View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0616_low_27 (Length: 329)
Name: NF0616_low_27
Description: NF0616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0616_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 93 - 275
Target Start/End: Complemental strand, 18761446 - 18761264
Alignment:
| Q |
93 |
gaagatcaggaagtacaagactgagggggcataaacctaaccagtaaaattatattatctcaacatattctctcattcaaaccaactatatataaaagta |
192 |
Q |
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| T |
18761446 |
gaagatcaggaagtacaagactgagggggcataaacctaaccattaaaattatattatctcaacatattctctcattcaaaccaactatatataaaagta |
18761347 |
T |
|
| Q |
193 |
actaaccggctccttttgctacagcattttggacaatagtggttggtacaaaatcagcttctgccttcagcaataccagtaaa |
275 |
Q |
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| T |
18761346 |
actaaccggctccttttgctacagcattttggacaatagtggttggtacaaaatcagcttctgccttcagcaataccagtaaa |
18761264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 93 - 130
Target Start/End: Original strand, 27292124 - 27292161
Alignment:
| Q |
93 |
gaagatcaggaagtacaagactgagggggcataaacct |
130 |
Q |
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| T |
27292124 |
gaagatcgggaagtacaagactgagggggcataaacct |
27292161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 130
Target Start/End: Complemental strand, 9734432 - 9734395
Alignment:
| Q |
93 |
gaagatcaggaagtacaagactgagggggcataaacct |
130 |
Q |
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| T |
9734432 |
gaagatcaggaagtataagactgagagggcataaacct |
9734395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 130
Target Start/End: Complemental strand, 27997498 - 27997463
Alignment:
| Q |
94 |
aagatcaggaagtacaagactgagggggcataaacct |
130 |
Q |
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|
||||||||||||||||||||| ||||||||||||||| |
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|
| T |
27997498 |
aagatcaggaagtacaagact-agggggcataaacct |
27997463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 130
Target Start/End: Complemental strand, 28054800 - 28054765
Alignment:
| Q |
94 |
aagatcaggaagtacaagactgagggggcataaacct |
130 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |
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|
| T |
28054800 |
aagatcaggaagtacaagact-agggggcataaacct |
28054765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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