View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0616_low_48 (Length: 248)
Name: NF0616_low_48
Description: NF0616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0616_low_48 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 23 - 239
Target Start/End: Complemental strand, 34176265 - 34176049
Alignment:
| Q |
23 |
tcatgcttggtatggaggtgaaggatgatgagctcgtgtacatgctaatggaaggtgatttggatggagatggtgctttaaatccaatggagttttgcat |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34176265 |
tcatgcttggtatggaggtgaaggatgatgagctcgtgtacatgctaatggaaggtgatttggatggagatggtgctttaaatccaatggagttttgcat |
34176166 |
T |
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| Q |
123 |
tctcatgtttaggttgagtccatgtttaatggatggacctaaaatgtgcacaaatcctcaaggtgtgaatccaatgttaatgtgatcacactcttctatc |
222 |
Q |
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||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34176165 |
tcttatgtttaggttgagtccatgtttaatggaaggacctaaaatgtgcacaaatcctcaaggtgtgaatccaatgttaatgtgatgacactcttctatc |
34176066 |
T |
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| Q |
223 |
taactctcttctctgct |
239 |
Q |
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|||||||||| |||||| |
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| T |
34176065 |
taactctcttttctgct |
34176049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 23 - 227
Target Start/End: Complemental strand, 34144144 - 34143940
Alignment:
| Q |
23 |
tcatgcttggtatggaggtgaaggatgatgagctcgtgtacatgctaatggaaggtgatttggatggagatggtgctttaaatccaatggagttttgcat |
122 |
Q |
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|||||||||| ||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34144144 |
tcatgcttggcttggaggtgagggacgaagagctcgtgtacatgctaatggaaggtgatttggatggagatggtgctttaaatcaaatggagttttgcat |
34144045 |
T |
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| Q |
123 |
tctcatgtttaggttgagtccatgtttaatggatggacctaaaatgtgcacaaatcctcaaggtgtgaatccaatgttaatgtgatcacactcttctatc |
222 |
Q |
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| T |
34144044 |
tctcatgtttaggttgagtccatgtttaatggatggacctaaaatatacactactcatcaaggtgtggatccaatgttaatgtgatgacactcttctatc |
34143945 |
T |
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| Q |
223 |
taact |
227 |
Q |
| |
|
||||| |
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| T |
34143944 |
taact |
34143940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 23 - 227
Target Start/End: Complemental strand, 34115050 - 34114846
Alignment:
| Q |
23 |
tcatgcttggtatggaggtgaaggatgatgagctcgtgtacatgctaatggaaggtgatttggatggagatggtgctttaaatccaatggagttttgcat |
122 |
Q |
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|||||||||| ||||||||| |||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34115050 |
tcatgcttggcttggaggtgagggatgaagaactcgtgtacatgctaatggagggtgatttggatggagatggtgctttaaatcaaatggagttttgcat |
34114951 |
T |
|
| Q |
123 |
tctcatgtttaggttgagtccatgtttaatggatggacctaaaatgtgcacaaatcctcaaggtgtgaatccaatgttaatgtgatcacactcttctatc |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | ||||||| || |||||||||| ||||||||||| ||| || ||||||||||| |
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| T |
34114950 |
tctcatgtttaggttgagtccatgtttaatggatggacctaaattatgcacaactcgtcaaggtgtggatccaatgttattgtaatacaactcttctatc |
34114851 |
T |
|
| Q |
223 |
taact |
227 |
Q |
| |
|
||||| |
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|
| T |
34114850 |
taact |
34114846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 143
Target Start/End: Original strand, 2766169 - 2766249
Alignment:
| Q |
63 |
catgctaatggaaggtgatttggatggagatggtgctttaaatccaatggagttttgcattctcatgtttaggttgagtcc |
143 |
Q |
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|||||||| ||||||||| | ||||| ||||| ||| | ||| ||||||||||||| |||||||||||||||||||| |
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| T |
2766169 |
catgctaagagaaggtgatattgatggggatggagctcttaatgagatggagttttgcaccctcatgtttaggttgagtcc |
2766249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 23630668 - 23630723
Alignment:
| Q |
64 |
atgctaatggaaggtgatttggatggagatggtgctttaaatccaatggagttttg |
119 |
Q |
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|||||||||||||||||||| ||||||||||||||| | || | |||||||||||| |
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| T |
23630668 |
atgctaatggaaggtgattttgatggagatggtgctcttaaccaaatggagttttg |
23630723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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