View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0616_low_43 (Length: 257)
Name: NF0616_low_43
Description: NF0616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0616_low_43 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 124; Significance: 7e-64; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 134 - 257
Target Start/End: Original strand, 33172820 - 33172943
Alignment:
| Q |
134 |
gtcttgcatgacttgagtccaagcttatgctcaaatcaagttatgtaaatggaaaattggaaccaaactaaatacatatatatagtactactagagaagg |
233 |
Q |
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| T |
33172820 |
gtcttgcatgacttgagtccaagcttatgctcaaatcaagttatgtaaatggaaaattggaaccaaactaaatacatatatatagtactactagagaagg |
33172919 |
T |
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| Q |
234 |
aagaatagagtaccaacctatata |
257 |
Q |
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| T |
33172920 |
aagaatagagtaccaacctatata |
33172943 |
T |
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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 69
Target Start/End: Original strand, 33172722 - 33172755
Alignment:
| Q |
36 |
aaaacaaatcaagagataaactaaccttatgaac |
69 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
33172722 |
aaaacaaatcaagagataaactaaccttatgaac |
33172755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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