View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0616_low_35 (Length: 290)

Name: NF0616_low_35
Description: NF0616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0616_low_35
NF0616_low_35
[»] chr7 (18 HSPs)
chr7 (46-205)||(5254083-5254242)
chr7 (201-279)||(3962120-3962197)
chr7 (201-271)||(30848718-30848788)
chr7 (205-271)||(35445546-35445612)
chr7 (201-279)||(42611952-42612030)
chr7 (201-279)||(48880773-48880851)
chr7 (201-279)||(24395113-24395190)
chr7 (201-279)||(45637853-45637930)
chr7 (201-278)||(4974581-4974658)
chr7 (201-254)||(35876410-35876463)
chr7 (201-254)||(15329440-15329493)
chr7 (201-254)||(34483004-34483057)
chr7 (201-279)||(42696224-42696302)
chr7 (205-254)||(15577697-15577746)
chr7 (201-271)||(25167702-25167766)
chr7 (205-251)||(29737313-29737359)
chr7 (229-279)||(36790340-36790390)
chr7 (201-279)||(37476926-37477004)
[»] chr8 (27 HSPs)
chr8 (201-279)||(3596887-3596965)
chr8 (201-283)||(14128996-14129078)
chr8 (201-279)||(17841696-17841774)
chr8 (201-279)||(26041959-26042037)
chr8 (205-279)||(25581089-25581163)
chr8 (201-279)||(40779975-40780053)
chr8 (201-277)||(8453977-8454052)
chr8 (205-279)||(6108083-6108157)
chr8 (201-279)||(1645810-1645889)
chr8 (204-279)||(32393999-32394073)
chr8 (201-276)||(42754888-42754963)
chr8 (201-279)||(20091647-20091725)
chr8 (201-279)||(37985902-37985979)
chr8 (204-277)||(15187704-15187776)
chr8 (201-278)||(35353183-35353260)
chr8 (205-271)||(32064894-32064961)
chr8 (201-254)||(24211218-24211271)
chr8 (201-277)||(34665525-34665600)
chr8 (205-276)||(39772652-39772723)
chr8 (201-254)||(10044514-10044567)
chr8 (205-279)||(30055657-30055731)
chr8 (201-244)||(1503689-1503732)
chr8 (215-279)||(38017075-38017137)
chr8 (205-276)||(27835303-27835374)
chr8 (201-238)||(31347622-31347659)
chr8 (205-254)||(41819618-41819667)
chr8 (205-271)||(37132531-37132596)
[»] chr5 (17 HSPs)
chr5 (201-279)||(25398379-25398457)
chr5 (201-279)||(33584175-33584253)
chr5 (201-279)||(3521853-3521930)
chr5 (200-279)||(37321638-37321717)
chr5 (201-279)||(4892343-4892421)
chr5 (201-279)||(8145515-8145592)
chr5 (201-279)||(38899572-38899650)
chr5 (201-279)||(2477777-2477855)
chr5 (201-271)||(6043358-6043427)
chr5 (201-279)||(14138809-14138886)
chr5 (205-279)||(3362919-3362994)
chr5 (201-276)||(4433854-4433928)
chr5 (201-279)||(12850942-12851021)
chr5 (201-279)||(11360977-11361055)
chr5 (201-254)||(12614584-12614637)
chr5 (201-279)||(22912903-22912978)
chr5 (208-279)||(27481963-27482035)
[»] chr4 (23 HSPs)
chr4 (201-279)||(46441985-46442063)
chr4 (201-276)||(44893059-44893134)
chr4 (201-276)||(44893570-44893645)
chr4 (201-279)||(36073491-36073568)
chr4 (201-279)||(9089011-9089089)
chr4 (201-279)||(22199401-22199478)
chr4 (201-279)||(47290207-47290285)
chr4 (201-279)||(53123172-53123250)
chr4 (204-277)||(2624980-2625053)
chr4 (201-279)||(49387733-49387812)
chr4 (205-279)||(24128380-24128454)
chr4 (201-271)||(31078665-31078735)
chr4 (201-279)||(4751587-4751666)
chr4 (204-279)||(7744961-7745036)
chr4 (208-279)||(50156432-50156502)
chr4 (205-278)||(21802170-21802242)
chr4 (201-279)||(36073088-36073170)
chr4 (201-254)||(33530530-33530583)
chr4 (201-278)||(23964310-23964388)
chr4 (205-279)||(30563350-30563424)
chr4 (201-279)||(10442633-10442713)
chr4 (205-269)||(37934792-37934855)
chr4 (208-271)||(17655579-17655642)
[»] chr2 (14 HSPs)
chr2 (201-279)||(23267908-23267986)
chr2 (201-279)||(33380348-33380426)
chr2 (208-279)||(7475361-7475432)
chr2 (205-283)||(10662024-10662103)
chr2 (201-279)||(21936223-21936301)
chr2 (201-279)||(35160898-35160978)
chr2 (205-279)||(3989217-3989291)
chr2 (201-277)||(13354990-13355067)
chr2 (205-279)||(9293425-9293500)
chr2 (205-279)||(31174685-31174758)
chr2 (201-279)||(43331053-43331131)
chr2 (205-254)||(16767312-16767361)
chr2 (208-279)||(9723546-9723618)
chr2 (201-240)||(34321003-34321042)
[»] chr1 (20 HSPs)
chr1 (201-279)||(36966554-36966632)
chr1 (201-279)||(51737646-51737724)
chr1 (204-279)||(41876291-41876366)
chr1 (201-279)||(19015545-19015623)
chr1 (201-279)||(6883628-6883706)
chr1 (201-279)||(25463817-25463895)
chr1 (205-271)||(37821684-37821750)
chr1 (201-279)||(40215129-40215207)
chr1 (205-279)||(44094839-44094912)
chr1 (201-276)||(20304976-20305052)
chr1 (205-279)||(25973550-25973622)
chr1 (201-279)||(9910137-9910217)
chr1 (201-254)||(18404614-18404667)
chr1 (205-279)||(3559758-3559832)
chr1 (206-254)||(10167565-10167613)
chr1 (201-279)||(32000112-32000191)
chr1 (201-240)||(33786477-33786516)
chr1 (201-240)||(40273888-40273927)
chr1 (201-254)||(44690868-44690921)
chr1 (208-276)||(22157391-22157459)
[»] scaffold0228 (3 HSPs)
scaffold0228 (201-276)||(26080-26155)
scaffold0228 (201-276)||(16128-16203)
scaffold0228 (217-276)||(8546-8605)
[»] scaffold0204 (1 HSPs)
scaffold0204 (201-279)||(4537-4615)
[»] chr3 (26 HSPs)
chr3 (201-283)||(37216899-37216981)
chr3 (201-279)||(37522194-37522272)
chr3 (201-276)||(34482734-34482809)
chr3 (201-271)||(3137260-3137330)
chr3 (205-279)||(3574376-3574450)
chr3 (205-279)||(19650750-19650823)
chr3 (201-279)||(22426191-22426268)
chr3 (201-279)||(30385542-30385619)
chr3 (201-271)||(8320428-8320499)
chr3 (201-279)||(33113934-33114013)
chr3 (205-279)||(3456205-3456279)
chr3 (201-254)||(3089585-3089638)
chr3 (205-279)||(48161046-48161121)
chr3 (201-254)||(2754885-2754938)
chr3 (201-254)||(6042043-6042096)
chr3 (201-278)||(26612891-26612965)
chr3 (205-278)||(33145854-33145927)
chr3 (201-272)||(42921273-42921344)
chr3 (201-254)||(47738277-47738330)
chr3 (201-253)||(46919061-46919113)
chr3 (213-279)||(11347409-11347476)
chr3 (205-279)||(42298005-42298077)
chr3 (205-254)||(33839701-33839750)
chr3 (205-276)||(36864883-36864952)
chr3 (209-279)||(24343688-24343760)
chr3 (201-279)||(41224374-41224453)
[»] scaffold0178 (1 HSPs)
scaffold0178 (201-279)||(11762-11840)
[»] chr6 (16 HSPs)
chr6 (201-279)||(17175867-17175945)
chr6 (201-279)||(33696837-33696916)
chr6 (201-279)||(18889490-18889567)
chr6 (205-279)||(32702346-32702420)
chr6 (201-279)||(6031586-6031665)
chr6 (201-279)||(6127417-6127496)
chr6 (204-271)||(18365423-18365489)
chr6 (204-271)||(18370687-18370753)
chr6 (205-279)||(33695176-33695251)
chr6 (201-271)||(2309269-2309339)
chr6 (201-260)||(23290927-23290986)
chr6 (205-279)||(28675289-28675363)
chr6 (224-279)||(25987071-25987126)
chr6 (201-271)||(11548435-11548505)
chr6 (218-271)||(9752109-9752161)
chr6 (205-254)||(17705319-17705367)
[»] scaffold0471 (1 HSPs)
scaffold0471 (205-279)||(12983-13057)
[»] scaffold0096 (1 HSPs)
scaffold0096 (201-279)||(41152-41229)
[»] scaffold0085 (1 HSPs)
scaffold0085 (204-279)||(47991-48065)
[»] scaffold0665 (1 HSPs)
scaffold0665 (231-283)||(3200-3252)


Alignment Details
Target: chr7 (Bit Score: 160; Significance: 3e-85; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 46 - 205
Target Start/End: Original strand, 5254083 - 5254242
Alignment:
Q  46 gttgtatccaaataataactatgtcatctcacatttaaatattgttttttagttagtttatttggagggagggtagagattttgttcttgtgtttttgga 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5254083 gttgtatccaaataataactatgtcatctcacatttaaatattgttttttagttagtttatttggagggagggtagagattttgttcttgtgtttttgga 5254182  T
Q  146 ctaatgtttagtaagtaattggttgttttatgtcatttaaattgagagatatgtaatggc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5254183 ctaatgtttagtaagtaattggttgttttatgtcatttaaattgagagatatgtaatggc 5254242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 3962197 - 3962120
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||| |||||||    
T  3962197 atggcacaataatcacctttagatttcagtctcatttattaatctttcataaaa-aaaaatacataacacccaccaccc 3962120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 201 - 271
Target Start/End: Complemental strand, 30848788 - 30848718
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacacc 271  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  30848788 atggcacaataatcacctttaaatttcagtctcatttattaatctttcataaaaaaaagatacataacacc 30848718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 205 - 271
Target Start/End: Complemental strand, 35445612 - 35445546
Alignment:
Q  205 cacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacacc 271  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  35445612 cacaataatcacctttagatttcagtctcatttattaatctttcataaaaaaaagatacataacacc 35445546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 42612030 - 42611952
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||| |||||||||||| |||||||    
T  42612030 atggcacaataatcacctttagatttcagtcttatttattaatctttcataaaaaaaaaatacataacacccaccaccc 42611952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 48880773 - 48880851
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    |||||||||||||||| |||||||||| || ||||||||||||||||||||||| |||||||||||||||| |||||||    
T  48880773 atggcacaataatcacatttagatttcagtttcatttattaatctttcataaaaaaaagatacataacacccaccaccc 48880851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 24395190 - 24395113
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| | | |||||||||||| |||||||    
T  24395190 atggcacaataatcacctttagatttcagtctcatttattaatctttcataaaa-ataaatacataacacccaccaccc 24395113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 45637930 - 45637853
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||| | |||||||    
T  45637930 atggcacaataatcacctttagatttcagtctcatttattaatctttcataaaa-aaaaatacataacatccaccaccc 45637853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 201 - 278
Target Start/End: Original strand, 4974581 - 4974658
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccacc 278  Q
    ||||||||||||||||| ||||||||| |||||||||||||| ||||||||||| ||| |||||||||||| ||||||    
T  4974581 atggcacaataatcacccttagatttcagtctcatttattaacctttcataaaaaaaaaatacataacacccaccacc 4974658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 35876463 - 35876410
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaa 254  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  35876463 atggcacaataatcacctttagatttcagtctcatttattaatctttcataaaa 35876410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 15329493 - 15329440
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaa 254  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  15329493 atggcacaataatcacttttagatttcagtctcatttattaatctttcataaaa 15329440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 34483057 - 34483004
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaa 254  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  34483057 atggcacaataatcacctttagatttcaatctcatttattaatctttcataaaa 34483004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 42696302 - 42696224
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    |||| |||||||||||| ||||||||| ||||||||||||||  |||||||||| ||| |||||||||| | |||||||    
T  42696302 atggtacaataatcacccttagatttcagtctcatttattaacttttcataaaaaaaaaatacataacatccaccaccc 42696224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 15577697 - 15577746
Alignment:
Q  205 cacaataatcacctttagatttcggtctcatttattaatctttcataaaa 254  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  15577697 cacaataatcacctttagatttcagtctcatttattaatcttttataaaa 15577746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 271
Target Start/End: Original strand, 25167702 - 25167766
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacacc 271  Q
    ||||||||||||||||||||||||||| ||||||      |||||||||||||| ||||||||||||||||    
T  25167702 atggcacaataatcacctttagatttcagtctca------aatctttcataaaaaaaagatacataacacc 25167766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 251
Target Start/End: Complemental strand, 29737359 - 29737313
Alignment:
Q  205 cacaataatcacctttagatttcggtctcatttattaatctttcata 251  Q
    ||||||||||||| ||||||||| |||||||||||||| ||||||||    
T  29737359 cacaataatcacccttagatttcagtctcatttattaacctttcata 29737313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 279
Target Start/End: Original strand, 36790340 - 36790390
Alignment:
Q  229 gtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    |||||||||||||| ||||||||||| ||| |||||||||||| |||||||    
T  36790340 gtctcatttattaacctttcataaaacaaaaatacataacacccaccaccc 36790390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 37476926 - 37477004
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||||||| ||||||||| |||||||||||| || ||  | | || ||| |||||||||||| |||||||    
T  37476926 atggcacaataatcacccttagatttcagtctcatttattcattttatacagaaaaaaaatacataacacccaccaccc 37477004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 8e-30; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 3596887 - 3596965
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  3596887 atggcacaataatcacctttagatttcagtctcatttattaatctttcataaaaaaaagatacataacacccaccaccc 3596965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 201 - 283
Target Start/End: Complemental strand, 14129078 - 14128996
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccctatg 283  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||| |||||||||||    
T  14129078 atggcacaataatcacctttagatttcagtctcatttattaatctttcataaaaaaaaaatacataacacccaccaccctatg 14128996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 17841696 - 17841774
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  17841696 atggcacaataatcacctttagatttcagtctcatttattaatctttcataaaaaaaagatacataacacccaccaccc 17841774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 26041959 - 26042037
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  26041959 atggcacaataatcacctttagatttcagtctcatttattaatctttcataaaaaaaagatacataacacccaccaccc 26042037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 205 - 279
Target Start/End: Original strand, 25581089 - 25581163
Alignment:
Q  205 cacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  25581089 cacaataatcacctttagatttcagtctcatttattaatctttcataaaaaaaagatacataacacccaccaccc 25581163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 40779975 - 40780053
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| | |||||||    
T  40779975 atggcacaataatcacctttagatttcagtctcatttattaatctttcataaaaaaaagatacataacatccaccaccc 40780053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 201 - 277
Target Start/End: Complemental strand, 8454052 - 8453977
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccac 277  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||    
T  8454052 atggcacaataatcacctttagatttcagtctcatttattaatctttcataaaa-aaagatacataacacccaccac 8453977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 205 - 279
Target Start/End: Original strand, 6108083 - 6108157
Alignment:
Q  205 cacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||| |||||||    
T  6108083 cacaataatcacctttagatttcagtctcatttattaatctttcataaaaagaagatacataacacccaccaccc 6108157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 1645810 - 1645889
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcat-aaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||| |||||||||||| |||||||    
T  1645810 atggcacaataatcacctttagatttcagtctcatttattaatctttcataaaaaaaaaaatacataacacccaccaccc 1645889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 204 - 279
Target Start/End: Complemental strand, 32394073 - 32393999
Alignment:
Q  204 gcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||| |||||||    
T  32394073 gcacaataatcacctttagatttcagtctcatttattaatctttcataaaa-aaaaatacataacacctaccaccc 32393999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 201 - 276
Target Start/End: Original strand, 42754888 - 42754963
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgacca 276  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||| ||||    
T  42754888 atggtacaataatcacctttagatttcagtctcatttattaatctttcataaaaaaaaaatacataacacccacca 42754963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 20091647 - 20091725
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||||||| ||||||||| |||||||||||||| ||||||||||| ||| |||||||||||| |||||||    
T  20091647 atggcacaataatcacccttagatttcagtctcatttattaacctttcataaaaaaaaaatacataacacccaccaccc 20091725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 37985902 - 37985979
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||| |||||||||||| |||||||    
T  37985902 atggcacaataatcacctttagatttcagtcccatttattaatctttcataaaa-aaaaatacataacacccaccaccc 37985979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 204 - 277
Target Start/End: Complemental strand, 15187776 - 15187704
Alignment:
Q  204 gcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccac 277  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||| |||||    
T  15187776 gcacaataatcacctttagatttcagtctcatttattaatctttcataaaa-aaaaatacataacacccaccac 15187704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 201 - 278
Target Start/End: Complemental strand, 35353260 - 35353183
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccacc 278  Q
    ||||||||||||||||||||| ||||   ||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  35353260 atggcacaataatcacctttaaattttaatctcatttattaatctttcataaaaaaaagatacataacacccaccacc 35353183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 205 - 271
Target Start/End: Complemental strand, 32064961 - 32064894
Alignment:
Q  205 cacaataatcacctttagatttcggtctcatttattaatctttcat-aaaagaaagatacataacacc 271  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||    
T  32064961 cacaataatcacctttagatttcagtctcatttattaatctttcataaaaaaaaagatacataacacc 32064894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 201 - 254
Target Start/End: Original strand, 24211218 - 24211271
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaa 254  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  24211218 atggcacaataatcacctttagatttcagtctcatttattaatctttcataaaa 24211271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 201 - 277
Target Start/End: Complemental strand, 34665600 - 34665525
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccac 277  Q
    ||||||||||||||||| ||||||||| |||||||||||||| ||||||||||| ||| |||||||||||| |||||    
T  34665600 atggcacaataatcacccttagatttcagtctcatttattaacctttcataaaa-aaaaatacataacacccaccac 34665525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 205 - 276
Target Start/End: Original strand, 39772652 - 39772723
Alignment:
Q  205 cacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgacca 276  Q
    ||||||||||||||||||||||| || || |||||||||||||||||||| ||| |||||||||||| ||||    
T  39772652 cacaataatcacctttagatttcagtttcgtttattaatctttcataaaaaaaaaatacataacacccacca 39772723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 10044567 - 10044514
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaa 254  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  10044567 atggcacaataatcacctttagatttcaatctcatttattaatctttcataaaa 10044514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 205 - 279
Target Start/End: Complemental strand, 30055731 - 30055657
Alignment:
Q  205 cacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||| ||||||||  |||||||||||||| ||||||||||| ||| |||||||||| | |||||||    
T  30055731 cacaataatcacccttagattttagtctcatttattaacctttcataaaaaaaaaatacataacatccaccaccc 30055657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 244
Target Start/End: Original strand, 1503689 - 1503732
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatc 244  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  1503689 atggcacaataatcacctttagatttcagtctcatttattaatc 1503732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 279
Target Start/End: Complemental strand, 38017137 - 38017075
Alignment:
Q  215 acctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||| ||||||||||||||||||||  |||| ||| |||||||||||| |||||||    
T  38017137 acctttagatttcagtctcatttattaatctttc--aaaaaaaaaatacataacacccaccaccc 38017075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 276
Target Start/End: Original strand, 27835303 - 27835374
Alignment:
Q  205 cacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgacca 276  Q
    ||||||||||| | |||||||||  ||||||||||||| |||| |||||| ||| |||||||||||| ||||    
T  27835303 cacaataatcatccttagatttcaatctcatttattaaccttttataaaacaaaaatacataacacccacca 27835374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 31347622 - 31347659
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcattta 238  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  31347622 atggcacaataatcacctttagatttcagtctcattta 31347659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 41819618 - 41819667
Alignment:
Q  205 cacaataatcacctttagatttcggtctcatttattaatctttcataaaa 254  Q
    ||||||||||||| ||||||||| |||||||||||||| || ||||||||    
T  41819618 cacaataatcacccttagatttcagtctcatttattaacctatcataaaa 41819667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 271
Target Start/End: Original strand, 37132531 - 37132596
Alignment:
Q  205 cacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacacc 271  Q
    ||||||||||||| ||||||||| |||| ||||||||| |||||| |||| ||| | ||||||||||    
T  37132531 cacaataatcacccttagatttcagtcttatttattaacctttca-aaaaaaaaaaaacataacacc 37132596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 8e-30; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 25398457 - 25398379
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  25398457 atggcacaataatcacctttagatttcagtctcatttattaatctttcataaaaaaaagatacataacacccaccaccc 25398379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 33584175 - 33584253
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  33584175 atggcacaataatcacctttagatttcagtctcatttattaatctttcataaaaaaaagatacataacacccaccaccc 33584253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 3521853 - 3521930
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  3521853 atggcacaataatcacctttagatttcagtctcatttattaatctttcataaaa-aaagatacataacacccaccaccc 3521930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 200 - 279
Target Start/End: Original strand, 37321638 - 37321717
Alignment:
Q  200 aatggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||| |||||||||||| |||||||    
T  37321638 aatggcacaataatcacctttagatttcagtctcatttattaatctttcataaataaaaaatacataacacccaccaccc 37321717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 4892421 - 4892343
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| |||  ||||||||||||||| |||||||    
T  4892421 atggcacaataatcacctttagatttcagtctcatttattaatctttcattaaaagaagatacataacacccaccaccc 4892343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 8145592 - 8145515
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||| |||||||    
T  8145592 atggcacaataatcacctttagatttcagtctcatttattaatctttcataaaa-aaaaatacataacacccaccaccc 8145515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 38899572 - 38899650
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||| |||||||    
T  38899572 atggcacaataaccacctttagatttcagtctcatttattaatctttcataaaaaaaagatatataacacccaccaccc 38899650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 2477855 - 2477777
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    |||||||||| |||||||||||||||| |||| ||||||||||||||||||||| ||| |||||||||||| |||||||    
T  2477855 atggcacaatgatcacctttagatttcagtcttatttattaatctttcataaaaaaaaaatacataacacccaccaccc 2477777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 201 - 271
Target Start/End: Original strand, 6043358 - 6043427
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacacc 271  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||    
T  6043358 atggcacaataatcacctttagatttcagtctcatttattaatctttcataaaa-aaaaatacataacacc 6043427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 14138886 - 14138809
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||| |||||||||||| |||||||    
T  14138886 atggcacaataatcacctttagatttcaatctcatttattaatctttcataaaa-aaaaatacataacacccaccaccc 14138809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 205 - 279
Target Start/End: Complemental strand, 3362994 - 3362919
Alignment:
Q  205 cacaataatcacctttagatttcggtctcatttattaatctttcat-aaaagaaagatacataacaccgaccaccc 279  Q
    |||||||| |||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||| |||||||    
T  3362994 cacaataaccacctttagatttcagtctcatttattaatctttcataaaaaaaaagatacataacacccaccaccc 3362919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 201 - 276
Target Start/End: Original strand, 4433854 - 4433928
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgacca 276  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||| |||||||||||| ||||    
T  4433854 atggcacaataatcacctttagatttcagtcttatttattaatctttcataaaa-aaaaatacataacacccacca 4433928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 12851021 - 12850942
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaaga-aagatacataacaccgaccaccc 279  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||||||| | || |||||||||||| |||||||    
T  12851021 atggcacaataaccacctttagatttcagtctcatttattaatctttcataaaaaagaaaatacataacacccaccaccc 12850942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 11360977 - 11361055
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||||| |||||||||||  ||| |||||||||||||||||| || ||| |||||||||||| |||||||    
T  11360977 atggcacaataatcatctttagatttcaatctaatttattaatctttcatacaaaaaaaatacataacacccaccaccc 11361055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 201 - 254
Target Start/End: Original strand, 12614584 - 12614637
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaa 254  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  12614584 atggcacaataatcacctttagatttcagtctcatttattaacctttcataaaa 12614637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 22912903 - 22912978
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||||||| ||||||||| ||||||||||||  ||| |||||||| ||| |||||||||| | |||||||    
T  22912903 atggcacaataatcacccttagatttcagtctcatttatt--tctctcataaaa-aaaaatacataacatccaccaccc 22912978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 279
Target Start/End: Complemental strand, 27482035 - 27481963
Alignment:
Q  208 aataatcacctttagatttcgg-tctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    |||||||||||||||||||    ||| ||||||||| |||| |||||| ||| |||||||||||| |||||||    
T  27482035 aataatcacctttagatttttaatcttatttattaaccttttataaaaaaaaaatacataacacccaccaccc 27481963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 8e-30; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 46442063 - 46441985
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  46442063 atggcacaataatcacctttagatttcagtctcatttattaatctttcataaaaaaaagatacataacacccaccaccc 46441985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 201 - 276
Target Start/End: Original strand, 44893059 - 44893134
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgacca 276  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||    
T  44893059 atggcacaataatcacctttagatttcagtctcatttattaatctttcataaaaaaaagatacataacacccacca 44893134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 201 - 276
Target Start/End: Complemental strand, 44893645 - 44893570
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgacca 276  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||    
T  44893645 atggcacaataatcacctttagatttcagtctcatttattaatctttcataaaaaaaagatacataacacccacca 44893570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 36073568 - 36073491
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  36073568 atggcacaataatcacctttagatttcagtctcatttattaatctttcataaaa-aaagatacataacacccaccaccc 36073491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 9089089 - 9089011
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||| || |||||||||||||||| |||||||    
T  9089089 atggcacaataatcatctttagatttcagtctcatttattaatctttcatacaaaaaagatacataacacccaccaccc 9089011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 22199478 - 22199401
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||| |||||||    
T  22199478 atggcacaataatcacctttagatttcagtctcatttattaatctttcataaaa-aaaaatacataacacccaccaccc 22199401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 47290285 - 47290207
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    |||| |||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||| |||||||    
T  47290285 atggtacaataatcacctttagatttcagtctcatttattattctttcataaaaaaaagatacataacacccaccaccc 47290207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 53123250 - 53123172
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||| || |||||||||||||||| |||||||    
T  53123250 atggcacaataatcatctttagatttcagtctcatttattaatctttcatacaaaaaagatacataacacccaccaccc 53123172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 204 - 277
Target Start/End: Complemental strand, 2625053 - 2624980
Alignment:
Q  204 gcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccac 277  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||| |||||    
T  2625053 gcacaataatcacctttagatttcagtctcatttattaatctttcataaaaaaaaaatacataacacccaccac 2624980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 49387733 - 49387812
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcat-aaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||| | |||||||    
T  49387733 atggcacaataatcacctttagatttcagtctcatttattaatctttcataaaaaaaaagatacataacatccaccaccc 49387812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 205 - 279
Target Start/End: Complemental strand, 24128454 - 24128380
Alignment:
Q  205 cacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||| | |||||||    
T  24128454 cacaataattacctttagatttcagtctcatttattaatctttcataaaaaaaagatacataacatccaccaccc 24128380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 201 - 271
Target Start/End: Original strand, 31078665 - 31078735
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacacc 271  Q
    ||||||||||||||| |||||||||||  ||||||||||||||||||||||||| ||||||||||||||||    
T  31078665 atggcacaataatcatctttagatttcaatctcatttattaatctttcataaaaaaaagatacataacacc 31078735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 4751666 - 4751587
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaaga-aagatacataacaccgaccaccc 279  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||||||| | || |||||||||||| |||||||    
T  4751666 atggcacaataaccacctttagatttcagtctcatttattaatctttcataaaaaagaaaatacataacacccaccaccc 4751587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 204 - 279
Target Start/End: Original strand, 7744961 - 7745036
Alignment:
Q  204 gcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||||||||||||||  |||||||||||||| |||||||||| ||| |||||||||||| |||||||    
T  7744961 gcacaataatcacctttagatttcaatctcatttattaatatttcataaaaaaaaaatacataacacccaccaccc 7745036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 50156432 - 50156502
Alignment:
Q  208 aataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  50156432 aataatcacctt-agatttcagtctcatttattaatctttcataaaaaaaagatacataacacccaccaccc 50156502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 205 - 278
Target Start/End: Original strand, 21802170 - 21802242
Alignment:
Q  205 cacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccacc 278  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||| ||| |||||||||||| ||||||    
T  21802170 cacaataatcacccttagatttcagtctcatttattaatctttcataaaa-aaaaatacataacacccaccacc 21802242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 36073170 - 36073088
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcat----aaaagaaagatacataacaccgaccaccc 279  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||    |||| |||||||||||||||| |||||||    
T  36073170 atggcacaataaccacctttagatttcagtctcatttattaatctttcataaaaaaaaaaaagatacataacacccaccaccc 36073088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 201 - 254
Target Start/End: Original strand, 33530530 - 33530583
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaa 254  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  33530530 atggcacaataatcacctttagatttcagtcttatttattaatctttcataaaa 33530583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 201 - 278
Target Start/End: Original strand, 23964310 - 23964388
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcat-aaaagaaagatacataacaccgaccacc 278  Q
    |||||| |||||||| |||||||||||  ||||||||||||||||||||| |||| ||| |||||||||||| ||||||    
T  23964310 atggcataataatcatctttagatttcaatctcatttattaatctttcataaaaaaaaaaatacataacacccaccacc 23964388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 205 - 279
Target Start/End: Complemental strand, 30563424 - 30563350
Alignment:
Q  205 cacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||  ||||||||| |||| ||||||||| ||||||||||| ||| |||||||||||| |||||||    
T  30563424 cacaataatcacacttagatttcagtcttatttattaacctttcataaaaaaaaaatacataacacccaccaccc 30563350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 10442633 - 10442713
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcattta-ttaatctttc-ataaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||| | |||| ||| | |||||||||| |||||||    
T  10442633 atggcacaataatcacctttagatttcagtctcatttatttaatctttcaaaaaaaaaaaaaaacataacacccaccaccc 10442713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 205 - 269
Target Start/End: Original strand, 37934792 - 37934855
Alignment:
Q  205 cacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataaca 269  Q
    ||||||||||||| |||||||||  ||||||||||||| ||||||||||| ||| ||||||||||    
T  37934792 cacaataatcacccttagatttcaatctcatttattaacctttcataaaa-aaaaatacataaca 37934855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 271
Target Start/End: Complemental strand, 17655642 - 17655579
Alignment:
Q  208 aataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacacc 271  Q
    |||||| ||||||||||||| |||||||||||||| ||||||||||| ||| | | ||||||||    
T  17655642 aataattacctttagatttcagtctcatttattaacctttcataaaaaaaatacatataacacc 17655579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 8e-30; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 23267908 - 23267986
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  23267908 atggcacaataatcacctttagatttcagtctcatttattaatctttcataaaaaaaagatacataacacccaccaccc 23267986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 33380426 - 33380348
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||| |||||||    
T  33380426 atggcacaataatcacctttagatttcagtctcatttattaatctttcattaaaaaaagatacataacacccaccaccc 33380348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 7475361 - 7475432
Alignment:
Q  208 aataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  7475361 aataatcacctttagatttcagtctcatttattaatctttcataaaaaaaagatacataacacccaccaccc 7475432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 205 - 283
Target Start/End: Complemental strand, 10662103 - 10662024
Alignment:
Q  205 cacaataatcacctttagatttcggtctcatttattaatctttcat-aaaagaaagatacataacaccgaccaccctatg 283  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||| |||||||||||    
T  10662103 cacaataatcacctttagatttcagtctcatttattaatctttcataaaaaaaaagatacataacacccaccaccctatg 10662024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 21936301 - 21936223
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||| |||||||||||| |||||||    
T  21936301 atggcacaataatcacctttagatttcagtttcatttattaatctttcataaaaaaaaaatacataacacccaccaccc 21936223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 35160978 - 35160898
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcat--aaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||  |||| |||||||||||||||| |||||||    
T  35160978 atggcacaataatcacctttagatttcagtctcatttattaatctttcataaaaaaaaaagatacataacacccaccaccc 35160898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 205 - 279
Target Start/End: Complemental strand, 3989291 - 3989217
Alignment:
Q  205 cacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||| |||||||    
T  3989291 cacaataataacctttagatttcagtctcatttattaatctttcataaaaaaaaaatacataacacccaccaccc 3989217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 201 - 277
Target Start/End: Complemental strand, 13355067 - 13354990
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcat-aaaagaaagatacataacaccgaccac 277  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||||| |||| ||| |||||||||||| |||||    
T  13355067 atggcacaataatcacttttagatttcagtctcatttattaatctttcataaaaaaaaaaatacataacacccaccac 13354990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 205 - 279
Target Start/End: Original strand, 9293425 - 9293500
Alignment:
Q  205 cacaataatcacctttagatttcggtctcatttattaatctttcat-aaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||| |||| ||| |||||||||||| |||||||    
T  9293425 cacaataatcacccttagatttcagtctcatttattaatctttcataaaaaaaaaaatacataacacccaccaccc 9293500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 205 - 279
Target Start/End: Original strand, 31174685 - 31174758
Alignment:
Q  205 cacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    |||||||| | ||||||||||||  ||||||||||||||||||||||||| ||| |||||||||||| |||||||    
T  31174685 cacaataaactcctttagatttcaatctcatttattaatctttcataaaa-aaaaatacataacacccaccaccc 31174758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 43331131 - 43331053
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    |||| |||||||||||||||||||||| ||||||||||||  |||   | |||| ||| |||||||||||| |||||||    
T  43331131 atggtacaataatcacctttagatttcagtctcatttattcctctcataaaaaaaaaaaatacataacacccaccaccc 43331053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 16767312 - 16767361
Alignment:
Q  205 cacaataatcacctttagatttcggtctcatttattaatctttcataaaa 254  Q
    ||||||||||||  ||||||||| |||||||||||||| |||||||||||    
T  16767312 cacaataatcactcttagatttcagtctcatttattaacctttcataaaa 16767361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 279
Target Start/End: Complemental strand, 9723618 - 9723546
Alignment:
Q  208 aataatcacctttagatttcggtctcatttattaatctttcat-aaaagaaagatacataacaccgaccaccc 279  Q
    |||||||||||||||||||| |||| ||||||| |  |||||| |||| ||| |||||||||||| |||||||    
T  9723618 aataatcacctttagatttcagtcttatttattcacttttcataaaaaaaaaaatacataacacccaccaccc 9723546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 240
Target Start/End: Original strand, 34321003 - 34321042
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttatt 240  Q
    ||||||||||||||||| ||||||||| ||||||||||||    
T  34321003 atggcacaataatcacccttagatttcagtctcatttatt 34321042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 8e-30; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 36966554 - 36966632
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  36966554 atggcacaataatcacctttagatttcagtctcatttattaatctttcataaaaaaaagatacataacacccaccaccc 36966632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 51737724 - 51737646
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  51737724 atggcacaataatcacctttagatttcagtctcatttattaatctttcataaaaaaaagatacataacacccaccaccc 51737646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 204 - 279
Target Start/End: Original strand, 41876291 - 41876366
Alignment:
Q  204 gcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  41876291 gcacaataatcacctttagatttcagtctcatttattaatctttcataaaaaaaagatacataacacccaccaccc 41876366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 19015623 - 19015545
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||| |||||||    
T  19015623 atggcacaataatcacctttagatttcagtctcatttattaatctttcatacaaaaaagatacataacacccaccaccc 19015545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 6883706 - 6883628
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    |||||| |||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  6883706 atggcataatattcacctttagatttcagtctcatttattaatctttcataaaaaaaagatacataacacccaccaccc 6883628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 25463895 - 25463817
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||| |||||||||||| |||||||    
T  25463895 atggcacaataatcacctttagatttaagtctcatttattaatctttcataaaaaaaaaatacataacacccaccaccc 25463817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 205 - 271
Target Start/End: Original strand, 37821684 - 37821750
Alignment:
Q  205 cacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacacc 271  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  37821684 cacaataatcacctttagatttcagtctcatttattaatctttcataaaaaaaagatacataacacc 37821750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 40215207 - 40215129
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||| |||||||||||| |||||||    
T  40215207 atggcacaataatcacctttagatttcagtctcatttattaatatttcataaaaaaaaaatacataacacccaccaccc 40215129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 205 - 279
Target Start/End: Complemental strand, 44094912 - 44094839
Alignment:
Q  205 cacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||| |||||||    
T  44094912 cacaataatcacctttagatttcagtctcatttattaatctttcat-aaagaaaaatacataacacccaccaccc 44094839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 201 - 276
Target Start/End: Original strand, 20304976 - 20305052
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcat-aaaagaaagatacataacaccgacca 276  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||| |||| ||| |||||||||||| ||||    
T  20304976 atggcacaataatcacctttagatttcagtctcatttatcaatctttcataaaaaaaaaaatacataacacccacca 20305052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 205 - 279
Target Start/End: Complemental strand, 25973622 - 25973550
Alignment:
Q  205 cacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||  ||| |||||||||||| |||||||    
T  25973622 cacaataatcacctttaaatttcagtctcatttattaatctttcataaa--aaaaatacataacacccaccaccc 25973550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 9910137 - 9910217
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcat--aaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||||||||||||||||| | || |||||||||||||||||  |||| |||||| ||||||||| |||||||    
T  9910137 atggcacaataatcacctttagatttcagacttatttattaatctttcataaaaaaaaaagatgcataacacccaccaccc 9910217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 18404667 - 18404614
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaa 254  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  18404667 atggcacaataatcacatttagatttcagtctcatttattaatctttcataaaa 18404614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 205 - 279
Target Start/End: Complemental strand, 3559832 - 3559758
Alignment:
Q  205 cacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagataca-taacaccgaccaccc 279  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||| ||| ||||| ||||||| |||||||    
T  3559832 cacaataatcacctttatatttcagtctcatttattaatctttcataaaa-aaaaatacattaacacccaccaccc 3559758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 10167613 - 10167565
Alignment:
Q  206 acaataatcacctttagatttcggtctcatttattaatctttcataaaa 254  Q
    |||||||||||||||||||||| |||| |||||||||| ||||||||||    
T  10167613 acaataatcacctttagatttcagtcttatttattaatttttcataaaa 10167565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 32000112 - 32000191
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaa---gaaagatacataacaccgaccaccc 279  Q
    ||||||||||||||||| ||||||||| |||||||||||| |  ||||||||||    ||| |||||||||||| |||||||    
T  32000112 atggcacaataatcacccttagatttcagtctcatttattca--tttcataaaaaataaaaaatacataacacccaccaccc 32000191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 240
Target Start/End: Original strand, 33786477 - 33786516
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttatt 240  Q
    ||||||||||||||||| ||||||||| ||||||||||||    
T  33786477 atggcacaataatcacccttagatttcagtctcatttatt 33786516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 240
Target Start/End: Complemental strand, 40273927 - 40273888
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttatt 240  Q
    ||||||||||||||||| ||||||||| ||||||||||||    
T  40273927 atggcacaataatcacccttagatttcagtctcatttatt 40273888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 254
Target Start/End: Original strand, 44690868 - 44690921
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaa 254  Q
    |||||| |||||||||| ||||||| | |||| |||||||||||||| ||||||    
T  44690868 atggcagaataatcacccttagattccagtcttatttattaatcttttataaaa 44690921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 276
Target Start/End: Original strand, 22157391 - 22157459
Alignment:
Q  208 aataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgacca 276  Q
    |||||||||  ||| |||||  ||| |||||||||  |||||||||||||| |||||||||||| ||||    
T  22157391 aataatcacacttaaatttcaatcttatttattaacatttcataaaagaaaaatacataacacctacca 22157459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228 (Bit Score: 64; Significance: 5e-28; HSPs: 3)
Name: scaffold0228
Description:

Target: scaffold0228; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 201 - 276
Target Start/End: Complemental strand, 26155 - 26080
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgacca 276  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||    
T  26155 atggcacaataatcacctttagatttcagtctcatttattaatctttcataaaaaaaagatacataacacccacca 26080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 201 - 276
Target Start/End: Complemental strand, 16203 - 16128
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgacca 276  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||    
T  16203 atggcacaataatcatctttagatttcagtctcatttattaatctttcataaaaaaaagatacataacacccacca 16128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 217 - 276
Target Start/End: Complemental strand, 8605 - 8546
Alignment:
Q  217 ctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgacca 276  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||    
T  8605 ctttagatttcagtctcatttattaatctttcataaaaaaaagatacataacacccacca 8546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 4615 - 4537
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||| |||||||    
T  4615 atggcacaataatcacctttagatttcagtctcatttattaatctttcataaaaaacagatacataacacccaccaccc 4537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 201 - 283
Target Start/End: Original strand, 37216899 - 37216981
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccctatg 283  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||| |||||||||||    
T  37216899 atggtacaataatcacctttagatttcagtctcatttattaatctttcataaaaaaaaaatacataacacccaccaccctatg 37216981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 37522272 - 37522194
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  37522272 atggcataataatcacctttagatttcagtctcatttattaatctttcataaaaaaaagatacataacacccaccaccc 37522194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 201 - 276
Target Start/End: Original strand, 34482734 - 34482809
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgacca 276  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||| ||||    
T  34482734 atggcacaataatcacctttagatttcagtctcatttattaatctttcataaaaaaaagatacataatacccacca 34482809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 201 - 271
Target Start/End: Original strand, 3137260 - 3137330
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacacc 271  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||    
T  3137260 atggcacaataatcacctttagatttcagtctcatttattaatctttcatacaaaaaagatacataacacc 3137330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 205 - 279
Target Start/End: Original strand, 3574376 - 3574450
Alignment:
Q  205 cacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||| ||| |||||||||||| |||||||    
T  3574376 cacaataatcacctctagatttcagtctcatttattaatctttcataaaaaaaaaatacataacacccaccaccc 3574450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 205 - 279
Target Start/End: Original strand, 19650750 - 19650823
Alignment:
Q  205 cacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||| |||||||    
T  19650750 cacaataatcacctttagatttcagtctcatttattaatctttcataaaa-aaaaatacataacacccaccaccc 19650823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 22426191 - 22426268
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||| |||||||||||| |||||||    
T  22426191 atggcacaataatcacatttagatttcagtctcatttattaatctttcataaaa-aaaaatacataacacccaccaccc 22426268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 30385619 - 30385542
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| | | |||||||||||| |||||||    
T  30385619 atggcacaataatcacctttagatttcagtctcatttattaatctttcataaaa-ataaatacataacacccaccaccc 30385542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 201 - 271
Target Start/End: Original strand, 8320428 - 8320499
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcat-aaaagaaagatacataacacc 271  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||| ||||||||||||    
T  8320428 atggcacaataatcacctttagatttcagtctcatttattaatctttcataaaaaaaaaaatacataacacc 8320499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 33114013 - 33113934
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcat-aaaagaaagatacataacaccgaccaccc 279  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||| |||| ||| |||||||||||| |||||||    
T  33114013 atggcacaataatcacctttagatttcaatctcatttattaatctttcataaaaaaaaaaatacataacacccaccaccc 33113934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 205 - 279
Target Start/End: Complemental strand, 3456279 - 3456205
Alignment:
Q  205 cacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    |||| |||||| ||||||||||| |||||||||||||||||||||||||| ||| |||||||||||| |||||||    
T  3456279 cacactaatcatctttagatttcagtctcatttattaatctttcataaaaaaaaaatacataacacccaccaccc 3456205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 3089638 - 3089585
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaa 254  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3089638 atggcacaataatcacctttagatttcagtctcatttattaatctttcataaaa 3089585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 205 - 279
Target Start/End: Complemental strand, 48161121 - 48161046
Alignment:
Q  205 cacaataatcacctttagatttcggtctcatttattaatctttcat-aaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||| |||| ||| |||||||||||| |||||||    
T  48161121 cacaataatcacctttagatttcagtctcatttattaatttttcataaaaaaaaaaatacataacacccaccaccc 48161046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 2754938 - 2754885
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaa 254  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  2754938 atggcacaataatcacctttaaatttcagtctcatttattaatctttcataaaa 2754885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 6042096 - 6042043
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaa 254  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  6042096 atggcacaataatcacctttagatttcagtctcatttattaatttttcataaaa 6042043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 201 - 278
Target Start/End: Complemental strand, 26612965 - 26612891
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccacc 278  Q
    ||||||||||||||||| ||||||||| |||||||||||||| |||||||||   ||| |||||||||||| ||||||    
T  26612965 atggcacaataatcacccttagatttcagtctcatttattaacctttcataa---aaaaatacataacacccaccacc 26612891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 205 - 278
Target Start/End: Complemental strand, 33145927 - 33145854
Alignment:
Q  205 cacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccacc 278  Q
    ||||||||||||| ||||||||| |||| ||||||||| ||||||||||| ||| ||||||| |||| ||||||    
T  33145927 cacaataatcacccttagatttcagtcttatttattaacctttcataaaaaaaaaatacataccacccaccacc 33145854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 272
Target Start/End: Complemental strand, 42921344 - 42921273
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccg 272  Q
    ||||||||| ||||||| ||| ||||| |||||||||||||| ||||||||||| ||| |||||||| ||||    
T  42921344 atggcacaacaatcacccttaaatttcagtctcatttattaacctttcataaaaaaaaaatacataataccg 42921273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 47738330 - 47738277
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaa 254  Q
    ||||||||||||||| | ||||||||| |||||||||||||| |||||||||||    
T  47738330 atggcacaataatcatccttagatttcagtctcatttattaacctttcataaaa 47738277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 46919113 - 46919061
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaa 253  Q
    |||||| ||||||||||| ||||||||||||| |||||||||||| |||||||    
T  46919113 atggcagaataatcacctctagatttcggtcttatttattaatctatcataaa 46919061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 279
Target Start/End: Complemental strand, 11347476 - 11347409
Alignment:
Q  213 tcacctttagatttcggtctcatttattaatctttcat-aaaagaaagatacataacaccgaccaccc 279  Q
    |||||||||||||||  |||||||||||||| |||||| |||| ||| |||||||||||| |||||||    
T  11347476 tcacctttagatttcaatctcatttattaatttttcataaaaaaaaaaatacataacacccaccaccc 11347409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 279
Target Start/End: Complemental strand, 42298077 - 42298005
Alignment:
Q  205 cacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    |||||||| |||| ||||||||| |||||||||||||| ||||||||||  ||| |||||||||| | |||||||    
T  42298077 cacaataaccacccttagatttcagtctcatttattaacctttcataaa--aaaaatacataacatctaccaccc 42298005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 33839750 - 33839701
Alignment:
Q  205 cacaataatcacctttagatttcggtctcatttattaatctttcataaaa 254  Q
    ||||||||||||| ||| ||||| |||||||||||||| |||||||||||    
T  33839750 cacaataatcacccttaaatttcagtctcatttattaacctttcataaaa 33839701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 276
Target Start/End: Original strand, 36864883 - 36864952
Alignment:
Q  205 cacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgacca 276  Q
    ||||||||||||| ||||||||| ||||||||||||||  ||||||| |  ||| |||||||||||| ||||    
T  36864883 cacaataatcacccttagatttcagtctcatttattaacatttcatata--aaaaatacataacacccacca 36864952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 279
Target Start/End: Complemental strand, 24343760 - 24343688
Alignment:
Q  209 ataatcacctttagatttcggtctcatttattaatctttcataaaagaaaga--tacataacaccgaccaccc 279  Q
    ||||||||| ||||||||| |||| ||||||||| |||||| |||| ||| |  ||||||||||| |||||||    
T  24343760 ataatcacccttagatttcagtcttatttattaacctttcaaaaaaaaaaaaaatacataacacccaccaccc 24343688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 41224453 - 41224374
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcat---aaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||||||| ||| |||||  |||||||||||  ||||||||   |||| ||| |||||||||||| |||||||    
T  41224453 atggcacaataatcacccttaaatttcaatctcatttatt--tctttcataaaaaaaaaaaaatacataacacccaccaccc 41224374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 11840 - 11762
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||  |||||||    
T  11840 atggcacaataatcacctttagatttcagtctcatttattaatctttcataaaaaaaaaatacataacactcaccaccc 11762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 17175867 - 17175945
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||| |||||||    
T  17175867 atggtacaataatcacctttagatttcagtctcatttattaatctttcataaaaaaaaaatacataacacccaccaccc 17175945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 33696916 - 33696837
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaaga-tacataacaccgaccaccc 279  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| | ||||||||||| |||||||    
T  33696916 atggcacaataatcacctttagatttcagtctcatttattaatctttcataaaaaaaaaattacataacacccaccaccc 33696837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 18889490 - 18889567
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||| ||| |||||||    
T  18889490 atggcacaataatcacctttagatttcagtctcatttattaatctttcataaaa-aaaaatacataaaacccaccaccc 18889567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 205 - 279
Target Start/End: Complemental strand, 32702420 - 32702346
Alignment:
Q  205 cacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||| |||||||    
T  32702420 cacaataattacctttagatttcagtctcatttattaatctttcataaaaaaaagatacataagacccaccaccc 32702346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 6031586 - 6031665
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcat-aaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| || |||| ||| |||||||||||| |||||||    
T  6031586 atggcacaataatcacctttagatttcagtctcatttattaatcttttataaaaaaaaaaatacataacacccaccaccc 6031665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 6127496 - 6127417
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcata-aaagaaagatacataacaccgaccaccc 279  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||||| ||| ||| |||||||||||| |||||||    
T  6127496 atggcacaataatcacttttagatttcagtctcatttattaatctttcatataaaaaaaaatacataacacccaccaccc 6127417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 204 - 271
Target Start/End: Original strand, 18365423 - 18365489
Alignment:
Q  204 gcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacacc 271  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||    
T  18365423 gcacaataatcacctttagatttcagtctcatttattaatctttcataaaa-aaaaatacataacacc 18365489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 204 - 271
Target Start/End: Original strand, 18370687 - 18370753
Alignment:
Q  204 gcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacacc 271  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||    
T  18370687 gcacaataatcacctttagatttcagtctcatttattaatctttcataaaa-aaaaatacataacacc 18370753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 205 - 279
Target Start/End: Original strand, 33695176 - 33695251
Alignment:
Q  205 cacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaaga-tacataacaccgaccaccc 279  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| ||| | ||||||||||| |||||||    
T  33695176 cacaataatcacctttagatttcagtctcatttattaatctttcataaaaaaaaaattacataacacccaccaccc 33695251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 201 - 271
Target Start/End: Original strand, 2309269 - 2309339
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacacc 271  Q
    ||||||||||||||||| ||||||||| |||||||||||||| ||||||||||| ||| ||||||||||||    
T  2309269 atggcacaataatcacccttagatttcagtctcatttattaacctttcataaaaaaaaaatacataacacc 2309339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 201 - 260
Target Start/End: Original strand, 23290927 - 23290986
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaaga 260  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||    
T  23290927 atggcacaataattacctttagatttcagtctcatttattaatctttcataaaaaaaaga 23290986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 205 - 279
Target Start/End: Complemental strand, 28675363 - 28675289
Alignment:
Q  205 cacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||||||| ||||||||| |||||||||||||| ||||||||||  ||| ||||||||| || |||||||    
T  28675363 cacaataatcacccttagatttcagtctcatttattaacctttcataaataaaaaatacataacccccaccaccc 28675289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 279
Target Start/End: Complemental strand, 25987126 - 25987071
Alignment:
Q  224 tttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    |||| |||||||||| ||||||||||||||| |||||||||||||||| |||||||    
T  25987126 tttcagtctcatttactaatctttcataaaaaaaagatacataacacccaccaccc 25987071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 271
Target Start/End: Original strand, 11548435 - 11548505
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcat--aaaagaaagatacataacacc 271  Q
    ||||||||||||||||| ||||||||| ||||||||||||   |||||||  |||||||| ||||||||||||    
T  11548435 atggcacaataatcacccttagatttcagtctcatttatt--cctttcataaaaaagaaaaatacataacacc 11548505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 271
Target Start/End: Original strand, 9752109 - 9752161
Alignment:
Q  218 tttagatttcggtctcatttattaatctttcataaaagaaagatacataacacc 271  Q
    |||||||||| |||||||||||||| ||||||||||| ||| ||||||||||||    
T  9752109 tttagatttcagtctcatttattaacctttcataaaa-aaaaatacataacacc 9752161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 17705319 - 17705367
Alignment:
Q  205 cacaataatcacctttagatttcggtctcatttattaatctttcataaaa 254  Q
    ||||||||||||||| ||||||| |||||||||||||| |||||||||||    
T  17705319 cacaataatcacctt-agatttcagtctcatttattaacctttcataaaa 17705367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 205 - 279
Target Start/End: Complemental strand, 13057 - 12983
Alignment:
Q  205 cacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||| | |||||||    
T  13057 cacaataattacctttagatttcagtctcatttattaatctttcataaaaaaaagatacataacatccaccaccc 12983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 41229 - 41152
Alignment:
Q  201 atggcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||| |||||||    
T  41229 atggtacaataatcacctttagatttcagtctcatttattaatctttcataaaa-aaaaatacataacacccaccaccc 41152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 204 - 279
Target Start/End: Complemental strand, 48065 - 47991
Alignment:
Q  204 gcacaataatcacctttagatttcggtctcatttattaatctttcataaaagaaagatacataacaccgaccaccc 279  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||| | | |||||||||||| |||||||    
T  48065 gcacaataatcatctttagatttcagtctcatttattaatctttcataaaa-ataaatacataacacccaccaccc 47991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0665 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 231 - 283
Target Start/End: Complemental strand, 3252 - 3200
Alignment:
Q  231 ctcatttattaatctttcataaaagaaagatacataacaccgaccaccctatg 283  Q
    |||||||||||||||||||||||| ||| |||||||||||| |||||||||||    
T  3252 ctcatttattaatctttcataaaaaaaaaatacataacacccaccaccctatg 3200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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