View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0616_low_60 (Length: 203)
Name: NF0616_low_60
Description: NF0616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0616_low_60 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 80 - 203
Target Start/End: Original strand, 35423827 - 35423945
Alignment:
| Q |
80 |
acaaaattttaaataagtcgttagtgaaaattttcaatacttcatgatccacccacacttgtcttgtctagtctgaactcgcaattattataattatttt |
179 |
Q |
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||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
35423827 |
acaaaattttaaataagtcgttagtgaaatttttcaatacctcatgatccacccacacttg-----tctagtctgaactcgcaattattataattatttt |
35423921 |
T |
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| Q |
180 |
gacaaatatctgacaattattaaa |
203 |
Q |
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|||||||||||||||||||||||| |
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| T |
35423922 |
gacaaatatctgacaattattaaa |
35423945 |
T |
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