View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0616_low_29 (Length: 318)
Name: NF0616_low_29
Description: NF0616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0616_low_29 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 144 - 209
Target Start/End: Complemental strand, 47999805 - 47999741
Alignment:
| Q |
144 |
tttgagccttaagttaattgatggatttccgtcactttgttgtttcattgccataggtttttgttc |
209 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
47999805 |
tttgacccttaagttaattgatggatttc-gtcactttgttgtttcattaccataggttttcgttc |
47999741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 97 - 138
Target Start/End: Complemental strand, 47999885 - 47999844
Alignment:
| Q |
97 |
atgaggtcattcaaatagtcgctagcgacaacaaagtggact |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47999885 |
atgaggtcattcaaatagtcgctagcgacaacaaagtggact |
47999844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 291
Target Start/End: Complemental strand, 47999742 - 47999710
Alignment:
| Q |
259 |
tctggtttgatgttttgggttggctttcatctc |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
47999742 |
tctggtttgatgttttgggttggctttcatctc |
47999710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2789 times since January 2019
Visitors: 3829