View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0616_low_25 (Length: 332)

Name: NF0616_low_25
Description: NF0616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0616_low_25
NF0616_low_25
[»] chr5 (17 HSPs)
chr5 (73-332)||(30748739-30748995)
chr5 (77-332)||(30339280-30339532)
chr5 (73-332)||(30434918-30435174)
chr5 (73-332)||(30677919-30678175)
chr5 (73-332)||(30399161-30399417)
chr5 (77-332)||(30243127-30243379)
chr5 (73-328)||(30714185-30714437)
chr5 (77-332)||(30482500-30482752)
chr5 (73-332)||(29871282-29871538)
chr5 (77-332)||(29852395-29852647)
chr5 (80-332)||(4380754-4381003)
chr5 (73-332)||(30059453-30059709)
chr5 (183-332)||(30205606-30205758)
chr5 (280-331)||(29709864-29709915)
chr5 (194-264)||(17982082-17982152)
chr5 (298-332)||(30203246-30203280)
chr5 (207-261)||(30203318-30203372)
[»] chr4 (2 HSPs)
chr4 (73-332)||(20297354-20297610)
chr4 (210-257)||(52351128-52351175)
[»] chr7 (1 HSPs)
chr7 (75-332)||(26706428-26706682)
[»] chr1 (2 HSPs)
chr1 (194-332)||(7582597-7582735)
chr1 (194-332)||(7098511-7098649)


Alignment Details
Target: chr5 (Bit Score: 173; Significance: 5e-93; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 73 - 332
Target Start/End: Complemental strand, 30748995 - 30748739
Alignment:
Q  73 attattcttagtaatttaatttctcttgaacttgagtattgcaacaaaattgtgcggcttccgttacttggtaaactactaccatctctnnnnnnnctga 172  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||   |||||||       || |    
T  30748995 attattcttagtaatttaatttctcttgaacttgagatttgcaacaaaattgtgcggcttccgttacttggtaaactac---catctctaaaaaaactaa 30748899  T
Q  173 gattatatggtatgaataatctgaaatacttggatgatgatgaatctgaggatggtatggaggtgagggttttcccatctctggaggtactccatttact 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||| |||| | |||      
T  30748898 gattatatggtatgaataatctgaaatacttggatgatgatgaatctgagtatggtatggaggtgagcgttttcccatctctagaggaactcaacttaaa 30748799  T
Q  273 atgcctaccaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtct 332  Q
    || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30748798 atccctaccaaacatagagggattattgaaagtggaaagaggggagatgtttccttgtct 30748739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 77 - 332
Target Start/End: Original strand, 30339280 - 30339532
Alignment:
Q  77 ttcttagtaatttaatttctcttgaacttgagtattgcaacaaaattgtgcggcttccgttacttggtaaactactaccatctctnnnnnnnctgagatt 176  Q
    ||||||||||||||||||||||| | |||  | |||||||||||||||||| ||||| |||||||||||||||||   |||||||       || ||| |    
T  30339280 ttcttagtaatttaatttctcttaatctttggaattgcaacaaaattgtgctgcttcagttacttggtaaactac---catctctaaaaaatcttagagt 30339376  T
Q  177 atatggtatgaataatctgaaatacttggatgatgatgaatctgaggatggtatggaggtgagggttttcccatctctggaggtactccatttactatgc 276  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| | ||    
T  30339377 atatcgtatgaataatctgaaatacttggatgatgatgaatctgaggatggtatggaggtgagggttttcccatctctggaggtactctacttacaacgc 30339476  T
Q  277 ctaccaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtct 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30339477 ctaccaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtct 30339532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 73 - 332
Target Start/End: Complemental strand, 30435174 - 30434918
Alignment:
Q  73 attattcttagtaatttaatttctcttgaacttgagtattgcaacaaaattgtgcggcttccgttacttggtaaactactaccatctctnnnnnnnctga 172  Q
    ||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||| ||||||||||||   |||||||       || |    
T  30435174 attattcttagtaatttaatttctcttaaacttggggattgcaacaaaattgtgcggcttccgttatttggtaaactac---catctctaaaaaaactta 30435078  T
Q  173 gattatatggtatgaataatctgaaatacttggatgatgatgaatctgaggatggtatggaggtgagggttttcccatctctggaggtactccatttact 272  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| | ||||     
T  30435077 gagtatatggtatgaataatctgaaatacttggatgatgatgaatctgaggatggtatggaggtgagggctttcccatctttggaggtactcgaattaca 30434978  T
Q  273 atgcctaccaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtct 332  Q
      |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30434977 tgggttaccaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtct 30434918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 73 - 332
Target Start/End: Original strand, 30677919 - 30678175
Alignment:
Q  73 attattcttagtaatttaatttctcttgaacttgagtattgcaacaaaattgtgcggcttccgttacttggtaaactactaccatctctnnnnnnnctga 172  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||   |||||||       ||||    
T  30677919 attattcttagtaatttaatttctcttgaacttgaggaatgcaacaaaattgtgcggcttccgttacgtggtaaactac---catctctaaaaagactga 30678015  T
Q  173 gattatatggtatgaataatctgaaatacttggatgatgatgaatctgaggatggtatggaggtgagggttttcccatctctggaggtactccatttact 272  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||   |||      
T  30678016 gattatctcgtatgaataatctgaaatacttggatgatgatgaatctgaggatggtatgaaggtgagggttttcccatctctggagaaactcttattaga 30678115  T
Q  273 atgcctaccaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtct 332  Q
     |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30678116 ttctctaccaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtct 30678175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 73 - 332
Target Start/End: Complemental strand, 30399417 - 30399161
Alignment:
Q  73 attattcttagtaatttaatttctcttgaacttgagtattgcaacaaaattgtgcggcttccgttacttggtaaactactaccatctctnnnnnnnctga 172  Q
    |||||||||||||||||| ||||||||||||||| | ||||||| ||| ||||||| |||| |||| ||||||||||||   | |||||       |||     
T  30399417 attattcttagtaatttagtttctcttgaacttgggaattgcaagaaagttgtgcgacttcagttaattggtaaactac---cgtctctaaaaaaactgg 30399321  T
Q  173 gattatatggtatgaataatctgaaatacttggatgatgatgaatctgaggatggtatggaggtgagggttttcccatctctggaggtactccatttact 272  Q
     ||||| || |||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  30399320 aattatctgatatggataatctgaaatacttggatgatgatgaatctcaggatggtgtggaggtgagggttttcccatctctggaggaactccatttact 30399221  T
Q  273 atgcctaccaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtct 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30399220 atgcctaccaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtct 30399161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 77 - 332
Target Start/End: Original strand, 30243127 - 30243379
Alignment:
Q  77 ttcttagtaatttaatttctcttgaacttgagtattgcaacaaaattgtgcggcttccgttacttggtaaactactaccatctctnnnnnnnctgagatt 176  Q
    |||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||   ||| |||       |||  |||    
T  30243127 ttcttagtaatttaatttctcttgaacttcggaattgcaacaaaattgtgcggcttccgttacttggtaaactac---catatctaaaaaaactggaatt 30243223  T
Q  177 atatggtatgaataatctgaaatacttggatgatgatgaatctgaggatggtatggaggtgagggttttcccatctctggaggtactccatttactatgc 276  Q
    ||  |  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||   ||     
T  30243224 attcgaaatggataatctgaaatacttggatgatgatgaatctgaggatggtatggaggtgagggttttcccatctctagaggtactccaattatcttgt 30243323  T
Q  277 ctaccaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtct 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30243324 ctaccaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtct 30243379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 73 - 328
Target Start/End: Original strand, 30714185 - 30714437
Alignment:
Q  73 attattcttagtaatttaatttctcttgaacttgagtattgcaacaaaattgtgcggcttccgttacttggtaaactactaccatctctnnnnnnnctga 172  Q
    |||||||||||||||||| ||||||||| ||||    ||||||| ||||||||||||||||||||||||||||||||||   |||||||       ||||    
T  30714185 attattcttagtaatttagtttctcttgtacttctccattgcaagaaaattgtgcggcttccgttacttggtaaactac---catctctaaaaaaactga 30714281  T
Q  173 gattatatggtatgaataatctgaaatacttggatgatgatgaatctgaggatggtatggaggtgagggttttcccatctctggaggtactccatttact 272  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| | |||      
T  30714282 gattatatggtatcaataatctgaaatacttggatgatgatgaatctgaggatggtatggaggtgagggttttcccctctctggagatactcgaattatc 30714381  T
Q  273 atgcctaccaaacatagaggggttattgaaagtggaaagaggggagatgtttcctt 328  Q
     || |||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  30714382 ttgtctacgaaacatagtggggttattgaaagtggaaagaggggagatgtttcctt 30714437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 77 - 332
Target Start/End: Complemental strand, 30482752 - 30482500
Alignment:
Q  77 ttcttagtaatttaatttctcttgaacttgagtattgcaacaaaattgtgcggcttccgttacttggtaaactactaccatctctnnnnnnnctgagatt 176  Q
    |||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||   |||||||       |||  |||    
T  30482752 ttcttagtaatttaatttctcttgaacttcggaattgcaacaaaattgtgcggcttccgttacttggtaaactac---catctctaaaaaaactggaatt 30482656  T
Q  177 atatggtatgaataatctgaaatacttggatgatgatgaatctgaggatggtatggaggtgagggttttcccatctctggaggtactccatttactatgc 276  Q
    || |  |||| |||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||| |||||||  ||  |||||||||| || |    
T  30482655 atcttatatggataatctgaaatacttggatgatgatgaatctcaggatggtgtggaggtgatggttttccgatctctgatggatctccatttacgatac 30482556  T
Q  277 ctaccaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtct 332  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30482555 ctacgaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtct 30482500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 73 - 332
Target Start/End: Complemental strand, 29871538 - 29871282
Alignment:
Q  73 attattcttagtaatttaatttctcttgaacttgagtattgcaacaaaattgtgcggcttccgttacttggtaaactactaccatctctnnnnnnnctga 172  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||   |||||||||||       |||     
T  29871538 attattcttagtaatttaatttctcttaaacttgaggattgcaacaagattgtgcggcttccgttacttggtaaa---ctaccatctctaaaaaaactgg 29871442  T
Q  173 gattatatggtatgaataatctgaaatacttggatgatgatgaatctgaggatggtatggaggtgagggttttcccatctctggaggtactccatttact 272  Q
     ||||| |  |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||   ||| |    
T  29871441 aattatcttatatggataatctgaaatacttggatgatgatgaatctcaggatggtatggaggtgaggattttcccatctctggaggaactcgtatta-t 29871343  T
Q  273 at-gcctaccaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtct 332  Q
    ||    |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  29871342 ataagttaccaaacatagagggtttattgaaagttgaaagaggggagatgtttccttgtct 29871282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 77 - 332
Target Start/End: Complemental strand, 29852647 - 29852395
Alignment:
Q  77 ttcttagtaatttaatttctcttgaacttgagtattgcaacaaaattgtgcggcttccgttacttggtaaactactaccatctctnnnnnnnctgagatt 176  Q
    ||||||||| |||||||||||||||||||  | |||||||||||||||||||||||||||||||| |||||||||   ||| |||        ||  |||    
T  29852647 ttcttagtagtttaatttctcttgaacttcggaattgcaacaaaattgtgcggcttccgttactttgtaaactac---catatctaaaaaagttggtatt 29852551  T
Q  177 atatggtatgaataatctgaaatacttggatgatgatgaatctgaggatggtatggaggtgagggttttcccatctctggaggtactccatttactatgc 276  Q
    ||     ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |  |||| | ||    
T  29852550 attcaaaatggataatctgaaatacttagatgatgatgaatctgaggatggtatggaggtgagggttttcccatctctggagatacttctattacaacgc 29852451  T
Q  277 ctaccaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtct 332  Q
    |||| |||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  29852450 ctacgaaacatagaggggttattgaaagtggaaagagggaagatatttccttgtct 29852395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 80 - 332
Target Start/End: Complemental strand, 4381003 - 4380754
Alignment:
Q  80 ttagtaatttaatttctcttgaactt-gagtattgcaacaaaattgtgcggcttccgttacttggtaaactactaccatctctnnnnnnnctgagattat 178  Q
    |||||||||||||||||||| ||||| | || |||||||||| ||||||||||||||| |||||||||||||    |||||||        ||  |||||    
T  4381003 ttagtaatttaatttctcttaaactttgtgt-ttgcaacaaagttgtgcggcttccgtcacttggtaaactaa---catctctaaaaaaattggaattat 4380908  T
Q  179 atggtatgaataatctgaaatacttggatgatgatgaatctgaggatggtatggaggtgagggttttcccatctctggaggtactccatttactatgcct 278  Q
     | ||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||   || ||    
T  4380907 ttcgtacggataatctgaaatacttggatgatgatgaatttgaggatggtatggaggtgagggttttcccatctctggaggtactcgaattatattgtct 4380808  T
Q  279 accaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtct 332  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  4380807 accaaacataaaggggttattgaaagtggaaagaggggagttgtttccttgtct 4380754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 73 - 332
Target Start/End: Complemental strand, 30059709 - 30059453
Alignment:
Q  73 attattcttagtaatttaatttctcttgaacttgagtattgcaacaaaattgtgcggcttccgttacttggtaaactactaccatctctnnnnnnnctga 172  Q
    |||||||||||||||||| |||||||| ||||| ||  ||| || ||| |||||||||||| |||||||||||   ||||||||||| |       |||     
T  30059709 attattcttagtaatttagtttctcttaaacttaagcgttgtaagaaagttgtgcggcttcagttacttggta---tactaccatctttaaaaaacctgg 30059613  T
Q  173 gattatatggtatgaataatctgaaatacttggatgatgatgaatctgaggatggtatggaggtgagggttttcccatctctggaggtactccatttact 272  Q
     ||||| |  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||   ||| |    
T  30059612 aattatcttatatggataatctgaaatacttggatgatgatgaatctgaggatggtatggaggtgagggttttcccatctctggaggaactcgtatta-t 30059514  T
Q  273 at-gcctaccaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtct 332  Q
    ||    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30059513 atcagttaccaaacatagagggtttattgaaagtggaaagaggggagatgtttccttgtct 30059453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 183 - 332
Target Start/End: Complemental strand, 30205758 - 30205606
Alignment:
Q  183 tatgaataatctgaaatacttggatgatgatgaa---tctgaggatggtatggaggtgagggttttcccatctctggaggtactccatttactatgccta 279  Q
    ||||||| || |||||||||||||||||||||||   ||| | |||||||| | || |||| |||||||||||||||||||||||   |||  |  ||||    
T  30205758 tatgaatgatttgaaatacttggatgatgatgaagaatctcaagatggtattgtggcgaggattttcccatctctggaggtactcatattagaaatccta 30205659  T
Q  280 ccaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtct 332  Q
    |||||| |||| ||||||||||||||||||||||| |||||||||||||||||    
T  30205658 ccaaacttagaagggttattgaaagtggaaagaggtgagatgtttccttgtct 30205606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 280 - 331
Target Start/End: Original strand, 29709864 - 29709915
Alignment:
Q  280 ccaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtc 331  Q
    |||||| ||||||||||| |||| |||||||||| |||| ||||||||||||    
T  29709864 ccaaacttagaggggttagtgaatgtggaaagagaggaggtgtttccttgtc 29709915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 264
Target Start/End: Complemental strand, 17982152 - 17982082
Alignment:
Q  194 tgaaatacttggatgatgatgaatctgaggatggtatggaggtgagggttttcccatctctggaggtactc 264  Q
    |||||||||||||||||||||||| |||  ||||| ||||| |||    |||||||||||||||| |||||    
T  17982152 tgaaatacttggatgatgatgaatttgaaaatggtgtggagatgataaatttcccatctctggagatactc 17982082  T

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Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 332
Target Start/End: Complemental strand, 30203280 - 30203246
Alignment:
Q  298 ttgaaagtggaaagaggggagatgtttccttgtct 332  Q
    |||||||||||||||| ||||||||||||||||||    
T  30203280 ttgaaagtggaaagagaggagatgtttccttgtct 30203246  T

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Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 261
Target Start/End: Complemental strand, 30203372 - 30203318
Alignment:
Q  207 tgatgatgaatctgaggatggtatggaggtgagggttttcccatctctggaggta 261  Q
    ||||||||||||| |  ||||||||||||||||| ||||||||| | ||||||||    
T  30203372 tgatgatgaatctcacaatggtatggaggtgaggattttcccatatttggaggta 30203318  T

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Target: chr4 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 73 - 332
Target Start/End: Original strand, 20297354 - 20297610
Alignment:
Q  73 attattcttagtaatttaatttctcttgaacttgagtattgcaacaaaattgtgcggcttccgttacttggtaaactactaccatctctnnnnnnnctga 172  Q
    |||||||||||||||||| ||||| ||||||||||| |||||||| ||||||||| |||||||||| ||||||||||||   |||||||       ||||    
T  20297354 attattcttagtaatttagtttcttttgaacttgagaattgcaacgaaattgtgcagcttccgttaattggtaaactac---catctctaaaaaaactga 20297450  T
Q  173 gattatatggtatgaataatctgaaatacttggatgatgatgaatctgaggatggtatggaggtgagggttttcccatctctggaggtactccatttact 272  Q
     | ||| ||||||| ||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||| | ||| |    
T  20297451 caatatctggtatgtataatctgaaatacttggatgatgatgaatctcgggatggtagggaggtgagggttttcccatctctggaggtactcgacttatt 20297550  T
Q  273 atgcctaccaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtct 332  Q
     || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20297551 ttgtctacaaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtct 20297610  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 257
Target Start/End: Complemental strand, 52351175 - 52351128
Alignment:
Q  210 tgatgaatctgaggatggtatggaggtgagggttttcccatctctgga 257  Q
    |||||||||| | |||||| ||| ||||||||||||||||||||||||    
T  52351175 tgatgaatctcacgatggtgtgggggtgagggttttcccatctctgga 52351128  T

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Target: chr7 (Bit Score: 124; Significance: 9e-64; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 75 - 332
Target Start/End: Complemental strand, 26706682 - 26706428
Alignment:
Q  75 tattcttagtaatttaatttctcttgaacttgagtattgcaacaaaattgtgcggcttccgttacttggtaaactactaccatctctnnnnnnnctgaga 174  Q
    |||||||||||||||| ||||||||||||||| | ||||||| ||| ||||||||||||||||||||||||||||||   |||||||       |||  |    
T  26706682 tattcttagtaatttagtttctcttgaacttggggattgcaagaaatttgtgcggcttccgttacttggtaaactac---catctctagaaaaactggaa 26706586  T
Q  175 ttatatggtatgaataatctgaaatacttggatgatgatgaatctgaggatggtatggaggtgagggttttcccatctctggaggtactccatttactat 274  Q
    |||| |  ||||  ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||| ||| |||    
T  26706585 ttatcttctatggttaatctgaaatacttggatgatgatgaatctcaggatggcatggaggtgagggttttcccatctctgaaggtactccactta-tat 26706487  T
Q  275 g-cctaccaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtct 332  Q
    |   |||||||||||||||||||||||||||||||||||||  || |||||||||||||    
T  26706486 gagttaccaaacatagaggggttattgaaagtggaaagaggaaaggtgtttccttgtct 26706428  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 332
Target Start/End: Original strand, 7582597 - 7582735
Alignment:
Q  194 tgaaatacttggatgatgatgaatctgaggatggtatggaggtgagggttttcccatctctggaggtactccatttact--atgcct-accaaacataga 290  Q
    |||||||||||||||||||||||| | |  ||||| |||| |||||  ||||||||||||| ||||||||   | || |  ||| || ||||||| ||||    
T  7582597 tgaaatacttggatgatgatgaatttcacaatggtttggaagtgagaattttcccatctcttgaggtact---tataattgatgacttaccaaacttaga 7582693  T
Q  291 ggggttattgaaagtggaaagaggggagatgtttccttgtct 332  Q
    |||||| ||||||||||||| |  ||||||||||||||||||    
T  7582694 ggggttgttgaaagtggaaaaaaaggagatgtttccttgtct 7582735  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 332
Target Start/End: Complemental strand, 7098649 - 7098511
Alignment:
Q  194 tgaaatacttggatgatgatgaatctgaggatggtatggaggtgagggttttcccatctctggaggtactccatttactatgcctaccaaacatagaggg 293  Q
    ||||||||||||||||| |||||| | |  ||||||||||||| ||| ||||||||||||| |||  ||||   ||||   |  | |||||| |||||||    
T  7098649 tgaaatacttggatgataatgaatttcacaatggtatggaggtaaggattttcccatctctagagacactcttgttacgcgggatgccaaacttagaggg 7098550  T
Q  294 gttattgaaagtggaaagaggggagatgtttccttgtct 332  Q
      | ||||||||||||||||  |||| ||||||||||||    
T  7098549 actgttgaaagtggaaagagatgagacgtttccttgtct 7098511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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