgtcactatat--ggaatcatactacagaattgttactacgtgcatatgattaagtattactacatgtagaattattaaaacaaatggaattaatc |
46912435 |
T |
|
| Q |
130 |
ccaatatgttcattgctataattttttagaaatttgtttatcccggtttttagctagtagtagaagggttcatttatgggtaggggcagca |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
46912434 |
ccaatatgttcattgctataattttttagaaatttgtttatcccggtttttagctagtagtggaagggttcatttatgggtaggggcagca |
46912344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 267 - 362
Target Start/End: Complemental strand, 46912297 - 46912202
Alignment:
| Q |
267 |
aaagttggaagtgttataattttctgttctgcacctagctagtttcctattttaaattttaaaaaactctctgtttttatacttttgtaatctgtg |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46912297 |
aaagttggaagtgttataattttctgttctgcacctagctagtttcctattttaaattttaaaaaactctctgtttttatacttttgtaatctgtg |
46912202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 552 times since January 2019
Visitors: 3835