View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0616_low_4 (Length: 750)
Name: NF0616_low_4
Description: NF0616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0616_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-117; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 438 - 741
Target Start/End: Complemental strand, 4337650 - 4337348
Alignment:
| Q |
438 |
cagaacagttcgtgcttactcaaattaaaacccccaggagttggctttgtggtctgaagacttgggatctaggagcgtgctcttctctaggtatcgaatt |
537 |
Q |
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| T |
4337650 |
cagaacaattcgtgcttactcaaattaaaacccctaggagttggctttgtggtgtgaagacttgggatctaggagcgtgctcttctctaggtatcgaatt |
4337551 |
T |
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| Q |
538 |
tgaattccccaagtaccaaaaattcttgtgttgggcccaatggagatacaaagctttgttcttgtagcaattggg-gcccccgctagtggttagtgggat |
636 |
Q |
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| T |
4337550 |
tgaattccccaagtaccaaaaattcttgtgttgggcc---gctccatacaaagctttgttctggtagcaattgggcccccccgctagtggttagtgggat |
4337454 |
T |
|
| Q |
637 |
ttat-cccccggattagttggtccttaggccggatatggagttttcaagagnnnnnnntcagctcaaattaaaatttacctggcaagtctttcacatctt |
735 |
Q |
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| T |
4337453 |
ttatccccccggattagttggtccttaggccggatatggagttttcaagagaaaaaaatcagctcaaattaaaatttacctggcaagtctttcacatctt |
4337354 |
T |
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| Q |
736 |
tcatct |
741 |
Q |
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|||||| |
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| T |
4337353 |
tcatct |
4337348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 198 - 444
Target Start/End: Original strand, 4132165 - 4132404
Alignment:
| Q |
198 |
ataaaacctgcaatccactgtcagaaactaaaattcaacaatctgccacaactaacagcaccaatacaaggtttatgggcaccatgacaatgaaatgcat |
297 |
Q |
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| T |
4132165 |
ataaaacctgcaattcacagtcggaagctataaatcatcaatcagccacaactagcagcaccgctacaaggtctataggcaccataagaatcaaattcat |
4132264 |
T |
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| Q |
298 |
aaacccccaaaa-gatctttgaaattgtagaaataaggaaaattcagagaagctctctttgaaatgatagaatgtcagtcattttagtccagaaagttat |
396 |
Q |
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| T |
4132265 |
aaatccccaaaatgatctttaaaattgaagaaataaggaaaattcacagaagctctc--------aatagattgtctgtcattttagtccacaaagctat |
4132356 |
T |
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| Q |
397 |
ccttcgaatttctcttatttcaggggattaacctaacagcgcagaaca |
444 |
Q |
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| T |
4132357 |
cctttgaatttctcttatttctggagactaagctaacagcgcagaaca |
4132404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 180 - 354
Target Start/End: Original strand, 4318852 - 4319027
Alignment:
| Q |
180 |
gtagccacgaatctacacataaaacctgcaatccactgtcagaaactaaaattcaacaatctgccacaactaacagcaccaatacaaggtttatgggcac |
279 |
Q |
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| T |
4318852 |
gtagccaccaatgtaagcataaaatctgcaatccactttcataaactataattcaccaatcagccacaactagcaacacctatacaaggtttacagagac |
4318951 |
T |
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| Q |
280 |
catgacaatgaaatgcataaacccccaaaa-gatctttgaaattgtagaaataaggaaaattcagagaagctctct |
354 |
Q |
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| T |
4318952 |
aatgagaattaaaggcacaaacccccaaaatgatctttgaaattaatgaaatatggaaaattcacagaagctctct |
4319027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 93 - 171
Target Start/End: Original strand, 4132017 - 4132095
Alignment:
| Q |
93 |
gtttccttatcttactccccttaaagcattaggatcagggcttcccaatctagttcaagctggacttctatgaaaccaa |
171 |
Q |
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| T |
4132017 |
gtttccttatcttattccccgtagagcattaggatcagggcttcccaatcaagctcatgttggacttctgtgaaaccaa |
4132095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 174
Target Start/End: Original strand, 4318713 - 4318798
Alignment:
| Q |
89 |
atcagtttccttatcttactccccttaaagcattaggatcagggcttcccaatctagttcaagctggacttctatgaaaccaagat |
174 |
Q |
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| T |
4318713 |
atcagtttccttatcttactcccattaaagcattaggatccgagcttaccagtcaaactcaagttggatttctgtgaaaccaagat |
4318798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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