View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0616_low_37 (Length: 277)

Name: NF0616_low_37
Description: NF0616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0616_low_37
NF0616_low_37
[»] chr2 (17 HSPs)
chr2 (40-261)||(17466843-17467062)
chr2 (178-261)||(31091542-31091629)
chr2 (178-261)||(32766254-32766341)
chr2 (208-261)||(39016398-39016451)
chr2 (176-261)||(17330245-17330334)
chr2 (178-261)||(24459461-24459548)
chr2 (178-260)||(40000350-40000436)
chr2 (178-256)||(5915012-5915094)
chr2 (199-261)||(14704048-14704114)
chr2 (194-260)||(32764975-32765045)
chr2 (178-238)||(11985712-11985772)
chr2 (176-261)||(34037688-34037777)
chr2 (189-261)||(2910132-2910208)
chr2 (193-261)||(7073675-7073747)
chr2 (189-253)||(31090196-31090264)
chr2 (189-251)||(39257044-39257106)
chr2 (208-261)||(31814359-31814416)
[»] chr5 (16 HSPs)
chr5 (175-261)||(16611746-16611836)
chr5 (189-261)||(8074483-8074559)
chr5 (189-261)||(4592893-4592969)
chr5 (176-261)||(19182969-19183058)
chr5 (178-261)||(28591129-28591216)
chr5 (178-260)||(25590452-25590537)
chr5 (189-261)||(546051-546127)
chr5 (180-261)||(9537046-9537130)
chr5 (178-261)||(9538064-9538151)
chr5 (160-235)||(21069291-21069367)
chr5 (178-261)||(2466789-2466876)
chr5 (178-261)||(18004659-18004746)
chr5 (178-235)||(18400211-18400268)
chr5 (180-261)||(14891162-14891243)
chr5 (195-261)||(19186235-19186305)
chr5 (160-227)||(13651173-13651240)
[»] chr8 (9 HSPs)
chr8 (160-261)||(5965457-5965563)
chr8 (150-263)||(41754808-41754925)
chr8 (189-261)||(35177427-35177503)
chr8 (178-261)||(32898460-32898547)
chr8 (178-261)||(35178819-35178906)
chr8 (180-260)||(30134589-30134673)
chr8 (178-235)||(28005364-28005421)
chr8 (178-235)||(28062667-28062724)
chr8 (186-235)||(41754027-41754076)
[»] chr1 (13 HSPs)
chr1 (189-261)||(52439511-52439583)
chr1 (178-261)||(5782435-5782522)
chr1 (178-261)||(7945569-7945656)
chr1 (189-261)||(32665785-32665861)
chr1 (160-261)||(10333201-10333307)
chr1 (209-261)||(22856732-22856788)
chr1 (190-261)||(52440574-52440649)
chr1 (178-260)||(6612440-6612526)
chr1 (196-261)||(9341040-9341109)
chr1 (180-261)||(32664536-32664612)
chr1 (160-262)||(3117651-3117758)
chr1 (189-238)||(44020018-44020067)
chr1 (208-261)||(6613994-6614051)
[»] chr6 (6 HSPs)
chr6 (160-260)||(31218957-31219062)
chr6 (186-261)||(30748028-30748107)
chr6 (178-261)||(31219175-31219262)
chr6 (160-229)||(23507951-23508020)
chr6 (178-238)||(12676512-12676572)
chr6 (160-235)||(29845483-29845559)
[»] chr7 (21 HSPs)
chr7 (178-261)||(7258296-7258383)
chr7 (178-261)||(35727720-35727807)
chr7 (178-257)||(44333160-44333243)
chr7 (178-260)||(8048800-8048886)
chr7 (178-261)||(8374935-8375022)
chr7 (178-261)||(10899088-10899175)
chr7 (186-261)||(48646078-48646157)
chr7 (176-260)||(42477400-42477487)
chr7 (160-261)||(48777258-48777364)
chr7 (160-261)||(48788687-48788793)
chr7 (157-261)||(43457456-43457565)
chr7 (182-261)||(48647458-48647541)
chr7 (193-261)||(8375598-8375670)
chr7 (179-238)||(34704931-34704990)
chr7 (178-260)||(46286524-46286610)
chr7 (208-261)||(33607638-33607695)
chr7 (189-261)||(7259699-7259775)
chr7 (194-261)||(12223714-12223785)
chr7 (186-261)||(13578335-13578414)
chr7 (210-261)||(44530626-44530681)
chr7 (195-261)||(30925023-30925093)
[»] chr3 (24 HSPs)
chr3 (188-261)||(45600954-45601030)
chr3 (160-261)||(17700520-17700626)
chr3 (189-261)||(11773066-11773142)
chr3 (178-261)||(47118066-47118153)
chr3 (178-261)||(48573006-48573093)
chr3 (178-261)||(33428450-33428537)
chr3 (160-261)||(17701934-17702040)
chr3 (192-261)||(2591662-2591735)
chr3 (178-261)||(19115162-19115248)
chr3 (184-261)||(36278979-36279060)
chr3 (196-261)||(36280332-36280401)
chr3 (178-229)||(19331129-19331180)
chr3 (189-235)||(2592052-2592098)
chr3 (178-261)||(19114554-19114641)
chr3 (189-261)||(55388105-55388181)
chr3 (162-260)||(3671043-3671145)
chr3 (179-261)||(20464091-20464177)
chr3 (178-260)||(34263826-34263912)
chr3 (178-235)||(52318362-52318419)
chr3 (189-261)||(52317011-52317087)
chr3 (194-261)||(49261552-49261620)
chr3 (160-232)||(47075399-47075472)
chr3 (186-235)||(47427889-47427938)
chr3 (208-261)||(48574474-48574531)
[»] chr4 (15 HSPs)
chr4 (178-261)||(4703232-4703319)
chr4 (178-261)||(53771064-53771151)
chr4 (180-260)||(54574448-54574532)
chr4 (181-235)||(31844746-31844800)
chr4 (178-261)||(47878499-47878586)
chr4 (160-261)||(47874566-47874672)
chr4 (178-261)||(39868943-39869028)
chr4 (178-257)||(53770354-53770437)
chr4 (178-238)||(19051273-19051333)
chr4 (217-261)||(19050298-19050346)
chr4 (209-261)||(26172957-26173013)
chr4 (182-261)||(4701790-4701873)
chr4 (160-228)||(39267724-39267792)
chr4 (170-258)||(39870692-39870785)
chr4 (179-235)||(44158526-44158582)
[»] scaffold0034 (1 HSPs)
scaffold0034 (189-261)||(116087-116163)
[»] scaffold0039 (3 HSPs)
scaffold0039 (178-235)||(79094-79151)
scaffold0039 (160-236)||(79727-79804)
scaffold0039 (178-235)||(74358-74415)
[»] scaffold0767 (1 HSPs)
scaffold0767 (186-261)||(5628-5707)
[»] scaffold0237 (1 HSPs)
scaffold0237 (160-235)||(1688-1764)


Alignment Details
Target: chr2 (Bit Score: 106; Significance: 4e-53; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 40 - 261
Target Start/End: Complemental strand, 17467062 - 17466843
Alignment:
Q  40 ttctcaagattgtttgtgagttttgtgaataagnnnnnnnnnaaatgacaaaaaagaaaagaaagaggagtccccacannnnnnnngtaaagaagaatct 139  Q
    |||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||| |||        |||||||||||||     
T  17467062 ttctcaagattgtttgtgagttttgtgaataagtttttttttaaatgacaaaaaagaaaagaaagaggagtccc-acattttttttgtaaagaagaatcc 17466964  T
Q  140 tctgctaatatatataaagaaaatagtcattttaatcttgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtct--- 236  Q
     ||||||||||||||||||||||| |||| |     ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||       
T  17466963 cctgctaatatatataaagaaaatggtcact-----cttgactctgcacctcgctgtcacataagccgctgactcaggattaaatacaaagaagtctctg 17466869  T
Q  237 -ctctgcacttccgttatcactttag 261  Q
     |||||||||||||||||||||||||    
T  17466868 actctgcacttccgttatcactttag 17466843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 31091629 - 31091542
Alignment:
Q  178 tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtc----tctctgcacttccgttatcactttag 261  Q
    ||||||| ||||| ||||||||||| ||| |||||||||||||||||||||| |||||     |||||||||||||||||||||||||    
T  31091629 tgactctgcaccttgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactctgcacttccgttatcactttag 31091542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 32766341 - 32766254
Alignment:
Q  178 tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtc----tctctgcacttccgttatcactttag 261  Q
    ||||||| ||||||| ||||||||| ||| |||||||||||||||||||||| |||||     |||||||||||||||||||||||||    
T  32766341 tgactctgcacctcgttgtcacataggtccctgactcaggattaaatacaaataagtccctgactctgcacttccgttatcactttag 32766254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 208 - 261
Target Start/End: Complemental strand, 39016451 - 39016398
Alignment:
Q  208 ctgactcaggattaaatacaaagaagtctctctgcacttccgttatcactttag 261  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  39016451 ctgactcaggattaaatacaaataagtcactctgcacttccgttatcactttag 39016398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 176 - 261
Target Start/End: Complemental strand, 17330334 - 17330245
Alignment:
Q  176 cttgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtct----ctctgcacttccgttatcactttag 261  Q
    ||||| ||| || ||| |||||||||| ||| |||||||||||||||||||||| ||||||    ||||||| |||||||||||||||||    
T  17330334 cttgattctgcagctcactgtcacataggtccctgactcaggattaaatacaaataagtctctgactctgcatttccgttatcactttag 17330245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 24459548 - 24459461
Alignment:
Q  178 tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtctct----ctgcacttccgttatcactttag 261  Q
    ||||||| || |||||||||||||| ||| |||| ||||||||||||||||| ||||||||    |||||||||  ||||||||||||    
T  24459548 tgactctgcatctcgctgtcacataggtccctgaatcaggattaaatacaaataagtctctgaccctgcacttctattatcactttag 24459461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 260
Target Start/End: Complemental strand, 40000436 - 40000350
Alignment:
Q  178 tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtctct----ctgcacttccgttatcacttta 260  Q
    ||||||| ||||||||||| |||||  || |||| | ||||||||||||||| ||||||||    ||||||||||||||||||||||    
T  40000436 tgactctgcacctcgctgttacatagatccctgattgaggattaaatacaaataagtctctaaccctgcacttccgttatcacttta 40000350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 256
Target Start/End: Complemental strand, 5915094 - 5915012
Alignment:
Q  178 tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtc----tctctgcacttccgttatcac 256  Q
    ||||||| ||||||||| ||| ||| |||  |||||||| ||||||||||||||||||     ||||||||||||||||||||    
T  5915094 tgactctgcacctcgctttcaaataggtctttgactcagaattaaatacaaagaagtcactaactctgcacttccgttatcac 5915012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 261
Target Start/End: Original strand, 14704048 - 14704114
Alignment:
Q  199 cataagtcgctgactcaggattaaatacaaagaag----tctctctgcacttccgttatcactttag 261  Q
    |||| ||| |||||||||||||||||||||| |||    || |||||||||||||||||||||||||    
T  14704048 cataggtccctgactcaggattaaatacaaataagtccctcactctgcacttccgttatcactttag 14704114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 32764975 - 32765045
Alignment:
Q  194 tgtcacataagtcgctgactcaggattaaatacaaagaagtc----tctctgcacttccgttatcacttta 260  Q
    ||||| ||| ||| |||||||||||||||||||||| |||||     ||||||||||||||||||||||||    
T  32764975 tgtcatataggtctctgactcaggattaaatacaaataagtccctgactctgcacttccgttatcacttta 32765045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 11985712 - 11985772
Alignment:
Q  178 tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtctct 238  Q
    |||||| |||||||||||| | | | ||| ||||||||||||||||||||||| |||||||    
T  11985712 tgactccacacctcgctgttataaaggtctctgactcaggattaaatacaaagtagtctct 11985772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 261
Target Start/End: Complemental strand, 34037777 - 34037688
Alignment:
Q  176 cttgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtct----ctctgcacttccgttatcactttag 261  Q
    ||||||||| ||||| ||||||| | | |||  | ||||||||||||||||||| ||||||    ||||||||||| |||||||||||||    
T  34037777 cttgactctgcaccttgctgtcataaaggtccataactcaggattaaatacaaataagtctatgactctgcacttctgttatcactttag 34037688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 261
Target Start/End: Original strand, 2910132 - 2910208
Alignment:
Q  189 ctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtct----ctctgcacttccgttatcactttag 261  Q
    ||||||||||||||  || ||||||| |||||||||||||| ||||||    |||||||||||| || |||||||||    
T  2910132 ctcgctgtcacatagatccctgactcgggattaaatacaaataagtctctgactctgcacttcctttgtcactttag 2910208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 261
Target Start/End: Original strand, 7073675 - 7073747
Alignment:
Q  193 ctgtcacataagtcgctgactcaggattaaatacaaagaagtctct----ctgcacttccgttatcactttag 261  Q
    ||||| |||| ||| |||| || |||||||||||||| ||||||||    |||||||||||||||||||||||    
T  7073675 ctgtcgcataggtctctgattcgggattaaatacaaataagtctctgattctgcacttccgttatcactttag 7073747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 253
Target Start/End: Original strand, 31090196 - 31090264
Alignment:
Q  189 ctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtct----ctctgcacttccgttat 253  Q
    |||||||||||||| |||  ||||||||||||||||| ||| ||||||    |||||||||||||||||    
T  31090196 ctcgctgtcacataggtccttgactcaggattaaatataaataagtctctgactctgcacttccgttat 31090264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 251
Target Start/End: Complemental strand, 39257106 - 39257044
Alignment:
Q  189 ctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtctctctgcacttccgtt 251  Q
    |||| ||||||||| ||| ||||||||| |||  |||||||||||||| | ||||||||||||    
T  39257106 ctcgttgtcacataggtctctgactcagtatttgatacaaagaagtctttgtgcacttccgtt 39257044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 261
Target Start/End: Complemental strand, 31814416 - 31814359
Alignment:
Q  208 ctgactcaggattaaatacaaagaagtct----ctctgcacttccgttatcactttag 261  Q
    ||||||||| |||||||| |||||||| |    |||||||||||||||||||||||||    
T  31814416 ctgactcagaattaaatataaagaagtttttgactctgcacttccgttatcactttag 31814359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 175 - 261
Target Start/End: Original strand, 16611746 - 16611836
Alignment:
Q  175 tcttgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtctctc----tgcacttccgttatcactttag 261  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||     ||||||||||||||||||||||    
T  16611746 tcttgactctacacctcgctgtcacataggtctctgactcaggattaaatacaaagaagcctctgattatgcacttccgttatcactttag 16611836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 189 - 261
Target Start/End: Original strand, 8074483 - 8074559
Alignment:
Q  189 ctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtc----tctctgcacttccgttatcactttag 261  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||     |||||||||||||||||||||||||    
T  8074483 ctcgctgtcacataagtccctgactcaggattaaatacaaataagtccctgactctgcacttccgttatcactttag 8074559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 189 - 261
Target Start/End: Original strand, 4592893 - 4592969
Alignment:
Q  189 ctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtc----tctctgcacttccgttatcactttag 261  Q
    |||||||||||||||||| |||||||| ||||||||||||| |||||     |||||||||||||||||||||||||    
T  4592893 ctcgctgtcacataagtccctgactcaagattaaatacaaataagtccctgactctgcacttccgttatcactttag 4592969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 176 - 261
Target Start/End: Original strand, 19182969 - 19183058
Alignment:
Q  176 cttgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagt--ct--ctctgcacttccgttatcactttag 261  Q
    ||||||| | ||||||||||||||||| ||| |||||||||||||||||||||| ||||  ||  |||| ||||||||||||||||||||    
T  19182969 cttgactttgcacctcgctgtcacataggtctctgactcaggattaaatacaaataagttcctgactctacacttccgttatcactttag 19183058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 28591216 - 28591129
Alignment:
Q  178 tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtc----tctctgcacttccgttatcactttag 261  Q
    ||||||| ||||||||||||||||| ||| |||||||||||||||||||||| || ||     |||||||||||| ||||||||||||    
T  28591216 tgactctgcacctcgctgtcacataggtccctgactcaggattaaatacaaataaatccctgactctgcacttcctttatcactttag 28591129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 178 - 260
Target Start/End: Original strand, 25590452 - 25590537
Alignment:
Q  178 tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtctc----tctgcacttccgttatcacttta 260  Q
    ||||||| ||||||||||||||||| ||| ||||||| |||||||||||||| |||||||    |||||||||| ||||||||||||    
T  25590452 tgactctgcacctcgctgtcacataggtccctgactc-ggattaaatacaaataagtctctgattctgcacttctgttatcacttta 25590537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 261
Target Start/End: Complemental strand, 546127 - 546051
Alignment:
Q  189 ctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtc----tctctgcacttccgttatcactttag 261  Q
    |||||||||||||| ||| |||||||||||||||||||| | |||||     |||||||||||||||||||||||||    
T  546127 ctcgctgtcacataggtccctgactcaggattaaatacagataagtccttgactctgcacttccgttatcactttag 546051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 261
Target Start/End: Original strand, 9537046 - 9537130
Alignment:
Q  180 actctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtc---tctctgcacttccgttatcactttag 261  Q
    ||||| ||||||||||||||||| ||| |||||| || ||||||||||||||||||    || ||||||||| ||||||||||||    
T  9537046 actctgcacctcgctgtcacataggtctctgacttagaattaaatacaaagaagtcatgactgtgcacttccattatcactttag 9537130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 9538151 - 9538064
Alignment:
Q  178 tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtctctc----tgcacttccgttatcactttag 261  Q
    ||||||| || |||| ||||| ||| ||| |||||||||||||||||||||||||||||||     |||||||||||||||| |||||    
T  9538151 tgactctgcatctcgttgtcatataggtccctgactcaggattaaatacaaagaagtctctgattgtgcacttccgttatcattttag 9538064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 21069291 - 21069367
Alignment:
Q  160 aaatagtcattttaatct-tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtc 235  Q
    ||||||||| |||| ||| ||||||| ||||||| ||||||| | ||| |||||||||||||||||||||| |||||    
T  21069291 aaatagtcactttagtctctgactctgcacctcgttgtcacagaggtctctgactcaggattaaatacaaataagtc 21069367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 2466876 - 2466789
Alignment:
Q  178 tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtc----tctctgcacttccgttatcactttag 261  Q
    ||||||| ||||||||| ||||||| |||  ||| ||||||||||||| ||| |||||     |||||||||||||||||||||||||    
T  2466876 tgactctgcacctcgctatcacataggtcattgattcaggattaaataaaaataagtccctaactctgcacttccgttatcactttag 2466789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 18004659 - 18004746
Alignment:
Q  178 tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtct----ctctgcacttccgttatcactttag 261  Q
    ||||||| |||||| |||||||| |||||  |  || ||||||||||||||||| ||||    |||||||||||||||||||||||||    
T  18004659 tgactctgcacctcactgtcacaaaagtctatagcttaggattaaatacaaagaggtctatgactctgcacttccgttatcactttag 18004746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 18400211 - 18400268
Alignment:
Q  178 tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtc 235  Q
    ||||||| |||||| |||||||||| |||  ||||||||||||||||| |||||||||    
T  18400211 tgactctgcacctcactgtcacataggtccttgactcaggattaaataaaaagaagtc 18400268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 261
Target Start/End: Complemental strand, 14891243 - 14891162
Alignment:
Q  180 actctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtctctctgcacttccgttatcactttag 261  Q
    ||||| ||||||||||||||||| ||| |||||||| |||||||| |||     |  |||| ||||||||||||||||||||    
T  14891243 actctgcacctcgctgtcacataggtctctgactcatgattaaatgcaagtctctgactctacacttccgttatcactttag 14891162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 261
Target Start/End: Complemental strand, 19186305 - 19186235
Alignment:
Q  195 gtcacataagtcgctgactcaggattaaatacaaagaagtct----ctctgcacttccgttatcactttag 261  Q
    |||||||| ||| |||||| ||||||||||||||| ||||||    |||| || |||||||||||||||||    
T  19186305 gtcacataggtccctgacttaggattaaatacaaacaagtctctgactctacatttccgttatcactttag 19186235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 13651240 - 13651173
Alignment:
Q  160 aaatagtcattttaatc-ttgactctacacctcgctgtcacataagtcgctgactcaggattaaataca 227  Q
    ||||||||| |||| || |||||| | ||||| ||||||||||| ||| ||||||||||||||||||||    
T  13651240 aaatagtcactttagtccttgactgtgcacct-gctgtcacataggtccctgactcaggattaaataca 13651173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 160 - 261
Target Start/End: Complemental strand, 5965563 - 5965457
Alignment:
Q  160 aaatagtcattttaatct-tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtct----ctctgcacttccgttatc 254  Q
    |||||||||||| | ||| ||| | ||||||||| ||||||| | ||| |||||||||||||||||||||||||||||    ||||||||||||||||||    
T  5965563 aaatagtcatttcagtctctgattttacacctcgttgtcacaaatgtccctgactcaggattaaatacaaagaagtctttgactctgcacttccgttatc 5965464  T
Q  255 actttag 261  Q
    |||||||    
T  5965463 actttag 5965457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 150 - 263
Target Start/End: Complemental strand, 41754925 - 41754808
Alignment:
Q  150 tatataaagaaaatagtcattttaatcttgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagt--ct--ctctgcact 245  Q
    |||||| || ||||||||| ||||||| ||| ||| |||||||||||||||||  || |||||||||||||||||||||| ||||  ||  |||| ||||    
T  41754925 tatatagagcaaatagtcactttaatcctgattctgcacctcgctgtcacatagatctctgactcaggattaaatacaaacaagttcctgactctacact 41754826  T
Q  246 tccgttatcactttagcc 263  Q
    |||||||| |||||||||    
T  41754825 tccgttattactttagcc 41754808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 261
Target Start/End: Original strand, 35177427 - 35177503
Alignment:
Q  189 ctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtc----tctctgcacttccgttatcactttag 261  Q
    |||||||||||||| ||| ||||||| |||||||||||||| |||||     |||||||||||||||||||||||||    
T  35177427 ctcgctgtcacataggtccctgactccggattaaatacaaataagtccctgactctgcacttccgttatcactttag 35177503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 32898547 - 32898460
Alignment:
Q  178 tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtc----tctctgcacttccgttatcactttag 261  Q
    ||||||| || ||| |||||||||| ||| |||||| ||||||||||||||| |||||     |||||||||||||||||||||||||    
T  32898547 tgactctgcaactcactgtcacataggtccctgacttaggattaaatacaaataagtccctgactctgcacttccgttatcactttag 32898460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 35178906 - 35178819
Alignment:
Q  178 tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtctc----tctgcacttccgttatcactttag 261  Q
    ||||||| ||| ||||||||| ||  ||| |||||||||||||||||||||| ||||| |    ||||||||||||||||||||||||    
T  35178906 tgactctgcacatcgctgtcatattggtccctgactcaggattaaatacaaataagtccctgattctgcacttccgttatcactttag 35178819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 260
Target Start/End: Original strand, 30134589 - 30134673
Alignment:
Q  180 actctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtct----ctctgcacttccgttatcacttta 260  Q
    ||||| ||||||||||||||| | ||| |  ||||| |||||||||||||||||| |    ||||||||||| ||||||||||||    
T  30134589 actctgcacctcgctgtcacaaaggtcccctactcatgattaaatacaaagaagtgtgtgactctgcacttctgttatcacttta 30134673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 28005364 - 28005421
Alignment:
Q  178 tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtc 235  Q
    ||||||||||||||| ||||||| |  || |||||||||||| |||||||||| ||||    
T  28005364 tgactctacacctcgttgtcacaaagatccctgactcaggatcaaatacaaagtagtc 28005421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 28062667 - 28062724
Alignment:
Q  178 tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtc 235  Q
    ||||||||||||||| ||||||| |  || |||||||||||| |||||||||| ||||    
T  28062667 tgactctacacctcgttgtcacaaagatccctgactcaggatcaaatacaaagtagtc 28062724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 41754027 - 41754076
Alignment:
Q  186 cacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtc 235  Q
    ||||| ||||||||||| ||| |||||||||||||||||| ||| |||||    
T  41754027 caccttgctgtcacataggtccctgactcaggattaaatataaacaagtc 41754076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 189 - 261
Target Start/End: Original strand, 52439511 - 52439583
Alignment:
Q  189 ctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtctctctgcacttccgttatcactttag 261  Q
    |||||||||||||| ||| ||| |||||||||||||||| | ||||||||||||| |||||||||||||||||    
T  52439511 ctcgctgtcacataggtctctggctcaggattaaatacagataagtctctctgcatttccgttatcactttag 52439583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 5782435 - 5782522
Alignment:
Q  178 tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtctctc----tgcacttccgttatcactttag 261  Q
    ||||||| ||||||||||||||||| ||| |||||||| ||||||||||||||||||||||     ||||||||| ||||||||||||    
T  5782435 tgactctgcacctcgctgtcacataggtctctgactcatgattaaatacaaagaagtctctgattatgcacttcccttatcactttag 5782522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 7945656 - 7945569
Alignment:
Q  178 tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtctctc----tgcacttccgttatcactttag 261  Q
    ||||||| ||||||||||||||||| ||  |||||||||||||||||||||| ||||||||     ||||||||||||||||||||||    
T  7945656 tgactctgcacctcgctgtcacataggttcctgactcaggattaaatacaaataagtctctgactatgcacttccgttatcactttag 7945569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 189 - 261
Target Start/End: Complemental strand, 32665861 - 32665785
Alignment:
Q  189 ctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtct----ctctgcacttccgttatcactttag 261  Q
    |||||||||||||| ||| |||||||| ||||||||||||| ||||||    |||||||||||||||||||||||||    
T  32665861 ctcgctgtcacataggtctctgactcatgattaaatacaaataagtctttgactctgcacttccgttatcactttag 32665785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 160 - 261
Target Start/End: Complemental strand, 10333307 - 10333201
Alignment:
Q  160 aaatagtcattttaatct-tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtct----ctctgcacttccgttatc 254  Q
    ||||||||| | |||||| ||| ||| || |||||||| ||||| ||| |||||||| ||||||||||||| ||||||    ||||||||||||||||||    
T  10333307 aaatagtcactataatctctgattctgcagctcgctgttacataggtctctgactcaagattaaatacaaataagtctctgactctgcacttccgttatc 10333208  T
Q  255 actttag 261  Q
    |||||||    
T  10333207 actttag 10333201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 22856732 - 22856788
Alignment:
Q  209 tgactcaggattaaatacaaagaagtct----ctctgcacttccgttatcactttag 261  Q
    ||||||||||||||||||||||||||||    |||||||||||||||||||||||||    
T  22856732 tgactcaggattaaatacaaagaagtctctaactctgcacttccgttatcactttag 22856788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 261
Target Start/End: Complemental strand, 52440649 - 52440574
Alignment:
Q  190 tcgctgtcacataagtcgctgactcaggattaaatacaaagaagtct----ctctgcacttccgttatcactttag 261  Q
    ||||||||||||| ||| |||| ||||||||||||| ||| ||||||    |||||||||||| ||||||||||||    
T  52440649 tcgctgtcacataggtccctgagtcaggattaaatataaataagtctctgactctgcacttccattatcactttag 52440574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 260
Target Start/End: Original strand, 6612440 - 6612526
Alignment:
Q  178 tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtct----ctctgcacttccgttatcacttta 260  Q
    ||||||| ||||||||||| | | | ||| |||||||| ||||||||||||| ||||||    |||||||||||| |||||||||||    
T  6612440 tgactctgcacctcgctgttataaatgtctctgactcatgattaaatacaaacaagtctctgactctgcacttccattatcacttta 6612526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 261
Target Start/End: Complemental strand, 9341109 - 9341040
Alignment:
Q  196 tcacataagtcgctgactcaggattaaatacaaagaagtctctc----tgcacttccgttatcactttag 261  Q
    ||||||| ||| |||||||||||||||||||||| ||||||||     |||||||| |||||||||||||    
T  9341109 tcacataggtccctgactcaggattaaatacaaataagtctctgactttgcacttctgttatcactttag 9341040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 261
Target Start/End: Original strand, 32664536 - 32664612
Alignment:
Q  180 actctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtctctctgcacttccgttatcactttag 261  Q
    ||||| ||||||||||| | ||| |||  ||||||||||||||||||||| ||    |||||||||||||||||||||||||    
T  32664536 actctgcacctcgctgttatataggtct-tgactcaggattaaatacaaataa----ctctgcacttccgttatcactttag 32664612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 262
Target Start/End: Original strand, 3117651 - 3117758
Alignment:
Q  160 aaatagtcattttaatct-tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtct----ctctgcacttccgttatc 254  Q
    |||||||||||||| ||  | ||||| ||| ||| | ||||| | ||| |||||||| |||||||||||||||| |||    |||| |||||||||||||    
T  3117651 aaatagtcattttagtccctaactcttcacatcgttatcacaaaggtctctgactcaagattaaatacaaagaaatctctgactctccacttccgttatc 3117750  T
Q  255 actttagc 262  Q
    ||||||||    
T  3117751 actttagc 3117758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 44020018 - 44020067
Alignment:
Q  189 ctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtctct 238  Q
    |||| ||||||| ||||| |||||||| ||||||||| ||||||||||||    
T  44020018 ctcgttgtcacaaaagtctctgactcaagattaaatataaagaagtctct 44020067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 261
Target Start/End: Complemental strand, 6614051 - 6613994
Alignment:
Q  208 ctgactcaggattaaatacaaagaagtct----ctctgcacttccgttatcactttag 261  Q
    |||||||||||||||||||||| ||||||    ||||||||||| ||||||| |||||    
T  6614051 ctgactcaggattaaatacaaataagtctctgactctgcacttcagttatcattttag 6613994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 260
Target Start/End: Original strand, 31218957 - 31219062
Alignment:
Q  160 aaatagtcattttaatct-tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagt--ct--ctctgcacttccgttatc 254  Q
    |||| |||| |||||||| ||||||| ||||||||||||||||| |||  | ||||||||||||||||||||||||  ||  ||||||||||||||||||    
T  31218957 aaatggtcactttaatctctgactctgcacctcgctgtcacataggtccttaactcaggattaaatacaaagaagttcctgactctgcacttccgttatc 31219056  T
Q  255 acttta 260  Q
    ||||||    
T  31219057 acttta 31219062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 261
Target Start/End: Original strand, 30748028 - 30748107
Alignment:
Q  186 cacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtct----ctctgcacttccgttatcactttag 261  Q
    ||||||||||||||||| ||| |||||| ||||||||||||||| ||||||    |||| ||||| ||||||||||||||    
T  30748028 cacctcgctgtcacataggtccctgacttaggattaaatacaaacaagtctctgactctacactttcgttatcactttag 30748107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 31219262 - 31219175
Alignment:
Q  178 tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagt--ct--ctctgcacttccgttatcactttag 261  Q
    ||||||| ||||||||||||||||| |||  | ||||||||||||||||||||||||  ||  |||  ||||||||||||||||||||    
T  31219262 tgactctgcacctcgctgtcacataggtcattaactcaggattaaatacaaagaagttcctgactcgacacttccgttatcactttag 31219175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 23507951 - 23508020
Alignment:
Q  160 aaatagtcattttaatcttgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaa 229  Q
    ||||||||| |||| |||   ||||||||||| |||||||||| ||  |||| |||||||||||||||||    
T  23507951 aaatagtcactttagtctctgctctacacctccctgtcacataggttcctgattcaggattaaatacaaa 23508020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 12676572 - 12676512
Alignment:
Q  178 tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtctct 238  Q
    ||||||| ||||||| |||||||   ||| ||| ||||||||||||||||||| |||||||    
T  12676572 tgactctgcacctcgttgtcacaatggtctctgtctcaggattaaatacaaagtagtctct 12676512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 29845483 - 29845559
Alignment:
Q  160 aaatagtcattttaatc-ttgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtc 235  Q
    ||||||||| ||||||| |||||||   |||||||||||||| ||||| || |||| ||| ||||||||||| ||||    
T  29845483 aaatagtcactttaatccttgactcagaacctcgctgtcacaaaagtctctaactcgggaataaatacaaagtagtc 29845559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 7258296 - 7258383
Alignment:
Q  178 tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtct----ctctgcacttccgttatcactttag 261  Q
    ||||||||||||||| ||||||||| ||| || ||||||||||||||||||| ||||||    ||||||||||| |||||||||||||    
T  7258296 tgactctacacctcgttgtcacataggtccctaactcaggattaaatacaaataagtctctgactctgcacttctgttatcactttag 7258383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 35727720 - 35727807
Alignment:
Q  178 tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtct----ctctgcacttccgttatcactttag 261  Q
    ||||||| ||||||||||||||||| ||| |||||||||||||||||| ||| ||||||    |||||||| ||||||||||||||||    
T  35727720 tgactctgcacctcgctgtcacataggtccctgactcaggattaaatataaataagtctctgactctgcacatccgttatcactttag 35727807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 178 - 257
Target Start/End: Original strand, 44333160 - 44333243
Alignment:
Q  178 tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtct----ctctgcacttccgttatcact 257  Q
    ||||||| ||||||||||||||||| ||| |||||||| ||||||||||||| ||||||    |||||||||||||||||||||    
T  44333160 tgactctgcacctcgctgtcacataggtccctgactcatgattaaatacaaataagtctctgactctgcacttccgttatcact 44333243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 178 - 260
Target Start/End: Complemental strand, 8048886 - 8048800
Alignment:
Q  178 tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtct----ctctgcacttccgttatcacttta 260  Q
    ||||||| |||||||||| |||| | ||| |||||||| ||||||||||||||||||||    ||||||||||||||||||||||||    
T  8048886 tgactctgcacctcgctgacacaaaggtctctgactcaagattaaatacaaagaagtctccgactctgcacttccgttatcacttta 8048800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 8374935 - 8375022
Alignment:
Q  178 tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtctc----tctgcacttccgttatcactttag 261  Q
    ||||||| ||||||||||||||||| ||| ||||||||| |||||||||||| |||| ||    | ||||||||||||||||||||||    
T  8374935 tgactctgcacctcgctgtcacataggtctctgactcagaattaaatacaaaaaagtttctgattttgcacttccgttatcactttag 8375022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 10899175 - 10899088
Alignment:
Q  178 tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtct----ctctgcacttccgttatcactttag 261  Q
    ||||||| |||||||||||||||||  ||  |||| |||||||||||||||| ||||||    |||||||||||||||||||||||||    
T  10899175 tgactctgcacctcgctgtcacatagatccttgacccaggattaaatacaaataagtctctgactctgcacttccgttatcactttag 10899088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 261
Target Start/End: Original strand, 48646078 - 48646157
Alignment:
Q  186 cacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtc----tctctgcacttccgttatcactttag 261  Q
    ||||||||||||||||| ||| |||||||||||||||||||||| |||||     |||| ||||||||||||||||||||    
T  48646078 cacctcgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactctacacttccgttatcactttag 48646157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 176 - 260
Target Start/End: Original strand, 42477400 - 42477487
Alignment:
Q  176 cttgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtc---tctctgcacttccgttatcacttta 260  Q
    ||||||||| ||||||| |||| |||| ||| |||||||||||||||||||||| |||||    ||||||||||||||||||| ||||    
T  42477400 cttgactctgcacctcgttgtcgcataggtctctgactcaggattaaatacaaataagtcctgactctgcacttccgttatcatttta 42477487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 160 - 261
Target Start/End: Original strand, 48777258 - 48777364
Alignment:
Q  160 aaatagtcattttaatct-tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtc----tctctgcacttccgttatc 254  Q
    ||||||||| |||| ||| ||| ||| || |||||||||||||||||| |||||||| ||||||||||||| || ||     ||||||||||||||||||    
T  48777258 aaatagtcactttagtctctgattctgcagctcgctgtcacataagtccctgactcatgattaaatacaaataattccctgactctgcacttccgttatc 48777357  T
Q  255 actttag 261  Q
    |||||||    
T  48777358 actttag 48777364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 160 - 261
Target Start/End: Complemental strand, 48788793 - 48788687
Alignment:
Q  160 aaatagtcattttaatc-ttgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtct----ctctgcacttccgttatc 254  Q
    ||||||||| ||| ||| |||||| | ||||||||||||||||| ||| ||||||||  |||||||| ||| ||||||    ||||||||||||||||||    
T  48788793 aaatagtcactttgatccttgactttgcacctcgctgtcacataggtccctgactcataattaaatataaataagtctctgactctgcacttccgttatc 48788694  T
Q  255 actttag 261  Q
    |||||||    
T  48788693 actttag 48788687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 261
Target Start/End: Original strand, 43457456 - 43457565
Alignment:
Q  157 agaaaatagtcattttaatct-tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtc----tctctgcacttccgtt 251  Q
    |||||||||||| |||| ||  ||| ||| || ||||||||| |||| ||| |||||||||||||||||||||| |||||     |||||||||||||||    
T  43457456 agaaaatagtcactttagtccctgattctgcagctcgctgtcgcataggtccctgactcaggattaaatacaaataagtccccgactctgcacttccgtt 43457555  T
Q  252 atcactttag 261  Q
    ||||||||||    
T  43457556 atcactttag 43457565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 261
Target Start/End: Complemental strand, 48647541 - 48647458
Alignment:
Q  182 tctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtct----ctctgcacttccgttatcactttag 261  Q
    |||||| |||||| ||||||| ||| |||||||||||||||||||||| ||||||    ||||||||||  |||||||||||||    
T  48647541 tctacagctcgctatcacataggtccctgactcaggattaaatacaaataagtctctcactctgcacttttgttatcactttag 48647458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 261
Target Start/End: Complemental strand, 8375670 - 8375598
Alignment:
Q  193 ctgtcacataagtcgctgactcaggattaaatacaaagaagtct----ctctgcacttccgttatcactttag 261  Q
    |||||||||| ||| |||||||| |||||||||||||||||| |    ||||||||||||||||||| |||||    
T  8375670 ctgtcacataggtccctgactcatgattaaatacaaagaagtttctgactctgcacttccgttatcaatttag 8375598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 34704931 - 34704990
Alignment:
Q  179 gactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtctct 238  Q
    |||||| ||||||| ||||||| | | | |||||||||||||||||||||||||||||||    
T  34704931 gactctgcacctcgttgtcacaaaggcctctgactcaggattaaatacaaagaagtctct 34704990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 260
Target Start/End: Original strand, 46286524 - 46286610
Alignment:
Q  178 tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtct----ctctgcacttccgttatcacttta 260  Q
    ||||||| || |||||||| | | | ||| |||||||||||||||||||||| ||||||    ||||||||||| ||||||||||||    
T  46286524 tgactcttcatctcgctgttagaaaggtccctgactcaggattaaatacaaataagtctctgactctgcacttctgttatcacttta 46286610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 261
Target Start/End: Complemental strand, 33607695 - 33607638
Alignment:
Q  208 ctgactcaggattaaatacaaagaagtctc----tctgcacttccgttatcactttag 261  Q
    |||| |||||||||||||||||||||||||    |||||||||||||||||| |||||    
T  33607695 ctgattcaggattaaatacaaagaagtctctgattctgcacttccgttatcattttag 33607638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 261
Target Start/End: Complemental strand, 7259775 - 7259699
Alignment:
Q  189 ctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtc----tctctgcacttccgttatcactttag 261  Q
    |||||||||||||  ||| |||| ||||||||||||||||| |||||     |||| ||||||||||||||||||||    
T  7259775 ctcgctgtcacatgggtctctgattcaggattaaatacaaataagtccctgactctacacttccgttatcactttag 7259699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 261
Target Start/End: Complemental strand, 12223785 - 12223714
Alignment:
Q  194 tgtcacataagtcgctgactcaggattaaatacaaagaagtc----tctctgcacttccgttatcactttag 261  Q
    ||||||||| ||| |||||||||||||||||| |||||||||     ||||||| ||||||||| |||||||    
T  12223785 tgtcacataggtccctgactcaggattaaatataaagaagtccctgactctgcagttccgttattactttag 12223714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 261
Target Start/End: Complemental strand, 13578414 - 13578335
Alignment:
Q  186 cacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtc----tctctgcacttccgttatcactttag 261  Q
    ||||||||||||| | |  || ||||||||| |||||||||||| |||||     |||||||||||||||||||||||||    
T  13578414 cacctcgctgtcataaagatcactgactcagaattaaatacaaataagtcactgactctgcacttccgttatcactttag 13578335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 261
Target Start/End: Complemental strand, 44530681 - 44530626
Alignment:
Q  210 gactcaggattaaatacaaagaagtctct----ctgcacttccgttatcactttag 261  Q
    |||||||||||||||| ||| ||||||||    |||||||||||||||||||||||    
T  44530681 gactcaggattaaatataaataagtctctgactctgcacttccgttatcactttag 44530626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 261
Target Start/End: Complemental strand, 30925093 - 30925023
Alignment:
Q  195 gtcacataagtcgctgactcaggattaaatacaaagaagtctctc----tgcacttccgttatcactttag 261  Q
    |||||||| |||  ||||||||||||||||||||| ||||||||     |||||||||||||| |||||||    
T  30925093 gtcacataggtccttgactcaggattaaatacaaataagtctctgactatgcacttccgttattactttag 30925023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 188 - 261
Target Start/End: Complemental strand, 45601030 - 45600954
Alignment:
Q  188 cctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtc---tctctgcacttccgttatcactttag 261  Q
    ||||||||||||||| ||| |||| |||||||||||||||||||||||    |||||||||||||||||||||||||    
T  45601030 cctcgctgtcacataggtccctgattcaggattaaatacaaagaagtcctgactctgcacttccgttatcactttag 45600954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 160 - 261
Target Start/End: Original strand, 17700520 - 17700626
Alignment:
Q  160 aaatagtcattttaatctt-gactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtc----tctctgcacttccgttatc 254  Q
    ||||||||| |||| |||| |||||| ||||||| ||||||||| ||  |||||||||||||||||||||| |||||     ||||||||||||||||||    
T  17700520 aaatagtcactttagtctttgactctgcacctcgttgtcacataggttcctgactcaggattaaatacaaataagtccctgactctgcacttccgttatc 17700619  T
Q  255 actttag 261  Q
    |||||||    
T  17700620 actttag 17700626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 189 - 261
Target Start/End: Complemental strand, 11773142 - 11773066
Alignment:
Q  189 ctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtct----ctctgcacttccgttatcactttag 261  Q
    |||||||||||||| ||| |||||||||||||||||||||| ||||||    |||| ||||||||||||||||||||    
T  11773142 ctcgctgtcacataggtccctgactcaggattaaatacaaataagtctctgactctacacttccgttatcactttag 11773066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 47118153 - 47118066
Alignment:
Q  178 tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtct----ctctgcacttccgttatcactttag 261  Q
    ||||||| ||||||| ||||| ||||||| | ||||||||||||||| |||||||||||    |||||||||| ||||||||||||||    
T  47118153 tgactctgcacctcgttgtcatataagtccccgactcaggattaaatgcaaagaagtctctgactctgcactttcgttatcactttag 47118066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 48573006 - 48573093
Alignment:
Q  178 tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtct----ctctgcacttccgttatcactttag 261  Q
    ||||||| ||||||| | ||||||| ||| |||||||||||||||||||||| ||| ||    |||||||||||||||||||||||||    
T  48573006 tgactctgcacctcgttatcacataggtccctgactcaggattaaatacaaataagcctctgactctgcacttccgttatcactttag 48573093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 33428537 - 33428450
Alignment:
Q  178 tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtc----tctctgcacttccgttatcactttag 261  Q
    ||||||| ||||||| ||||||||| ||| ||||||||| ||||||||||||||||||     ||||||| ||||||| |||||||||    
T  33428537 tgactctgcacctcgttgtcacataggtccctgactcagaattaaatacaaagaagtccttgactctgcatttccgttgtcactttag 33428450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 261
Target Start/End: Complemental strand, 17702040 - 17701934
Alignment:
Q  160 aaatagtcattttaatct-tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtc----tctctgcacttccgttatc 254  Q
    ||||||||| |||| ||| ||| ||| || |||||||||| ||| ||| |||||||| ||||||||||||| |||||     ||||||||||||||||||    
T  17702040 aaatagtcactttagtctctgattctgcagctcgctgtcatataggtccctgactcaagattaaatacaaataagtccctgactctgcacttccgttatc 17701941  T
Q  255 actttag 261  Q
    |||||||    
T  17701940 actttag 17701934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 261
Target Start/End: Original strand, 2591662 - 2591735
Alignment:
Q  192 gctgtcacataagtcgctgactcaggattaaatacaaagaagtct----ctctgcacttccgttatcactttag 261  Q
    ||||||||||| ||| |||||||||||||||||||||| ||||||    |||||||||||| | ||||||||||    
T  2591662 gctgtcacataggtccctgactcaggattaaatacaaacaagtctctgactctgcacttccatgatcactttag 2591735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 19115248 - 19115162
Alignment:
Q  178 tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtc---tctctgcacttccgttatcactttag 261  Q
    ||||||| ||||||| ||||||||| |||  | |||||||||||||||||||||||||    ||||||||||||||| | |||||||    
T  19115248 tgactctgcacctcgatgtcacataggtccttcactcaggattaaatacaaagaagtcatgactctgcacttccgtttttactttag 19115162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 261
Target Start/End: Original strand, 36278979 - 36279060
Alignment:
Q  184 tacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtct----ctctgcacttccgttatcactttag 261  Q
    |||| |||| ||||||||| ||| |||| ||||||||||||||||| ||||||    ||||||||||||||||||| |||||    
T  36278979 tacagctcgttgtcacataggtccctgattcaggattaaatacaaataagtctctgactctgcacttccgttatcattttag 36279060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 261
Target Start/End: Complemental strand, 36280401 - 36280332
Alignment:
Q  196 tcacataagtcgctgactcaggattaaatacaaagaagtct----ctctgcacttccgttatcactttag 261  Q
    ||||||| ||| |||||||||||||||||| ||| ||||||    |||||||||||||||||||||||||    
T  36280401 tcacataggtctctgactcaggattaaatataaataagtctctgactctgcacttccgttatcactttag 36280332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 229
Target Start/End: Original strand, 19331129 - 19331180
Alignment:
Q  178 tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaa 229  Q
    ||||||| ||||| ||||||||||| ||| ||||||||||||||||||||||    
T  19331129 tgactctgcaccttgctgtcacataggtccctgactcaggattaaatacaaa 19331180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 235
Target Start/End: Complemental strand, 2592098 - 2592052
Alignment:
Q  189 ctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtc 235  Q
    |||||||||||||| ||| |||||||||||||||||||||| |||||    
T  2592098 ctcgctgtcacataggtccctgactcaggattaaatacaaataagtc 2592052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 19114554 - 19114641
Alignment:
Q  178 tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtc----tctctgcacttccgttatcactttag 261  Q
    ||||||| ||| ||| ||||||| | ||| |||||||| |||||||||||||||||||     || ||||||||||||||||||||||    
T  19114554 tgactctgcacttcgttgtcacagaggtccctgactcaagattaaatacaaagaagtcactaactttgcacttccgttatcactttag 19114641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 261
Target Start/End: Original strand, 55388105 - 55388181
Alignment:
Q  189 ctcgctgtcacataagtcgctgactcaggattaaatacaaagaagt--ct--ctctgcacttccgttatcactttag 261  Q
    |||||||||| ||| ||| |||||||||||||||||||||| ||||  ||  ||||||||| |||||||||||||||    
T  55388105 ctcgctgtcatataggtctctgactcaggattaaatacaaataagttactgactctgcactcccgttatcactttag 55388181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 260
Target Start/End: Original strand, 3671043 - 3671145
Alignment:
Q  162 atagtcattttaatcttgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtct----ctctgcacttccgttatcact 257  Q
    ||||||| ||||  ||||||| | |||||| || ||||| | ||| ||||||||| |||||||||||| ||||||    |||| ||||||||||||||||    
T  3671043 atagtcactttatccttgactttgcacctctctatcacaaaggtctctgactcagaattaaatacaaataagtctatgactctccacttccgttatcact 3671142  T
Q  258 tta 260  Q
    |||    
T  3671143 tta 3671145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 261
Target Start/End: Original strand, 20464091 - 20464177
Alignment:
Q  179 gactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtc----tctctgcacttccgttatcactttag 261  Q
    |||||| ||||||| ||||||| | ||| ||| |||| |||||||||||||||||||     ||||||||||| |||||||||||||    
T  20464091 gactctgcacctcgttgtcacaaaggtccctggctcatgattaaatacaaagaagtccctgactctgcacttctgttatcactttag 20464177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 260
Target Start/End: Original strand, 34263826 - 34263912
Alignment:
Q  178 tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtct----ctctgcacttccgttatcacttta 260  Q
    ||||||| ||||||||||||||| | |||  ||| ||||||||||||||||| ||||||    |||| ||||||| |||||||||||    
T  34263826 tgactctgcacctcgctgtcacagaggtccttgattcaggattaaatacaaataagtctctgactctacacttccattatcacttta 34263912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 235
Target Start/End: Complemental strand, 52318419 - 52318362
Alignment:
Q  178 tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtc 235  Q
    ||||||| ||| |||||||||||||  || |||||||||||||||||||||| |||||    
T  52318419 tgactctgcacttcgctgtcacatagatccctgactcaggattaaatacaaataagtc 52318362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 261
Target Start/End: Original strand, 52317011 - 52317087
Alignment:
Q  189 ctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtct----ctctgcacttccgttatcactttag 261  Q
    |||||||||| ||| ||| |||||||| ||||||||||||| ||||||    |||||||| |||||||||| |||||    
T  52317011 ctcgctgtcatataggtctctgactcatgattaaatacaaataagtctttaactctgcacctccgttatcattttag 52317087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 261
Target Start/End: Complemental strand, 49261620 - 49261552
Alignment:
Q  194 tgtcacataagtcgctgactcaggattaaatacaaagaagtct--ctctgcacttccgttatcactttag 261  Q
    ||||||||| ||| |||||||||||||||||||||||   |||  ||||||| |||||||||||||||||    
T  49261620 tgtcacataggtccctgactcaggattaaatacaaag-tctctaactctgcatttccgttatcactttag 49261552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 232
Target Start/End: Complemental strand, 47075472 - 47075399
Alignment:
Q  160 aaatagtcattttaatc-ttgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaa 232  Q
    |||| |||| ||||||| |||||||| ||||||| ||||||||| |||  | ||||| ||||||||||||||||    
T  47075472 aaatggtcactttaatccttgactctgcacctcgttgtcacataggtccgtcactcaagattaaatacaaagaa 47075399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 47427889 - 47427938
Alignment:
Q  186 cacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtc 235  Q
    ||||||||||||||||| |||  |||||||  ||||||||||||||||||    
T  47427889 cacctcgctgtcacataggtccttgactcaaaattaaatacaaagaagtc 47427938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 261
Target Start/End: Complemental strand, 48574531 - 48574474
Alignment:
Q  208 ctgactcaggattaaatacaaagaagtc----tctctgcacttccgttatcactttag 261  Q
    |||||||||||||||||||||| |||||     |||||||||| ||||||||||||||    
T  48574531 ctgactcaggattaaatacaaataagtccctgactctgcactttcgttatcactttag 48574474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 4703319 - 4703232
Alignment:
Q  178 tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtct----ctctgcacttccgttatcactttag 261  Q
    |||||||||| |||||||||||||| ||| || |||||| |||||||||||||||||||    || | ||||||||||||||||||||    
T  4703319 tgactctacatctcgctgtcacataggtccctaactcagaattaaatacaaagaagtctttgactgtacacttccgttatcactttag 4703232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 53771151 - 53771064
Alignment:
Q  178 tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaag----tctctctgcacttccgttatcactttag 261  Q
    ||||||| ||||||| ||||||||| ||| ||||||||| ||||||||||||||||    |  |||||||||||||||||||||||||    
T  53771151 tgactctgcacctcgttgtcacataggtccctgactcagaattaaatacaaagaagcccctgactctgcacttccgttatcactttag 53771064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 260
Target Start/End: Original strand, 54574448 - 54574532
Alignment:
Q  180 actctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagt-ct---ctctgcacttccgttatcacttta 260  Q
    ||||| || |||||||||||||| ||| |||||||||||||||||||||| |||| ||   ||||||||||||||||||||||||    
T  54574448 actctgcatctcgctgtcacataggtctctgactcaggattaaatacaaataagttcttaactctgcacttccgttatcacttta 54574532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 31844746 - 31844800
Alignment:
Q  181 ctctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtc 235  Q
    |||| ||||||||||||||||| ||| |||||||||||||||||||||| |||||    
T  31844746 ctctgcacctcgctgtcacataggtccctgactcaggattaaatacaaacaagtc 31844800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 47878586 - 47878499
Alignment:
Q  178 tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtc----tctctgcacttccgttatcactttag 261  Q
    ||||||| ||||||||||| ||||| ||| ||||||| |||||||||||||| |||||     |||| ||||||||||||||||||||    
T  47878586 tgactctgcacctcgctgttacataggtccctgactctggattaaatacaaataagtccctgactctacacttccgttatcactttag 47878499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 261
Target Start/End: Original strand, 47874566 - 47874672
Alignment:
Q  160 aaatagtcattttaatct-tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtctc----tctgcacttccgttatc 254  Q
    ||||||||| |||| ||| ||| ||| || |||||| ||||||| ||| |||||||| ||||||||||||| ||||| |    |||||||||||||||||    
T  47874566 aaatagtcactttagtctctgattctgcagctcgctatcacataggtccctgactcaagattaaatacaaataagtccctgattctgcacttccgttatc 47874665  T
Q  255 actttag 261  Q
    |||||||    
T  47874666 actttag 47874672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 39868943 - 39869028
Alignment:
Q  178 tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagt--ctctctgcacttccgttatcactttag 261  Q
    ||||||| ||||||||||| ||| | ||| ||||||||  |||||||||||| ||||    |||||||||||||||||||||||||    
T  39868943 tgactctgcacctcgctgttacaaaggtccctgactcataattaaatacaaacaagttcgactctgcacttccgttatcactttag 39869028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 257
Target Start/End: Original strand, 53770354 - 53770437
Alignment:
Q  178 tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtct----ctctgcacttccgttatcact 257  Q
    ||||||| ||||||||  ||||||| ||  ||||||||| |||||||||||||||||||    |||||||||||| ||||||||    
T  53770354 tgactctgcacctcgcattcacataggttcctgactcagaattaaatacaaagaagtctatgactctgcacttccattatcact 53770437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 19051333 - 19051273
Alignment:
Q  178 tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtctct 238  Q
    ||||||||||||||| || |||| | ||| |||||||  ||||||||||||||||||||||    
T  19051333 tgactctacacctcgttggcacaaaggtcactgactcgagattaaatacaaagaagtctct 19051273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 261
Target Start/End: Original strand, 19050298 - 19050346
Alignment:
Q  217 gattaaatacaaagaagtctc----tctgcacttccgttatcactttag 261  Q
    |||||||||||||||||||||    ||||||||||||||||||||||||    
T  19050298 gattaaatacaaagaagtctcggactctgcacttccgttatcactttag 19050346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 26173013 - 26172957
Alignment:
Q  209 tgactcaggattaaatacaaagaagtctct----ctgcacttccgttatcactttag 261  Q
    ||||||| ||||||||||||| ||||||||    |||||||||||||||||||||||    
T  26173013 tgactcaagattaaatacaaataagtctctgactctgcacttccgttatcactttag 26172957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 261
Target Start/End: Original strand, 4701790 - 4701873
Alignment:
Q  182 tctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtc----tctctgcacttccgttatcactttag 261  Q
    ||||||||||||||||||| | |||  ||||| | |||||||||||||||||||     || |||||||||| |||||||||||    
T  4701790 tctacacctcgctgtcacaaaggtctatgacttatgattaaatacaaagaagtccccgactatgcacttccgctatcactttag 4701873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 39267724 - 39267792
Alignment:
Q  160 aaatagtcattttaatcttgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaa 228  Q
    |||||||||||||| || ||||| | |||||||||||||| | |||||| || | ||||| ||||||||    
T  39267724 aaatagtcattttattcctgactttgcacctcgctgtcacttcagtcgccgattgaggataaaatacaa 39267792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 258
Target Start/End: Complemental strand, 39870785 - 39870692
Alignment:
Q  170 tttaatct-tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtc----tctctgcacttccgttatcactt 258  Q
    |||||||| ||||||| ||||||||||||||||||||  |||| ||| ||||||| ||| |||| ||     ||||||||||||| ||||||||    
T  39870785 tttaatctctgactctgcacctcgctgtcacataagttcctgagtcaagattaaacacagagaaatcactgactctgcacttccgatatcactt 39870692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 44158526 - 44158582
Alignment:
Q  179 gactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtc 235  Q
    |||||| ||||||| ||| ||| | ||  ||||||||||||||||||||||||||||    
T  44158526 gactctgcacctcgttgttacagaggttcctgactcaggattaaatacaaagaagtc 44158582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 261
Target Start/End: Original strand, 116087 - 116163
Alignment:
Q  189 ctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtc----tctctgcacttccgttatcactttag 261  Q
    |||||||||||||| ||| |||||||||||||||||||||| |||||     || ||||||||||||||||||||||    
T  116087 ctcgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactatgcacttccgttatcactttag 116163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 79094 - 79151
Alignment:
Q  178 tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtc 235  Q
    ||||||| ||||||||||||||||| |||  ||||||| ||||||||| |||||||||    
T  79094 tgactctgcacctcgctgtcacataggtccttgactcatgattaaataaaaagaagtc 79151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 236
Target Start/End: Complemental strand, 79804 - 79727
Alignment:
Q  160 aaatagtcattttaatct-tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtct 236  Q
    ||||||||| |||||||  ||||||  ||||||| ||| ||||||||  |||||||| ||||||||||||||||||||    
T  79804 aaatagtcactttaatccctgactcggcacctcgttgttacataagttcctgactcatgattaaatacaaagaagtct 79727  T

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Target: scaffold0039; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 235
Target Start/End: Complemental strand, 74415 - 74358
Alignment:
Q  178 tgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtc 235  Q
    ||||||| || ||| |||||||||| ||| || ||||| |||||||||||||||||||    
T  74415 tgactctgcaactcactgtcacataggtccctaactcatgattaaatacaaagaagtc 74358  T

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Target: scaffold0767 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 261
Target Start/End: Original strand, 5628 - 5707
Alignment:
Q  186 cacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtc----tctctgcacttccgttatcactttag 261  Q
    ||||||| ||| ||| | ||| ||||||||| ||||||||||||||||||     |||| ||||||||||||||||||||    
T  5628 cacctcgttgtgacaaatgtctctgactcagaattaaatacaaagaagtccctgactctacacttccgttatcactttag 5707  T

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Target: scaffold0237 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 1688 - 1764
Alignment:
Q  160 aaatagtcattttaatc-ttgactctacacctcgctgtcacataagtcgctgactcaggattaaatacaaagaagtc 235  Q
    ||||||||| ||||||| |||||||   |||||||||||||| ||||| || |||| ||| ||||||||||| ||||    
T  1688 aaatagtcactttaatccttgactcagaacctcgctgtcacaaaagtctctaactcgggaataaatacaaagtagtc 1764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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