View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0616_low_23 (Length: 371)
Name: NF0616_low_23
Description: NF0616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0616_low_23 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 30 - 371
Target Start/End: Original strand, 37662186 - 37662547
Alignment:
| Q |
30 |
gttagtatcttcctcgaaactctcatatttcagccatactctagtgcttta------------------taattactagtacgtagctagtaagtgtggc |
111 |
Q |
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| T |
37662186 |
gttagtatcttcctcgaaactctcatatttcagccatactctagtgctttagaagcataagttttcttataattactagtacgtagctagtaagtgtggc |
37662285 |
T |
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| Q |
112 |
tgcttgtgttgaattgagcattgctaaaaaccatgagaaacnnnnnnnnnnnnn-gagggacatgagaaactatacttatagatatataaattaaacttt |
210 |
Q |
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| T |
37662286 |
tgcttgtgttgaattgagcattgctaaaaaccatgagaaacttttttttttttttgagggacatgagaaactatacttatagatatataaattaaacttt |
37662385 |
T |
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| Q |
211 |
ctggcttctgcatccttttcagtgaaatgtagttggtgtaacaaacaatagataattgagtttatgtctgcaaagtctttt-nnnnnnnnnngaaagagt |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37662386 |
ctggcttctgcatccttttcagtgaaatgtagttggtgtaacaaacaatagataattgagtttatgtctgcaaagtcttttaaaaaaaaaaaaaaagagt |
37662485 |
T |
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| Q |
310 |
ttttgcctgcaaagaaagcttatgcagaaattaaattaagcaaggagtggaattataaaata |
371 |
Q |
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| T |
37662486 |
ttttgcctgcaaagaaagcttatgcagaaattaaaataagcaaggagtggaattataaaata |
37662547 |
T |
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