View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0616_low_38 (Length: 271)
Name: NF0616_low_38
Description: NF0616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0616_low_38 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 22 - 271
Target Start/End: Original strand, 35317106 - 35317355
Alignment:
| Q |
22 |
catcatcaataacaaaaacagtaacatcatcataaacacatgaaccaaacctctctctctttcaatccataaaaacatataaccctaaagaaacacaaca |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
35317106 |
catcatcaataacaaaaacagtaacatcatcataaacacatgaaccaaacctctctctctttcaatccataaaaacatataaccctaaacaaacacaaca |
35317205 |
T |
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| Q |
122 |
caatcatgtcccttgaagactcactaagatctctttctttagactacttaaaccttctcatcaacggacaagcgttcagcgacgttgttttcagcgtcga |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35317206 |
caatcatgtcccttgaagactcactaagatctctttctttagactacttaaaccttctcatcaacggacaagcgttcagcgacgttgttttcagcgtcga |
35317305 |
T |
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| Q |
222 |
aggacgtttagtccacgcacacagacgcatcttagcagcaagaagtctat |
271 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
35317306 |
aggacgtttagtccacgcacacagatgcatcttagcagcaagaagtctat |
35317355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 206
Target Start/End: Complemental strand, 19890100 - 19890020
Alignment:
| Q |
126 |
catgtcccttgaagactcactaagatctctttctttagactacttaaaccttctcatcaacggacaagcgttcagcgacgt |
206 |
Q |
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||||||||||||||| | ||||||||||| || | |||||| | || || ||||||||||| ||||| ||||||||||| |
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| T |
19890100 |
catgtcccttgaagagactctaagatctctctcccttgactacctgaatctcctcatcaacggccaagccttcagcgacgt |
19890020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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