View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0616_low_6 (Length: 653)

Name: NF0616_low_6
Description: NF0616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0616_low_6
NF0616_low_6
[»] chr2 (3 HSPs)
chr2 (295-610)||(1231760-1232081)
chr2 (313-362)||(28197086-28197135)
chr2 (321-369)||(15639202-15639250)
[»] chr6 (3 HSPs)
chr6 (439-506)||(7313922-7313989)
chr6 (433-506)||(7308753-7308826)
chr6 (434-506)||(7324988-7325060)
[»] chr3 (5 HSPs)
chr3 (313-366)||(22859576-22859629)
chr3 (321-369)||(1714843-1714891)
chr3 (271-356)||(54744181-54744263)
chr3 (439-506)||(21334811-21334878)
chr3 (295-369)||(53665994-53666065)
[»] chr8 (2 HSPs)
chr8 (272-371)||(28462002-28462101)
chr8 (308-370)||(40873843-40873905)
[»] chr7 (2 HSPs)
chr7 (447-506)||(24453994-24454053)
chr7 (313-362)||(26383935-26383984)
[»] chr4 (1 HSPs)
chr4 (451-506)||(36681694-36681749)
[»] chr1 (2 HSPs)
chr1 (431-506)||(7064726-7064800)
chr1 (313-355)||(38746638-38746680)
[»] scaffold0263 (1 HSPs)
scaffold0263 (313-349)||(5032-5068)


Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 295 - 610
Target Start/End: Complemental strand, 1232081 - 1231760
Alignment:
Q  295 aagcaataacaacaagattgtaatgcaaaaccacaattgaatcaaagaacaacaagataaaagagtagtagagaatcaacacacaatattctttatcc-- 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||| |||||||      
T  1232081 aagcaataacaacaagattgtaatgcaaaaccacaattgaatcaaagaacaattagataaaagagcagtagagaatcaacacacaatattgtttatccag 1231982  T
Q  393 ----gtcaaaaaagacctactatagaggatagaacaactattcattccattaatcaagagagtaactttacgcagagattctaaaagaaattacaagaat 488  Q
        ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  1231981 tttggtcaaaaaagacctactatagaggatagaacaactatccattccactaatcaagagagtaactttacgcagagattccaaaagaaattacaggaat 1231882  T
Q  489 aaatcttcaaacctaattttannnnnnnaatacttggttatttcattcttaaataaaaacataattttctatcttttatttttcacatatcatcttgagc 588  Q
    |||| ||||||||||||| ||       ||||||| ||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||    
T  1231881 aaattttcaaacctaattctatttttttaatacttcgttatttcattcttaaataaaaaaatatttttctatcttttatttgtcacatatcatcttgagc 1231782  T
Q  589 acctatgatggagtttcacata 610  Q
    ||||||||||||||||||||||    
T  1231781 acctatgatggagtttcacata 1231760  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 362
Target Start/End: Complemental strand, 28197135 - 28197086
Alignment:
Q  313 tgtaatgcaaaaccacaattgaatcaaagaacaacaagataaaagagtag 362  Q
    ||||| ||||| | |||||||||||||||||||||| ||||| |||||||    
T  28197135 tgtaaagcaaaccaacaattgaatcaaagaacaacatgataagagagtag 28197086  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 321 - 369
Target Start/End: Complemental strand, 15639250 - 15639202
Alignment:
Q  321 aaaaccacaattgaatcaaagaacaacaagataaaagagtagtagagaa 369  Q
    ||||||||||||||| | ||||| |||||||| |||| |||||||||||    
T  15639250 aaaaccacaattgaaacgaagaaaaacaagatgaaagggtagtagagaa 15639202  T

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Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 439 - 506
Target Start/End: Complemental strand, 7313989 - 7313922
Alignment:
Q  439 taatcaagagagtaactttacgcagagattctaaaagaaattacaagaataaatcttcaaacctaatt 506  Q
    ||||||||||||||||||||   |||||||||||||||||||||||||||||||||||| ||||||||    
T  7313989 taatcaagagagtaactttatagagagattctaaaagaaattacaagaataaatcttcatacctaatt 7313922  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 433 - 506
Target Start/End: Complemental strand, 7308826 - 7308753
Alignment:
Q  433 ttccattaatcaagagagtaactttacgcagagattctaaaagaaattacaagaataaatcttcaaacctaatt 506  Q
    ||||| ||||||| |||||||||||||  |||||||||||||| |||||||||||  |||||||||||||||||    
T  7308826 ttccactaatcaaaagagtaactttacaaagagattctaaaaggaattacaagaaccaatcttcaaacctaatt 7308753  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 434 - 506
Target Start/End: Complemental strand, 7325060 - 7324988
Alignment:
Q  434 tccattaatcaagagagtaactttacgcagagattctaaaagaaattacaagaataaatcttcaaacctaatt 506  Q
    |||| ||||||| ||||||||||||| ||||||||| || ||||||||||||| |   |||||||||||||||    
T  7325060 tccactaatcaatagagtaactttacacagagattccaatagaaattacaagagtcggtcttcaaacctaatt 7324988  T

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Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 313 - 366
Target Start/End: Complemental strand, 22859629 - 22859576
Alignment:
Q  313 tgtaatgcaaaaccacaattgaatcaaagaacaacaagataaaagagtagtaga 366  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  22859629 tgtaatgcaaaaccacaattgaatcaaagaacaataagataaaagagtagtaga 22859576  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 321 - 369
Target Start/End: Original strand, 1714843 - 1714891
Alignment:
Q  321 aaaaccacaattgaatcaaagaacaacaagataaaagagtagtagagaa 369  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1714843 aaaaccacaattgaatcgaagaacaacaagataaaagagtagtagagaa 1714891  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 271 - 356
Target Start/End: Original strand, 54744181 - 54744263
Alignment:
Q  271 gcaaccaaaaaccaaaacaattgtaagcaataacaacaagattgtaatgcaaaaccacaattgaatcaaagaacaacaagataaaa 356  Q
    |||||||| |||||||||||||| ||||||||| |||||   || || ||||||||||| ||||| ||||||||||||||||||||    
T  54744181 gcaaccaataaccaaaacaattgcaagcaataataacaa---tgcaaggcaaaaccacatttgaaccaaagaacaacaagataaaa 54744263  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 439 - 506
Target Start/End: Original strand, 21334811 - 21334878
Alignment:
Q  439 taatcaagagagtaactttacgcagagattctaaaagaaattacaagaataaatcttcaaacctaatt 506  Q
    ||||||||||||||||||||| || |||||| ||||| |||||||||||  | |||||||||||||||    
T  21334811 taatcaagagagtaactttacacaaagattccaaaaggaattacaagaaccagtcttcaaacctaatt 21334878  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 295 - 369
Target Start/End: Complemental strand, 53666065 - 53665994
Alignment:
Q  295 aagcaataacaacaagattgtaatgcaaaaccacaattgaatcaaagaacaacaagataaaagagtagtagagaa 369  Q
    |||||||||||||||   ||||||| ||||| |||||||| |  ||||||||||||||||||||| |||| ||||    
T  53666065 aagcaataacaacaa---tgtaatgtaaaactacaattgattagaagaacaacaagataaaagaggagtatagaa 53665994  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 272 - 371
Target Start/End: Complemental strand, 28462101 - 28462002
Alignment:
Q  272 caaccaaaaaccaaaacaattgtaagcaataacaacaagattgtaatgcaaaaccacaattgaatcaaagaacaacaagataaaagagtagtagagaatc 371  Q
    ||||||| | |||||||||||| ||||||||||||| | | | ||| |||||| ||| ||  ||  |||||| ||||||||||||||||| |||||||||    
T  28462101 caaccaatacccaaaacaattgcaagcaataacaaccacaatttaaagcaaaaacactatcaaacaaaagaataacaagataaaagagtaatagagaatc 28462002  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 370
Target Start/End: Complemental strand, 40873905 - 40873843
Alignment:
Q  308 aagattgtaatgcaaaaccacaattgaatcaaagaacaacaagataaaagagtagtagagaat 370  Q
    |||| ||||||| || |||| ||||||||  ||||||| ||||||||||||||||||||||||    
T  40873905 aagagtgtaatgtaagaccataattgaatagaagaacaccaagataaaagagtagtagagaat 40873843  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 447 - 506
Target Start/End: Complemental strand, 24454053 - 24453994
Alignment:
Q  447 agagtaactttacgcagagattctaaaagaaattacaagaataaatcttcaaacctaatt 506  Q
    ||||||||||||| || |||||  ||||| ||||| ||||||||||||||||||||||||    
T  24454053 agagtaactttacacaaagattacaaaaggaattataagaataaatcttcaaacctaatt 24453994  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 313 - 362
Target Start/End: Complemental strand, 26383984 - 26383935
Alignment:
Q  313 tgtaatgcaaaaccacaattgaatcaaagaacaacaagataaaagagtag 362  Q
    |||||| ||||||||||||| |||| ||||| ||||||||||||||||||    
T  26383984 tgtaatacaaaaccacaattaaatcgaagaagaacaagataaaagagtag 26383935  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 451 - 506
Target Start/End: Complemental strand, 36681749 - 36681694
Alignment:
Q  451 taactttacgcagagattctaaaagaaattacaagaataaatcttcaaacctaatt 506  Q
    ||||||||| || |||||| |||||||||||||||||| ||||||||||| |||||    
T  36681749 taactttacacaaagattccaaaagaaattacaagaatcaatcttcaaacataatt 36681694  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 431 - 506
Target Start/End: Original strand, 7064726 - 7064800
Alignment:
Q  431 cattccattaatcaagagagtaactttacgcagagattctaaaagaaattacaagaataaatcttcaaacctaatt 506  Q
    |||||||||||||||||||||| |||||| || |||||| ||||| ||||| |||||| ||||| ||||| |||||    
T  7064726 cattccattaatcaagagagtatctttacacaaagattccaaaag-aattataagaattaatctccaaacataatt 7064800  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 313 - 355
Target Start/End: Original strand, 38746638 - 38746680
Alignment:
Q  313 tgtaatgcaaaaccacaattgaatcaaagaacaacaagataaa 355  Q
    ||||| || ||| ||||||||||||||||||||||||||||||    
T  38746638 tgtaaagccaaatcacaattgaatcaaagaacaacaagataaa 38746680  T

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Target: scaffold0263 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 313 - 349
Target Start/End: Original strand, 5032 - 5068
Alignment:
Q  313 tgtaatgcaaaaccacaattgaatcaaagaacaacaa 349  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  5032 tgtaaagcaaaaccacaattgaatcgaagaacaacaa 5068  T

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